Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------ARR11(3)                                                                        --------->YAB1          >>>>>>>>>ARR2                                                 --------->AHL20(2)         --------->ATHB12                                         <---------ZAT18        <---------YAB1                        <---------YAB1   <---------ANAC46 ---->NtERF2             <-----------GT1   <---------YAB1    <---------ZAT14             --------->HSFB2a(2) ------>ANAC58      <-------TEIL    <-----------GT1          --------->ZAT14<---------YAB1       ---- ------>ANAC58  <---------YAB1  <----------DOF2           ------>ZmHOX2a(1)--------->ARR11(3)  <-----   acgccttggtttgattgtatgattcatttaccttcttttttcattactataagtgtaatcctgtttagtgcaaataatatcattgtttcttctagcatcg  1181100                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              -------                                                 <---------ANAC58                             <------                                           <<<<<<<<<<MYB80                     ----------->HVH21-----                                          <---------MYB46(3)                   --------->ALFIN1------                                       <---------ICU4               --------->ALFIN1         --------                                      <---------YAB1               --------->LBD16      ---------->ARF1                                      --------->ICU4              <---------ANAC58  <---------ANAC58                                    <---------ICU4                <---------ANAC58  <---------ANAC58                          <---------At4g35610    <---------ANAC58 <---------ANAC46<---------YAB1----- ------->GT1 <---------GLK1(1)      --------->YAB1        <---------TOE1(3) <---------DEAR3(1)<------ ----ANAC46  --------->GLK1(1)     <---------ATHB12       <---------TOE2(3)--------->At4g35610<------   tgttatttgtaatggagttccatagtttagatgctaaatcatgatggtttgtcttgtttttaggtttgccgtggaacagcggtgatgcttgtctcaccaa  1181200       --------->DEAR3(1)      <------NtERF2      --------->ANAC58     ------>NtERF2   <---------ABI4(2) ----->MYB46(3) ----->DEAR3(2) --->P--------->ANAC58 --->MYB52(1) -->MYB46(3) -->DEAR3(1)                       --------->ZAT14 -->AtMYB61                   <---------MYB52(1) ---MYB111(2)                <-------GAMYB ->MYB83                    --------->MYB52(2) --->MYB55(1)               <---------MYB46(3) ->MYB46(3)                --------->SPL7                           --------->GLK1(2) ->MYB46(1)               <---------MYB52(1)                   ---------->DOF2 ---MYB46(2)         -------->P    <---------ZAT14           --------->HSFB2a(2) ---MYB55(2)       ----------->HVH21  <---------At4g35610    <---------HSFB2a(2)        <-----------GT1   ccgatggcaccgaagaaatcgctaacccgttcgttactgcagaggctgtctaaagactttcttctcaaagaatatgtctctctattagtttaacttggcg  1181300                                                                                        ------>MYB46(1)                                                                                        ------>MYB83                                                                                      <---------MYB111(1)                                <---------REM1(1)                                     <---------MYB46(2)                           <---------ANAC46               <-----------GT1             <---------MYB59                   --------->ZAT6                       <---------AHL20(2)           --------->ANAC55(2)              <---------At4g35610                       --------->AHL20(2)           <---------ANAC55(2)              --------->At4g35610                      --------->AHL20(2)           -------->P   atttagagagtatttcatctaactctctggtgtgatgttggaaacatatatgttcaatttaaacaatttggaacatcatggacacttacctaacttcgtt  1181400                                       --------->ARR14(2)                                       <---------ARR14(2)                               ------>ZmHOX2a(1)                              --------->TOE1(3)                         --------->ARR11(3)                         <---------ARR11(3)          ----------->GT1                            <----                         <-----------ARR10           --------->LBD16                --------->ANAC55(2)               ---------->DOF2--------->TOE2(3)     ----------->GT1                 <---------ANAC55(2) <---------CCA1(2)      <---------GLK1(2)          <---------LBD16----------------------->TaNAC69(2)   ctcaaatctcgttgtgccaaagcacaaaatctccttaaccagaactgaagtaaaccggaaaaatcgaatgtctgagtcttctcgttactgaaccatggat  1181500                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                 ====================                                                                           <------ZmHOX2a(2)       --                                                                          --------->ARR11(3)       <-                                                                          <---------ARR11(3)   <-----                                                                      ---------->DOF2          <-----         --------->ATHB12                                             =============================== -------TBP                       *TSS                   <---------bZIP60(1)     <----------DOF2   --   ttataagcgagtgatttgaaatttttgaagttgtttccatagttttagtggagacgatgaagtcagtaatgtcaaagatcaaactttttagaccagtcgt  1181600    --------->ANAC55(2)    <---------ANAC58    <---------ANAC46    <---------ANAC58 <---------MYB52(1) ------->O2 --------TGA1a ------->bZIP60(1) --------bZIP60(1) ------->bZIP60(2) ------->ANAC58 ------->ANAC55(1) --------ANAC55(2) ------->ANAC46                                                                          <---------YAB1 ------->ANAC58                                                                     --------->AGP1 ========bZIP_DOF                                                                 --------->LBD16 ------->ANAC55(2)                                                               --------->HSFB2a(2) --------O2                <------ZmHOX2a(2)              --------->GLK1(2)   ------>MYB46(1) ------TGA1          <---------ALFIN1                    <---------GLK1(2)    ------>MYB83 ---------- ------HVH21 <-----------GT1                       <-----------GT1          --------->AtMYB61 ========bZIP_DOF--------->At4g35610            <---------ARR14(2)        --------->ARR11(3) -------- ------->TGA1a   <---------At4g35610            --------->ARR14(2)        <---------ARR11(3) --------   cacgttacgttgttcttacagctccacagatcaaactcttcttcttagcgaatttaccagactctgttaccagagagaccttcccagagctatgaaagca  1181700                                                                    --------->ARR11(3)                                                                    <---------ARR11(3)    --------->ATHB12                                               <---------CCA1(2)   <-------TEIL                                                <---------ANAC46               ------- >DOF2                <----------DOF2                          ----------->GT1               <------- ->ANAC58          <---------ARR11(3)                       --------->ALFIN1                 <------- ->ANAC58 ---------->DOF2                         <---------At4g35610         <---------At4g35610   atggattcattgcaaagtcatggtctttgggcagactctgcaacttattctgagcttatcaagtgttgtatatctaatagagctgttcatgaagggaatc  1181800      <-----------TGA1     <---------bZIP60(1)               <---------YAB1     --------->bZIP60(1)            <---------ATHB12     --------->ETT(2)               --------->ICU4    ---------->ID1        <---------WRKY12 -->GLK1(2)             <-----------HVH21                <---------YAB1                     --------- --GLK1(1)             --------->YAB1--------->YAB1<---------TOE1(3)  ----------->GT1     <---------WOX13(1) --GLK1(2)  --------->YAB1<---------WRKY38(1)      <---------TOE2(3) ------->TEIL      <---------YAB1   tcatttgtcgtcatttatacttcaatggtcatcgaccaatgatgtttctggttaatgttctgatcaatatgtatgtaaaattcaatcttttgaatgatgc  1181900                                                     <---------GLK1(1)                                                   --------->ATHB12   ------>MYB83                       <---------ANAC58                                            <--   ------>MYB46(1)                    <---------ANAC58                                --------->DAG2 --------->MYB46(3)    ---------->DOF2<---------ANAC46    <---------At4g35610       ---------->DOF2 >YAB1      <------ZmHOX2a(2) ----------->GT1     <---------YAB1              <-------TEIL<----------DOF2   tcaccaactgttcgatcaaatgcctcaaaggaatgttatttcttggactacgatgatttctgcttattctaagtgtaagattcatcaaaaggctttggag  1182000  Previous    Next  AGI:  At2g03870.1    Description:  small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative. similar to SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) [Arabidopsis thaliana] (TAIR:AT2G23930.1); similar to unknown [Populus trichocarpa] (GB:ABK93714.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain U6 snRNA-associated Sm-like protein LSm7 (InterPro:IPR017132); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 1180214    to: 1181434    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g03880.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G24000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47543.1); similar to hypothetical protein OsJ_020477 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36994.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1181534    to: 1183700    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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