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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                   <---------At4g35610
                                                                                   <---------ZAT14
                                                                                   --------->At4g35610
     --------->ANAC58                                                              --------->ZAT18
     --------->ANAC58                                                            <---------ZAT18
------>NtERF2                                                              --------->ANAC58
------->ATERF1(1)                --------->YAB1                            --------->ANAC58
------>At4g35610            --------->AHL20(2)                             ------>MYB83        -----
-------At4g35610          --------->ANAC58                          --------->HSFB2a(2)        <----
------>ZAT2               --------->ANAC58         ------>ZmHOX2a(1)--------->HSFC1(1)   <---------MYB52(1)
-------ZAT2         --------->ZAT2        ================HOX2a_HOX2a      ------>MYB46(1)<---------AtMYB61
--->ZAT14           --------->At4g35610 <---------ARR11(3)          <---------HSFC1(1)<---------LBD16
----ZAT14           <---------At4g35610 --------->ARR11(3)<---------At4g35610    --------->ZAT14
--->ZAT18          ----------->RAV1(1) --------->YAB1     --------->At4g35610    <---------ZAT14
----ZAT18        --------->At4g35610  <---------ATHB12<----------DOF2      --------->ANAC46<--------
-->ALFIN1---------->DOF2  ----------->GT1 ------>ZmHOX2a(2)         <---------HSFB2a(2) --------->LBD16
 
agctgcccaagctaaagctaagcagcagcaagaaaataacaatgatcttgaatccttctttagctcagtttctagaccaagcagtgtgctccggtggtct  846200
                                                                      <---------ANAC58
                                                                   <---------WOX13(1)
                                                                 <--------ATHB1
                                                                 --------->ATHB12
                                                                 <---------ICU4
                                                   ----------->HVH21  <---------ANAC58    <---------
                                            <---------PCF2       -------->HAHB4        --------->ANAC55(2)
                                          <---------ZAT18       <---------YAB1         <---------ANAC55(2)
                                          --------->ZAT18       <---------ATHB12      <---------LBD16
   <------ZmHOX2a(1)---------->DOF2       <---------RAP2.3(3)   --------->ICU4      ----------->HVH21
---->HSFB2a(2)   ----------->RAV1(1)   <-----------RAV1(1)     <---------TOE2(3)   <-----------HVH21
-----HSFB2a(2)  <----------ID1       <---------ANAC58        <---------AHL20(2)   --------->WOX13(1)
-MYB46(3)  <---------REM1(1)         <---------ANAC58       --------->AHL20(2)<---------CCA1(2)
 
agatgaggaatatggtgaagcgacaaagttcagaagcattgtttgtgggctcgtgtgaccagatttaatgattgcatgctcttatctatcacgggtcatg  846300
                                                         --------->REM1(1)
                                                        <-------TEIL
                                                  ---------->DOF2
                                               <-----------HVH21
            --------->ANAC58                --------->CCA1(2)                                -------
            --------->ANAC58               --------->ARR11(1)                                <------
          ---------->DOF2                  --------->ARR11(3)                                -------
      <---------ATHB12   --------->ANAC58  <---------ARR14(2)                           ----------->GT1
     <---------ALFIN1    --------->ANAC58  --------->ARR14(2)                  <-----------GT1   ---
--HVH21--------->YAB1  ---------->DOF2     <---------ARR11(3)    <----------DOF2     --------->ALFIN1
 
tctgtgccactcatcaagcactaccaagaagccaagagagtttgaagatatgtcaaagctacatctaacttttgagttcaatttacaagtgtagaaaatc  846400
         --------->ARR14(2)
         <---------ARR14(2)
         <---------MYB52(1)
        <-------GAMYB          --------->ALFIN1
       ----------->GT1         <---------DEAR3(1)
       <------MYB46(1)       <---------ANAC58
       <------MYB83          <---------ANAC46
      --------->MYB59        <---------ANAC58  <-------TEIL
  <---------MYB46(3)     <---------WOX13(1)  --------->ARR14(2)
-->ARR14(2)            <---------MYB46(3)    <---------ARR14(2)                                   <-
---ARR14(2)            --------->ATHB12 <---------ATHB12 <---------ALFIN1                --------->At4g35610
-->GLK1(2)      --------->ANAC58 <------NtERF2--------->CCA1(2)          <----------DOF2 <---------At4g35610
------>LBD16    --------->ANAC58<---------MYB46(3) ---------->DOF2<---------ANAC46    <------ZmHOX2a(2)
 
cagagttgttcggttactcaagacagtgattggggtggctcaaatgaagatacaaaaagaacacctctggtgtatgctttcactcttggatcagcagtgt  846500
                     --------->MYB52(1)
                     <<<<<<<<<<<<<<<<<LFY
                    ------->GAMYB
                   --------->MYB46(3)         --------->At4g35610
                   <---------MYB52(2)         <---------At4g35610
              --------->ANAC46          <---------At4g35610                        <---------HSFB2a(2)
              --------->ANAC58          <---------LBD16                       <--------ATHB1
              --------->ANAC58     --------->YAB1          <------MYB46(1)    --------->ATHB51
           <---------STY1(2)      <---------ATHB12        <---------AtMYB61   <---------ICU4      <-
           --------->STY1(2)      --------->MYB46(3)     <--------P           --------->YAB1  <-----
     --------->WOX13(1)         --------->WOX13(1)     <-----------RAV1(1)   <---------AHL20(2)   --
----------RAV1(1)----------->RAV1(1)    --------->At4g35610<------MYB83      <---------ATHB51 <-----
 
tttgttggcaatctagcaagcaacaaacagtggctcaatcaccagcggaagcagagtcttgttggtgtttttgctcttgaataattgtagaagcattgct  846600
                                                               ------------>CBF
  --------->ZAT14                    ----------->GT1        <---------HSFB2a(2)                 ----
  <---------ZAT14                 --------->DAG2         <---------YAB1                      <------
--------HSFB2a(2)                ---------->DOF2   --------->AHL20(2)              <----------DOF2
----ANAC58                 <------ZmHOX2a(1)       <---------AHL20(2)              -----------------
------->HSFB2a(2)        <---------TOE2(3)       <----------DOF2          <-----------GT1 <---------YAB1
----ANAC58             ---------->DOF2----------->GT1 <---------YAB1  <---------YAB1   <---------YAB1
 
tccagtacagagcatggtagagaaaacaaaggatgaaaaagtggaaaaacttcttttattattctcgacaatttttatttccacttctttattattctcg  846700
                                                                    ---------->DOF2           <-----
                                                           <------------AtMYB77               ------
                                                         --------->ARR14(2)                   <-----
                                                         --------->MYB52(1)                   <-----
                                                         <---------ARR14(2)                   <-----
                                                        ----------->HVH21                     ------
                                                      --------->ANAC55(1)                     <-----
                                                      --------->ANAC58                   --------->ANAC58
                                                      --------->ANAC46               ------>NtERF2
                                                      --------->ANAC58              ----------->HVH21
    <-----------GT1                                   <---------ANAC55(2)----------->GT1 --------->ANAC58
 <---------ICU4                                       --------->ANAC55(2)<---------REM1(1)    <-----
-------->CBF                                     --------->ZAT6 <------MYB83<-----------GT1 <-------
---HSFB2a(2)       <-------TEIL              <---------ANAC58   <------MYB46(1)     --------->ANAC46
---->WRI1     ----------->RAV1(1)            <---------ANAC58 <---------MYB52(1)    <---------ETT(1)
 
acaatttttacttaagacaacatacacacttatctatatgtttacatagcttactctacgtaaccgttggtaaaagttgtaacttctccgacaagttacg  846800
                                                                           --------->SPL7
                                                                        --------->TOE1(1)
                                                                        <xxxxxxxxxxxxxxxxsmallRNA(si3)
                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)
                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                                        <xxxxxxxxxxxxxxxxsmallRNA(le3)
                                                                        <xxxxxxxxxxxxxxxxsmallRNA(se3)
                                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                                                   --------->ARR14(2)
                                                                   <---------ARR14(2)
                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)
                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                          <---------ANAC46 ------->TEIL
                                                          --------->LBD16 <---------CCA1(2)
                                                         <---------ANAC46 <---------ALFIN1         <
----O2   --------->ANAC58                                <---------ANAC58<xxxxxxxxxxxxxxxsmallRNA(le3)
--->O2   --------->ANAC58                               <xxxxxxxxxxxxxxxxsmallRNA(s)             ---
----ANAC58                                              <---------LBD16<xxxxxxxxxxxxxxxxsmallRNA(se3)
----ANAC55(1)            --------->TOE2(3)              <-------TEIL<------ZmHOX2a(2)--------->ANAC58
----ANAC55(2)    ----------->RAV1(1)                   --------->ALFIN1--------->LBD16           <--
--->ANAC55(2) --------->ANAC58                       <---------GLK1(1)<xxxxxxxxxxxxxxxxsmallRNA(se3)
----ANAC46    --------->ANAC46                       <---------At4g35610--------->ANAC46     <xxxxxx
----ANAC58    --------->ANAC58                       <xxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ANAC58
----GT1<---------ALFIN1 ----------->GT1   ---------->DOF2<---------ANAC58<xxxxxxxxxxxxxxxsmallRNA(se3)
 
tctcttactcacaccctaagccacataatgttaaaacaaatgcaaaaaagaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgag  846900
           <---------At4g35610
           --------->At4g35610
          <xxxxxxxxxxxxxxxsmallRNA(si3)
          <xxxxxxxxxxxxxxxsmallRNA(le3)
          <xxxxxxxxxxxxxxxsmallRNA(fl3)
          <xxxxxxxxxxxxxxxxsmallRNA(si3)
          <xxxxxxxxxxxxxxxsmallRNA(se3)
         <xxxxxxxxxxxxxxxxsmallRNA(s)
         <xxxxxxxxxxxxxxxxsmallRNA(i)
         <xxxxxxxxxxxxxxxxsmallRNA(se3)
         <xxxxxxxxxxxxxxxxsmallRNA(si3)
         <xxxxxxxxxxxxxxxxsmallRNA(fl3)
        <xxxxxxxxxxxxxxxxxsmallRNA(se3)
        <xxxxxxxxxxxxxxxxxsmallRNA(le3)
        <xxxxxxxxxxxxxxxxxsmallRNA(si3)
        <xxxxxxxxxxxxxxxxxsmallRNA(fl3)
        <xxxxxxxxxxxxxxxxsmallRNA(se3)
       <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)
       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)
       <xxxxxxxxxxxxxxxxxsmallRNA(se3)
       <xxxxxxxxxxxxxxxxxsmallRNA(fl3)
       <xxxxxxxxxxxxxxxxxxsmallRNA(si3)
      <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)
      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)
      <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)
      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)
      <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)
      <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)
      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)
      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)
      <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)
      ----------->RAV1(2)
      <xxxxxxxxxxxxxxxxxxsmallRNA(le3)
      --------->At4g35610
     <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)
     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)
     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)
     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
     <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)
     <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
     <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)
     <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
     <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
    xxxxxxxxxxxxxxxx>smallRNA(i)
   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)
   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <---------AHL20(2)
 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <-----------TBP
 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------YAB1
 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <---------AHL20(1)
 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)              <---------AHL20(2)
 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)              --------->AHL20(1)                            --
 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->AHL20(2)                             --
 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->YAB1                                 <-
 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------YAB1                                  --
----------DOF2           --------->YAB1         <---------AHL20(2)              --------->DAG2    <-
------>ZAT18   --------->REM1(1)               --------->ICU4             ----------->GT1    <------
-------ZAT18  <-------TEIL                     --------->AHL20(2)       <------------CBF    <-------
xxxxxxxxxxsmallRNA(se3)  *TSS           <---------ANAC46 --------->AHL20(2)    ---------->DOF2  <---
 
cgctctaccatctgagctacatccccattcatatcaacatgttttgtatatttattatatttatatgatcaacaaaattgaaaaaagtgtgtttttttcc  847000
   --------->GLK1(1)
------->At4g35610
--------->RAV1(2)                                                          <-----------GT1
--------At4g35610                     --------->TOE2(3)     <---------------AtSPL8
------->ZAT2                       --------->ARR14(2)       --------------->AtSPL8
--------ZAT2                       <---------ARR14(2)       <---------------AtSPL3
-----GT1               --------->AHL20(2)        --------->ARR11(3)       <-----------GT1
----GT1   <----------DOF2    <-----------GT1     <---------ARR11(3)  <----------DOF2<-----------GT1
--------RAV1(2)   ----------->GT1  <---------GLK1(2)----------------------->TaNAC69(2)     ---------
 
cagctgaaatctacttttatttagaaaaaaattcaccatattctcaattagaggtcttcagaattggtacttctttttttccagttttttccagtcaaaa  847100
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AGI:  At2g02890.1   
Description:  F-box family protein. Identical to Putative F-box protein At2g02890 [Arabidopsis Thaliana] (GB:O80608); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G02660.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABD33119.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527)
Range:  from: 843912    to: 846615    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g02900.1   
Description:  pre-tRNA. tRNA-Ala (anticodon: AGC)
Range:  from: 846854    to: 846926    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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