Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ANAC58                                                            --------->ANAC58           <---------ANAC58                           <---------YAB1           <---------ANAC58                         --------->YAB1      <---------ICU4                                <---------ICU4                  --------->YAB1      --------->ATHB12                              -------->ATHB1      --------->ATHB12     <---------ATHB12   <-----------GT1            <---------ATHB12     <--------ATHB1 --------GT1         <---------ICU4              --------->WOX13(1)    <---------ATHB12             < --->AHL20(2)      --------->LBD16             <---------ATHB12        --------->ICU4               <   aacatcactcattgcttactccagaattactaaatcgaacaatttctaaatcaatcattcttaagcaaaatcaatgatttgatcaacaataagagagaaa  1122800                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                <---------HSFC1(2)                                                                               --------->MYB52(2)             --------------->AtSPL8                                            <---------MYB46(3)             --------------->AtSPL3                                           <--------P------>NtERF2   --------->ATHB12                                                       <---------LBD16   <-------- <---------WOX13(1)                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------ANAC58                                                      <----------DOF2  --------->DEAR3(1) ---------ANAC58                                              ---------->DOF2<---------MYB52(1)   ttgagtgatttgaaaaacgtactcttccttcttcgctcttcttcattctctcaagaaccatttcaaaagctggtttaccggtagtttcgccgagagcagc  1122900                            ------->GAMYB                            <---------ABI4(2)                           --------->ANAC58                           --------->ANAC58                           --------->ANAC46                          ------>MYB83                --------->DEAR3(1)                         --------->MYB52(1)          --------->ANAC58                        ------->GAMYB                --------->MYB46(3)                 <------ZmHOX2a(1)                   --------->ANAC58     ------>ZmHOX2a(2) --------->MYB46(3)           ------>NtERF2     ===================HOX2a_HOX2a                --------->DEAR3(1)    --------->CCA1(2)  <---------MYB55(2)          <---------ALFIN1    <------ZmHOX2a(2)  <---------MYB52(2)  ------>ZmHOX2a(2)                             <---------ARR11(3)    --------->ARR14(1)--------->ANAC58   <---------ARR14(2)                       --------->GLK1(1)    ====================HOX2a_HOX2a      <---------ARR11(3)                   --------->ANAC58   --------->ARR14(2) -------->P         --------->ARR11(3)                 --------->MYB52(1)   --------->ARR11(3) --------->ANAC58  <---------GLK1(1)                  <---------WRKY12   <---------ARR14(2)--------->WOX13(1) --------->At4g35610                ---------->CDC5   --------->AGP1================================HOX2a_HOX2a               <---------WRKY38(1) ----------->ARR10 <------ZmHOX2a(2) <---------At4g35610       ---------->ID1 --------->ANAC46 >At4g35610      =================================HOX2a_HOX2a--------->MYB52(2)  <---------ARR14(2)<- -ZAT2   <----------DOF2--------->AtMYB61<-----------ARR10<------NtERF2 --------->At4g35610        -- -ZAT14--------->At4g35610------>MYB46(1)--------->ARR14(2)  <---------MYB46(3)------->GAMYB<-------- -At4g35610  <---------TOE1(1)------->TEIL<------ZmHOX2a(2)<---------MYB52(1) --------->ANAC58    <--   gattagatccgctctacgaggatcaaccaacgcaccgagagcagatcccatcgccacggccgcttgttgccatcggctcaacggaactcgagctctttca  1123000          <---------ANAC46          <---------ANAC58                                               <---------ANAC46          <---------ANAC58                                             <------MYB46(1)  <---------ICU4                          --------->SPL7               <------MYB83   ------>NtERF2  --------->YAB1                         ------>MYB46(1)               <---------DEAR3(2) <---------YAB1                          ------>MYB83                 <---------DREB2C(2) --------ICU4                            --------->MYB52(1)      ---------->DOF2     --------->DEAR3(1) ------->YAB1        --------->GLK1(2)  --------->MYB55(1) --------->YAB1--------->ALFIN1------>NtERF2 --DOF2  --------->MYB52(2)            --------->AtMYB61 --------->GLK1(2) --------->ALFIN1      ---- -------ATHB12 <--------P    ----------->GT1     --------->GLK1(2)    <---------DEAR3(1)--------->DEAR3(1)   ataatcatcgttccttggtagataatctctctggttaaaaaccaaacggcgattctaagaatcagattaaagtcggtgtggaagacgacgacgacgattt  1123100                                 <----------DOF2                             <----------DOF2       ------->MYC2      --------->WRKY38(1)                                            <---------MYB52(1)       ------->MYC3      <---------ZAT18                                               <----------DOF2       <-------MYC3      --------->ZAT18                                              <----------DOF2       <-------MYC2   <---------O2                                                  ------>NtERF2      --------->ANAC46<---------ANAC58                  ---------->DOF2         --------->ALFIN1      --------->ANAC58<---------ANAC58          --------->CCA1(2)             <------------CBF      --------->ANAC58<---------ANAC46         <---------ARR11(3)          ------------>CBF ----->AHL20(2)    ------>ZmHOX2a(1)           --------->ARR14(2)   *TSS --------->GLK1(1)       <---   taaatcacacgcgcttatgtcctcgcgtggactttctttctgttctcaagatttgactgaaagtttttgagagagatttcaattggggcctttagtttat  1123200                     <---------TOE2(3)                  --------->AHL20(2)                                        <---------ANAC46               <--------HAHB4                                               ----------->GT1          --------->PCF5                    <---------AHL20(2)             <---------MYB46(3)     <-----------RAV1(1)                   --------->AHL20(2)            <---------MYB52(1)    ------   <------------CBF<---------AHL20(2)      <---------AHL20(2) --------->ARR11(3)               ------ --------GT1  <---------ATHB12       ----------->GT1          <---------ARR11(3)              <------   aactccattgtggcccatcatttaatgttcaaagaaaaaccgaaaataaatgactgaaatataagaacttgggccattgggtaaaaaaaactgagagatt  1123300                                                                                                   --                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                              <xxxxxx                                                                                        --------->SPL7                                                                                        --------->ATERF1(1)                                                                                        <---------LBD16                                                                                       <---------ATERF1(1)                                                                        <---------AHL20(2)    <xxxxxx                                                                       <---------AHL20(2) --------->LBD16                                                                       --------->AHL20(2) ------>NtERF2                       <----------DOF2                                 <---------AHL20(1)<---------DEAR3(1) --->GLK1(2)        <---------ARR11(3)                                <---------------AGL15 <xxxxxxxx --->GLK1(1)        --------->ARR11(3)                          ----------->GT1  ---------->DOF2<xxxx ---GLK1(2)   --------->YAB1---------->ID1            ----------->GT1<-----------------AGL1 <--------   ccctagtcaaatccaataagaagagcttttggcccataaatattgtaactgatatatagttatatgtagttaataaaattggcaaaagcctccggcgagg  1123400            <----------DOF2           <---------DAG2         <------NtERF2         <xxxxxxxxxxxxxxxxsmallRNA(s)         ------>NtERF2         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->DEAR3(1)       <xxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxsmallRNA(si3)      <---------LBD16      <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <-     <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                --     <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <--    <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <--    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                  ---    <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              --- <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         --------- ---->ZmHOX2a(2)              --------->ANAC58                                          <---------YAB1 ------ARR14(2)               --------->ANAC58                                         <-----------TBP ----->ARR14(2)               --------->ANAC46                                         <---------AHL20(2) --ZmHOX2a(1) <xxxxxxxxxxxxxxxxsmallRNA(s)                                             --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(se3)--------->SPL7                                         <---------AHL20(1) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxsmallRNA(i)              --------->AHL20(1) xxxxxxxxsmallRNA(s)      <---------MYB52(2)                                  ----------->GT1 ------- xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->ZAT6      *TSS      <---------ICU4 --------->ICU4---- -ANAC46<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)     <---------AHL20(2)<-------   atcgaactcgcggcctttcgcttacgaagcgaacgcaataccactatgctacagaggcattgatgcttaataagtatataatgtaatatttttataaaaa  1123500      <---------------AtSPL8   --------->AHL20(2)   <---------AHL20(2)                 --------->AHL20(1)  <---------AHL20(2)                 --------->ATHB51 --------AHL20(2)                    --------->AHL20(2) ------->AHL20(2)                    <---------ICU4 -------AHL20(2)                    <---------YAB1 -------AHL20(1)                    --------->ICU4    <---------HSFB2a(2)                        ---- ------>AHL20(2)        ------->GAMYB<---------AHL20(2)  <---------ZAT6                       <------ ------>AHL20(1)      --------->At4g35610<---------AHL20(2)                                   ------- >YAB1--------------->AtSPL8     <---------YAB1  <----------DOF2                              ------- -->ICU4  --------->ZAT18      ----------->GT1--------->ARR11(3)                     --------->GLK1(2) ----->AHL20(2)      --------->MYB52(1)<---------YAB1 --------->HSFB2a(2)    <----------ID1   <------ --AHL20(2)  --------->ANAC46<------------CBF <---------ARR11(3)         ---------->DOF2  <----------   ttaatttatatgtacacaaaaaacaactgaatattgtaattattttaaaatcttttctagagtaacccatagagagaaagaaacaaaattctagagtaca  1123600                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)           <---------AHL20(2)                                                       --------->YAB1 ----->ANAC46                                                           ----------->GT1 ---ZAT18 <---------AHL20(2)                                            <---------At4g35610 -->ZAT18 --------->AHL20(2)                                           --------->ANAC58         ----- -->ZAT14 --------->AHL20(1)            --------->ANAC58        --------->TOE2(2)--------->TOE2(3) ---ZAT14 <---------AHL20(1)            --------->ANAC58      -------->P--------->At4g35610     ----- -----AtSPL8                        --------->ANAC46  --------->ANAC46 --------->ANAC58      <-------   caaaaacaacaatttattctcaaatttcaattctatctacacaagaattcaattccacaagactaacctatgtaagctaaataccataaaaatggaaacc  1123700  Previous    Next  AGI:  At2g03690.1    Description:  coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein. Identical to Ubiquinone biosynthesis protein COQ4 homolog [Arabidopsis Thaliana] (GB:Q9ZPR0); similar to unnamed protein product [Vitis vinifera] (GB:CAO42506.1); contains InterPro domain Coenzyme Q biosynthesis Coq4 (InterPro:IPR007715) Range:  from: 1121897    to: 1123168    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g03700.1    Description:  pre-tRNA. tRNA-Thr (anticodon: CGT) Range:  from: 1123387    to: 1123458    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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