Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->REM1(1)                                         <---------ALFIN1                                       <----------DOF2                                  <---------ZAT2                             --------->REM1(2)                                  --------->At4g35610                        --------->ZAT14                                  <---------At4g35610                      --------->LBD16                              <-----------TGA1                            <---------ANAC58                             --------->ANAC46                             --------------------->WRI1                          --------->ARR14(2)                              <---------ANAC58                          --------->GLK1(2)                               <---------ANAC46                          <---------ARR14(2)                          --------->ATERF1(1)                 <---------DAG2<---------MYB52(1)              ---------->DOF2                 --------->TOE1(3)----------->RAV1(2)         --------->AtMYB61 -------HVH21 <---------ALFIN1<-----------HVH21     <-------TEIL      <---------MYB52(1) ------->GAMYB   tcaggcatttcatcgagcaccttaagagcatccgtcacctgcttcaccttcatatacatactcaccaaagccgttgccgtgaacacatcaacgaaaaacc  773300                                                <---------HSFC1(2)                               --------------->AtSPL8<---------LBD16                       --------->ARR14(2)       <---------ZAT2                       <---------ARR14(2)       --------->HSFC1(2)        --------->LBD16                       --------->GLK1(2)        --------->ZAT2           <---------ANAC46                 --------->AtLEC2       <---------ARR11(3)              <---------LBD16             <    <-----------GT1   <---------GLK1(2) --------->ARR11(3) --------->ATHB12<------NtERF2     <------ZmHOX2a(1)   cagttttgacgacttgggcatgcagaatccgaccttgtacaacatctccaagcttcgcgcatgatttaagaagaggcgggaatgtgaacttgttaggaga  773400                                        --------->CCA1(2)                                        --------->GLK1(2)                                       <---------ARR14(2)                                       --------->ARR14(2)                                       <---------GLK1(2)                                   --------->O2                                --------->HSFB2a(2)                                   <---------O2                                <---------HSFB2a(2)                                   <---------ANAC55(2)                         --------->HSFC1(1)                                   --------->ANAC55(2)              <------MYB46(1)                               <-----------HVH21                    <------MYB83                          <---------ALFIN1                         --------->MYB59---------->DOF2                       <---------ARR14(2)                         <---------MYB55(1)    <-------TEIL ----------ID1         --------->ARR14(2)<-------TEIL            <---------MYB52(1)    --------->CCA1(2)   gtgagacaaaatcacatccagcgaagttccaccggtcacgagattcgagactcggtatctctgtctcgttaggtttatcatctagaaagatacaaaatgt  773500                                              ------------>CBF                                            ------->GAMYB                                         ----------->RAV1(1)                                       *TSS<---------MYB52(2)                                 -------                                     <---------ETT(2)                                <------MYB83                                     --------->ETT(2)                          <---------AHL20(2) ---                          ------>ZmHOX2a(1)--------->MYB46(3)           <-----------GT1       <------                  ---------->DOF2   <------NtERF2                 --------->YAB1     <------MYB46(1)            <---------ALFIN1      <---------ANAC46          --------->YAB1   <----------DOF2  -------   aaacgagagaacgaacacatcaaagctcctccattgtcgtcgacaacaaacaatgaacaaaatcaaaatcaaaatcactcttttatttggtttacaaatc  773600                                                       <---------ARR11(3)                                   <---------AtLEC2    --------->ARR11(3)          *TSS        ----------->GT1      <---------ALFIN1         --------->RVE1(1)     --------->ZAT14    <-----------GT1     <---------ANAC58<---------ANAC58                    <---------ZAT14        -- -->GLK1(2)             <---------ANAC58<---------ANAC58                    <---------REM1(2)     <-- -------->GT1        <---------MYB52(1) <---------ANAC46                  --------->ZAT14         --- ---ARR14(2)        <-------GAMYB--------->ANAC58     --------->CCA1(1)   <---------ZAT14----------->GT1 -->ARR14(2)<---------AHL20(2)   --------->ANAC58 --------->AHL20(2) ----------->HVH21  ----------->GT1   tggttaaaaccggtttaatttcggttaagtgccactcgcatggcctgaacaaaaaaatatctgaagtctctctgactgtacacagagagagagataaata  773700                                  --------->ANAC58                                  --------->ANAC58                                  --------->ANAC46                               <------ZmHOX2a(2)                              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              --------->ARR11(3)                              <-----------ARR10<-------GAMYB                              <---------ARR11(3)                        --------->HSFB2a(2)   <---------ANAC58                   <---------HSFB2a(1)        <---------ANAC58       --------->ATHB12 --------->HSFC1(1)<---------ANAC58      <---------YAB1    <---------HSFB2a(2)  <-------TEIL         <---------ICU4      --------->ICU4    <---------HSFC1(1)<---------ANAC46     --------->REM1(1)               <----- ------->CCA1(2)   <---------HSFC1(2)--------->AtMYB61  ------->TEIL      <----------DOF2  --------->At5g28300 -------ARR11(3)   --------->HSFB2a(1)    <---------ANAC58     --------->ANAC46           ----------- ------>ARR11(3)   --------->HSFC1(2)<---------ALFIN1--------->ANAC46  <-----------GT1   <---------DEAR3(1)   gatatgtgttgattagatcgaagcttctagaagatcacaccactgcgtgcgttatacgaacttctacatcatttctcttttctctcatcgctcggtgaat  773800             <---------DAG2                                                                         <       ------>ZmHOX2a(1)                                                               ------->TEIL--       =====================HOX2a_HOX2a                                                <-----------ARR10    <------ZmHOX2a(2)                                                   <---------ANAC58          <--   <---------ARR14(2)                                                   <---------ANAC58--------->GLK1(1)   --------->ARR11(3)                                        <---------ZAT2   ----------->HVH21  ----   <---------ARR14(3)                                        <---------At4g35610       --------->GLK1(2)   --------->ARR14(2)                                        --------->ZAT2  <---------WOX13(1)  <---   --------->ARR14(3)                                        --------->At4g35610 <----------ID1  ----   <---------ARR11(3)                                       --------->LBD16 <---------AtLEC2     <---  <------ZmHOX2a(1)  ------>ZmHOX2a(2)                      ------>NtERF2   <---------ANAC58   ------  ==========================HOX2a_HOX2a         <---------ANAC46    --------->CCA1(2)  --------->ARR14(2) ----ARR14(2)<----------DOF2<---------DAG2   <---------MYB52(1)  ----------->ARR10     <---------ARR14(2) >GT1------>ZmHOX2a(2)      <----------DOF2 <-------GAMYB <---------LBD16   <---------ANAC58<--------   tcgaggatcctcgagctttttgatcggagactttttctctcatcgtcgttgtttgaattctccggctgagagatgcttgcttgacgacgaatctccaccg  773900       <---------DAG2       <----------DOF2      <---------DAG2   <-----------GT1         ------>ZmHOX2a(2) ----------DOF2           <---------GLK1(1)                                <-------TEIL ---->ZmHOX2a(2)          --------->GLK1(1)                               <------ZmHOX2a(2) ----ZmHOX2a(2)           <------ZmHOX2a(2)                              <---------ARR11(3) ----->ARR14(2)          <---------ARR11(3)                              --------->ARR14(2) ------ARR14(2)          --------->ARR11(3)                              <---------ARR14(2) ----->ARR11(3)  --------->ZAT14                                <---------MYB46(3) ------ARR11(3)  <---------ZAT14                            --------->ATHB12 --->DEAR3(1)   ----------->RAV1(1)                        <---------YAB1--------->AGP1           <-- -ALFIN1     --------->ANAC46                 <-----------GT1   --------->MYB52(2)          <--------   atcttttaccttttcgcacaacagtgagatctctctcttgttctctaatttctgttctacgatgattcgttgctagatccattgattttagtttcttttc  774000                                                    <---------TOE1(2)                                                    <---------TOE2(2)                                                   ------>ZmHOX2a(1)                                             --------->HSFC1(2)                                       ------>ZmHOX2a(2)                                        -----              ------>ZmHOX2a(1)        ===================HOX2a_HOX2a                           -----              ================================HOX2a_HOX2a                                       <----      --------->YAB1                 <---------ARR11(3)                                   ------>ZmHOX2a(2)     <---------YAB1       <---------ANAC58   --------->HSFB2a(1)                          =========== -------At4g35610         <---------ANAC58   <---------HSFC1(2)     <---------ANAC46    <---------ARR11(3) --DOF2 <---------YAB1    <---------ANAC46---------->DOF2---------->DOF2    <---------ANAC46 --------   agatgttatcatcatcctttggacattttcgtgtgaattgatctcaaagcttcctaggttaaagagaattgtgtagttttgtatagaattgatctcaaag  774100                                           --------->MYB59                                           --------->MYB46(2)                                       <------MYB83                                       <------MYB46(1)                                      --------->MYB59                                  <---------ICU4                                           <---------ARR14(2)                                  <--------HAHB4                                           --------->ARR14(2)                                  --------->ATHB12                                         <---------                                 <---------YAB1                                           <---------GLK1(1)                               --------->YAB1                      <-------TEIL           --------->GLK1(1)                              <---------YAB1----------->GT1      <---------ARR14(2)       <---------CCA1(2)  ------>ZmHOX2a(1)           --------->ICU4<------MYB83 <---------ANAC58               <---------ANAC58 ---->HSFC1(2)           --------->ANAC55(2)<------MYB46(1)      --------->ARR14(2)     <---------ANAC58 ---->HSFB2a(1) --------->ANAC58 --------->ICU4          <---------AtLEC2         --------->ICU4 -----HSFC1(2)  --------->ANAC58<---------ARR11(3)       <---------ANAC58         <---------YAB1 ========HOX2a_HOX2a    <---------TOE2(3)<---------MYB52(1)     --------->At4g35610<---------ICU4<--- -->DOF2        --------->ANAC46--------->ARR11(3)       <---------ANAC46      <---------TOE2(3) ----   cttcctagttgtgcttataagctatttaggtgatgatcattaggttaggttataaacttgcttggcagattcaaatggtttgagataattgcatatccaa  774200  Previous    Next  AGI:  At2g02750.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41049.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74703.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 771150    to: 773539    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g02760.1    Description:  ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2-17 kDa 2 (UBC2) [Arabidopsis Thaliana] (GB:P42745); similar to UBC1 (UBIQUITIN CARRIER PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G14400.1); similar to UBC1 (UBIQUITIN CARRIER PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G14400.2); similar to ubiquitin carrier-like protein [Solanum tuberosum] (GB:ABC01903.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 773683    to: 775370    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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