Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------ARR14(2)                     ------->TEIL             --------->LBD16            --------->ANAC58            --------->ANAC58         --------->MYB52(1)--------->ARR14(2)     --------->WOX13(1)XXXXXXXXXXXXXXXXXXXX>MIR2111A/B                    --------->ARR14(2) --------->ARR14(2)  --------->GLK1(2)<---------AHL20(2)                  <---------ARR14(2) <---------ARR14(2)  --------->ARR14(2) <---------ANAC58                  --------->GLK1(2) ------->LBD16       <---------ARR14(2) <---------ANAC58                 ------>MYB83  --------->ANAC58 ------LBD16--------->ANAC46   --------->LBD16   ------>ZmHOX2a(1)       ------>MYB46(1)        <---- ---->MYB52(1)      <---------GLK1(2) <-----------GT1         --------->TOE2(3)        --------->ANAC58   ccggaaccaattacccgaaactgaatctgaatccgaaaatttacttgtgtcctaaattcttctaccctaaaaaccaaatctgaagtcgaacccaaaaata  324100                    <---------AHL20(2)                      --------->LBD16       --------->AHL20(2)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------AHL20(2)          <---------ARR14(2)      --------->ANAC46    --------->ARR11(3)             --------->ARR14(2)      --------->ANAC58    <---------ARR11(3)            <---------GLK1(1)        --------->ANAC58                   -------    <---------AHL20(1)    --------->AHL20(2)              <---------LBD16          ---------->DOF2    --------->AHL20(1)   --------->AHL20(2)             -------->P             --------->HSFB2a(2)  ------->TEIL      --------->AHL20(2) --------->LBD16 <-----------GT1         <---------HSFB2a(2) ---TEIL    --------->YAB1<---------AHL20(2)        <-----------ARR10     ----------->GT1     <------   catgaatattttaatcaaaaatttaaattttattcgaaatccgaaaaatttgcatatttacccgcaaaatcaagtatggttctaaaaaaggcctaaaatc  324200           <---------RVE1(1)          <---------MYB52(1)       <xxxxxxxxxxxxxxxxsmallRNA(s)                 --------->LBD16                   <---------ETT(1)       --------->MYB46(3)                          --------->ANAC46                   ----------->HVH21      ------->TEIL                                 --------->LBD16                  xxxxxxxxxxxxxxxxx   --------->ANAC46                               --------->HSFB2a(2)              --------->GLK1(2)   --------->ANAC58                 --------->TOE2(3)         <---------ARR14(2)   --------->ARR14(2)   --------->ANAC58              --------->GLK1(2)<---------HSFB2a(2)              <---------ARR14(2) -->ARR11(3)           <---------At5g28300      -------->P    --------->ARR14(2)--------->ANAC46 ---ARR11(3)          <-----------GT1------>ZmHOX2a(1)---------->DOF2       <-----------GT1  <-------   tatacacgaaccgatattttagatttaccctatagaatcctaaacttctctacccgaaaaaccgtattcgatcgaattttacccgaatccgacccgttta  324300                            <---------TOE2(3)                        <----------DOF2                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    <---------ARR11(3)                           --------->AHL20(2)                    --------->ARR14(2)                        <---------ICU4                    <---------GLK1(2)                     --------->ICU4                   <---------ARR14(1)--------------->AtSPL8  <---------YAB1                  --------->LBD16    <---------------AtSPL8  --------->ICU4                        --                <---------LBD16      <---------------AtSPL3-------->HAHB4                          --               -------->P   <---------TOE1(3)             <---------YAB1                          ---              --------->MYB52(1)     --------------->AtSPL3--------->YAB1                        <---             ================HOX2a_HOX2a                <---------ICU4                         <-----             ===============HOX2a_HOX2a<---------SPL7--------->YAB1                            ------       <---------ALFIN1 ------>ZmHOX2a(1)--------->SPL7--------->ICU4                         <------ xxxxx>smallRNA(si3)<---------ARR14(2) --------->TOE1(2)--------->YAB1                      --------- --MYB52(1)  ------>ZmHOX2a(1)   ---------->DOF2    <---------YAB1                        -----------   tccgaatggccactcctaaccggatcctttaaggttaaagacgtacgacttattgtgataatgataattaacttataagactgtgtctaatcttcaatta  324400     <---------AHL20(2)                      <---------ANAC58     --------->AHL20(2)                   ---------->CDC5 ------->YAB1                           <---------ANAC58 ------->TOE2(3)                 ------>NtERF2          <---------At4g35610 -------->GT1                    <------NtERF2          --------->ZAT14 ------TOE2(3)                  --------->ANAC58    <---------HSFB2a(2) ----AHL20(2)                   --------->ANAC58    --------->HSFB2a(2)   --------->TOE2(3) --->AHL20(2)                   --------->ANAC46    <---------HSFC1(1)  --------->GLK1(2) ---ATHB12                     --------->SPL7<---------ANAC58   ---------->DOF2              <------- >WOX13(1)                   <-----------HVH21      --------->HSFC1(1) *TSS                <---------YAB1 ->CBF                   <-----------GT1<---------ANAC58<---------ZAT14<---------GLK1(2)<---------MYB52(1)   atgttaattaactaaaaccattttttaaaactgtccgccatggcttagcgttttctagagcagagagaaagaagaatctcaattctcttcgttactaatg  324500                           <---------ANAC58                           <---------ANAC55(2)                           <------NtERF2                           <---------ANAC58                           <---------ANAC46                           --------->ANAC55(2)                          ------>NtERF2                         <---------ANAC46                        --------->ATERF1(1)                        <------NtERF2                       <---------RAP2.6(1)                       <---------DEAR3(2)                         ------>NtERF2                       <---------RRTF1(1)                        <---------RAP2.3(2)                       <---------DEAR4(2)                        <---------DEAR3(1)                       <---------RAP2.3(1)                      --------->RAP2.6(3)                       <---------ERF1                          --------->MYB52(1)                       <---------ATERF1(1)                    ====================bZIP_DOF                       <---------ORA47(2)                     --------->O2                       ------>NtERF2                          --------->TGA1a                      <---------RAP2.3(3)                     <---------TGA1a                      <---------RRTF1(2)                      <---------O2                      --------->DEAR3(1)                      ----------->HVH21                      <---------RAP2.3(2)                     --------->ANAC58                      <---------DEAR3(1)                      --------->ANAC46                      <---------RRTF1(3)                      --------->ANAC58                     <---------ABI4(1)                   --------->O2                    <---------ATERF1(1)                  ----------->HVH21                   <---------DEAR3(1)                    --------->ANAC58                 --------->At4g35610                   --------->ANAC46                      --------->ANAC58           <<<<<<<<<TBF1                  <---------LBD16                        --------->ANAC46        <<<<<<<<<TBF1             <---------GLK1(2)           ------->TEIL <---------WRKY12 <----------DOF2    <---------At4g35610 --ICU4     <---------At4g35610         --------->ANAC46 --------->bZIP60(2)  <<<<<<<<<TBF1       ---   tcatcgtattcttcagattccacggcggcgcgtgatcaacatgcgcctctactccgtccacgacacgacggctctttttcttcttcttcttcatcagcca  324600                                                                                <---------ZAT18                                                                                --------->ZAT18                                                                              ------->PIF4                                                                              ------->PIF5                                                                              <-------PIF4                                                                              <-------PIF5                                                                              ------->MYC2                                                                              <-------MYC3                                                                              <-------MYC2                                                                              ------->MYC3                                            --------->ZAT2                   <------NtERF2                                            <---------ABI4(2)                <---------ANAC58                                            <---------ZAT2                   --------->ATERF1(1)                                        <------NtERF2                        <---------ANAC46                                       ------>NtERF2                         <---------ANAC58                                      <---------ALFIN1                      --------->ABI4(2)                                     --------->MYB46(3)                    <---------ANAC46                                    <-----------HVH21                     <------NtERF2                                   --------->ANAC46                       --------->ATERF1(1)                                   --------->ORA47(1)                    <---------ATERF1(1)                                  --------->DEAR3(1)                     <---------DEAR4(2)                                  --------->MYB46(3)                     <---------RAP2.3(1)                                --------->MYB52(1)                      <---------DEAR3(1)                              <------ZmHOX2a(2)                         <---------RRTF1(3)     --------->At4g35610     <-----------HVH21                          <---------RAP2.3(2)     <---------At4g35610=============HOX2a_HOX2a <-----------HVH21     <---------At4g35610  ------>MYB83          <------ZmHOX2a(1)--------->DEAR3(1) <--------P --------->At4g35610        ---  ------>MYB46(1)   --------------------->WRI1  --------->DEAR3(1)  ---------->DOF2          -------- ------>AGP1   <---------MYB52(1)--------->At4g35610      <---------MYB46(3)------>NtERF2<------ZmHOX2a(1)   gacctacagctctcgccgttctattaggacggatcaccggccaccgagcaccgtcgatgctggttagagaaacagcggcgcgtgctctcgaggagagacg  324700                                                                          <---------ARR14(2)                                                                          --------->ARR14(2)                                                                          <---------MYB52(1)                                                                        <---------MYB46(3)                                                                      --------->At4g35610                                                                      <------NtERF2                                                                    <-----------RAV1(2)                                                                    ---------->CDC5                                                                    <---------WRKY12                                                                   --------->TGA2(2)  <---------SPL7                                                                  <-----------TGA1   <---------DEAR3(2)         <--------P                                               <-----------HVH21 --------->ETT(1)         <---------ARR14(2)                                      <---------ANAC46   <---------At1g77200         --------->ARR14(2)    <---------At4g35610               <---------ANAC58  <<<<<<<<<<DREB2A        <-------GAMYB          --------->At4g35610               <---------ANAC58  <<<<<<<<<<DREB1A      <---------TOE2(3)      <---------RAP2.6(2)             <---------ANAC58  <---------ANAC58 --------->ATHB12       <---------MYB46(3)                   <---------ANAC58  <---------ANAC58   --- ---->TEIL   <---------HSFB2a(2)                           --------->ARR11(3)<---------YAB1<-------GAMYB ->CCA1(2)   --------->HSFB2a(2)                      <----------DOF2 <---------At4g35610 <---------ANAC46   aatcgattggggttactcgaagcctgtagttgctgctgatatactatggaacgctgctttagttcttgcgtcagcggttatgcttgtcggtaccgttgaa  324800           ------->TEIL        <---------ATHB12        <---------ANAC46      ------>MYB83           ------>ZmHOX2a(2)      ------>MYB46(1)      <---------AGP1                          <---------AtMYB61    <---------MYB59<---------TOE1(3)                        ------->MYC3 <------MYB83  <---------ARR11(3)       --------->ARR14(2)               <-------MYC3 <------MYB46(1)  --------->ARR11(3)       <---------ARR14(2)       --------->MYB52(2)  --------->MYB59 ------->DOF2      <---------TOE2(3)                <---------MYB46(3)  <---------AtMYB61 -----------   gaaagacctaatgaaccgattagggtttggatctgtgtgtatgggttacagtgtttgttccatgtggttttggtttggtctgagtattggagaagaaact  324900                                                                   --------->ANAC58                                --------->YAB1               <---------YAB1                                <---------ICU4            --------->ICU4                               <---------YAB1             <---------YAB1                              --------->ARR11(3)        --------->YAB1                             --------->YAB1            <---------YAB1     --------->YAB1               --------->ARR14(2)           =========================================================               <---------ARR14(2)    <---------YAB1<---------ANAC46--------->ANAC46           <------ >ARR10<---------ZAT6       <---------YAB1  --------------->AGL15  --------->ANAC58    --------->MYB46(3)   caactcgtagagctagggatttggagtcttatgatcatgaagattacaacattgagtatgattatgaacaagacagtgatgacaattcaacaacttacag  325000  Previous    Next  AGI:  At2g01735.1    Description:  RIE1 (RING-FINGER PROTEIN FOR EMBRYOGENESIS); zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G68070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42361.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 324471    to: 326093    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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