Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->RAP2.3(3)    --------->At4g35610    --------->ZAT2   --------->ANAC46 ------->CCA1(2) -------ARR14(2) ------>ARR14(2)                                                                                    < ---->LBD16                                                                               ----------- >ARR11(3)                                                                             <---------ARR11(3) >ARR14(2)                                            --------->At4g35610     <---------ARR14(2) <--- >ARR14(3)            <---------ZAT18            ---------->DOF2              --------->ARR14(2)<---- -ARR14(3)            <---------ZAT14           ------->GAMYB                ==================HOX2a_HOX2a -ARR14(2)            --------->ZAT14          --------->ANAC46              <------ZmHOX2a(1)  ----- -ARR11(3)      <-----------TGA1             --------->MYB52(1)         --------->ATHB12<------ZmHOX2a(2) >ARR10         <-----------HVH21          <---------ATHB12     ----------->GT1        --------->ARR11(3)   gatacgagcagccattttcgtcactgcagtaagaacaaaactcaaatcaacgaaagagctcagagatggtgaattgataggatttggaagatcagtaaaa  320100                                                                                        --------->O2                                                                                    <------NtERF2                                                                                   --------->LBD16                                                                                   <---------ATERF1(1)                                                                                   ------>NtERF2                                                                                  <---------DEAR3(1)                                                                                  --------->ATERF1(2)                                                                 <------NtERF2    <---------ATERF1(2)                                                              <------NtERF2       --------->DEAR3(1)                                                              <---------------------WRI1<---------O2                                                              <---------LBD16    <---------ORA47(1)                                                             <---------RAP2.3(1) --------->ATERF1(1)                                                             <---------ATERF1(1) --------->SPL7                                          ------>ZmHOX2a(2)  ------>NtERF2      <------NtERF2                                          ----------->GT1   --------->ATERF1(2) --------->ATERF1(1)                                        <---------ARR14(2)  <---------RAP2.3(3) <---------ATERF1(1) -----------GT1                         --------->ARR14(2)  <---------DEAR3(1) <---------DEAR3(2)   - >GT1                              ------>ZmHOX2a(2)        <---------ATERF1(2)------>NtERF2       -- ------ICU4                       <------ZmHOX2a(2)       --------->MYB52(1)   <---------SPL7   <---- -----AHL20(2)                   --------->ARR11(3)     --------->DEAR3(2)    <---------DEAR3(1)----- ---->AHL20(2)                   <---------ARR11(3)    --------->MYB52(1)   <-----------HVH21  <-----   aattactcaccgatgaagacagaaacagcaagagagatcgtggatcgtaaatatagataccgacggcggaaggaagaacgtcggccggcgaagtgagaat  320200     <---------WRKY38(1)     <---------WRKY12    --------->WRKY18(1)   <-----------HVH21                                           *TSS<-----------GT1    --------->ANAC58  --------->LBD16                                              <----------DOF2        <----------ID1 ----->ZmHOX2a(2)                                              <---------DAG2         --------->ANAC58 ------->ARR14(1)                                         <---------ANAC58            --------->ANAC46 -----KAN4(1)                            --------->ATHB12 <---------ANAC58      --------->AHL20(2) ---->KAN4(1)     ----------------------->TaNAC69(2)    <-----------GT1   ------>ZmHOX2a(1) ----KAN4(2)---------->DOF2      --------->ZAT14     --------->MYB52(2)  --------->TOE2(3)   gatccggtcaactacaaagtctcagtgtctctcacttctctcttgatttagggattagttacgagcttttttcttcctcagattaaaaacgacatgagac  320300                                                                                         <-------MYC4                                                                                         ------->MYC4                                                                                         ------->MYC2                                                                                         <-------MYC2                                                                                         <-------MYC3                                                                                         ------->MYC3                                                                                        <--------ABF1                                                                                        <---------TGA1a                                                                                        <---------O2                                                                                        --------->TGA1a                                                                                        --------->O2                                                                                 <------ZmHOX2a(2)                                                                              <------MYB46(1)                                                                            ======================MYC_MYB                                                                            <--------P  <---------ANAC55(2)                             <---------ANAC58                              <-------GAMYB=============                             <---------ANAC46           --------->ANAC46   =======================MYC_MYB                             <---------ANAC58<------------CBF             <---------MYB46(3)                            <---------DEAR3(1)          --------->ANAC58  <---------DEAR3(2)                     <---------AHL20(2)     --------->ATHB51           ===========================MYC_MYB                    --------->AHL20(1)      -------->ATHB1             ------------>AtMYB77                <---------AHL20(2)          --------->ATHB12          --------->ETT(2)  <---------ANAC46               --------->AHL20(2)          <---------YAB1  ----------->RAV1(1)<------MYB83-----------  <---------ANAC58  --------->AHL20(2)  <-----------------AGL3     --------->RVE1(1)    --------->ANAC55(2)  <---------ANAC58  <---------AHL20(2)<---------ARR11(3)--------->ANAC58 <---------DEAR3(1)     <----   gttgtcgtttcaaacttttaaatttaatgggccgtgagaagaactattattgggcttcacaccacaaaaatatcgacggttggatcagacacgtgtaata  320400                                  <------NtERF2                                <---------ATERF1(2)                                --------->ANAC46                                --------->RAP2.6(2)                                --------->DEAR3(1)               <-----------HVH21--------->ATERF1(2)       ------>MYB46(1)              --------->bZIP60(1)------>NtERF2            ------>MYB83        <---------ARR14(2)     ---------->ID1           <---------MYB59    --------->SPL7             <---------RAP2.6(2)  <---------ETT(2)   --------->MYB52(1)<---------ZAT14             <---------MYB46(3)  <---------SPL7     --------->ZAT14 --------->AtLEC2   <---------MYB111(1)    ------>NtERF2   <----- =====================================bZIP_DOF <---------MYB52(1)             --------->RAP2.3(3) <-- >GT1   --------->ARR14(2) <----------DOF2  <-------TEIL<---------MYB46(2)    --------->DEAR3(1) ---- -----ICU4    <---------bZIP60(1)<---------RAP2.6(3)--------->ETT(2)         *TSS            <-------   actccgaacggttccgatgtcactgaacactttgccgccattcaaattcgtttgtcgacctaactctgtttcttctctcgcccccttcaaaattttctcc  320500                                         <-----------GT1                                  <---------CCA1(1)  <---------ANAC55(2)             <---------RVE1(1) ----LBD16                       <---------AHL20(1) ---------HVH21                  <---------ARR11(3) ----->LBD16                     --------->ARR11(3) ----GT1         <---------YAB1----------->ARR10   ggtcacttgaatttgtgttctgattcaacgagtaagatatttttgaccatcgacgagttttgaaactcaaattgttgtttatttcttcagtaactatggc  320600                                        <<<<<<<<<TBF1                                     <<<<<<<<<TBF1                                  <<<<<<<<<TBF1      <---------ANAC58                              ---------->ID1         <---------ANAC58                             <------------------------ANAC81---------->DOF2                     <------------MYB.PH3(1)     <----------DOF2   <-----------GT1              <----   tatcgattgtctcgtacttggtaacagtttttgttcttcttcttcttctctctttgcttcttcaaagtttcacaatttcaatttctgtataattctatct  320700                 --------->At4g35610                --------->ALFIN1               <-------PIF5                            --------------->AGL15               ------->PIF5                            <---------------AGL15              <---------ZAT2                          <---------YAB1              <---------At4g35610                  ----------->HVH21         <---------ARR14(2)                  <---------AtMYB61         <---------ARR11(3)        <---------CCA1(2)                  <---------ANAC46            --------->ARR11(3)           <   =====================RAV                --------->ALFIN1   ----------->GT1                  <-----   <-----------RAV1(1)                 --------->At4g35610    --------->YAB1                   ------ ------DOF2 <-----------RAV1(2)   ---------->DOF2  ----------->TGA1---------->DOF2         <-------TEIL   tttttgtgttgtatccaggtgctggacaagagattggaaagagctgtgtggtagtgacgattaatggtaaaaagataatgttcgattgtgggatgcatat  320800                <---------ICU4                --------->YAB1                                                   --------->YAB1               <---------ATHB12                  --------->LBD16                 <---------ICU4          --------->YAB1                         ----------->GT1                <---------YAB1      --------->ICU4                           <---------LBD16                --------->YAB1      <---------YAB1                         --------->ARR14(2)            <---------CCA1(2)    --------->YAB1<---------MYB52(1)         <---------ARR14(2)           <XXXXXXXXXXXXXXXXXXXXMIR823 ---------DEAR3(1)--------->DOF5.7(2)    >>>>>>>>>RAP2.2             ------>ZmHOX2a(2)             <- --MYC3<---------ICU4                 <---------CCA1(2)            <---------ARR11(3)            ---- ->MYC3--------->YAB1               --------->YAB1<---------MYB52(1)<------ZmHOX2a(2)   <---------ALFIN1   gggctgtgatgatcacaatcgttacccaaatttttctctcatatctaaatccggtgattttgacaacgcgatctcttgtatcatcatcacacacttgtat  320900                        <---------DAG2                        <----------DOF2                               ----------->GT1             <--               --------->GLK1(2)                                  <---------YAB1           <---------              <---------GLK1(2)        <---------DAG2       <---------AHL20(2)          <------ZmHOX2a(2) --------GLK1(2)    ---------->ID1     <----------DOF2      <---------YAB1              ============= ----->ICU4 --------->LBD16         <-----------GT1<-----------RAV1(1)<---------ZAT6   --------->ARR11(3)   tgattcttcaaacccagaatttgtcccttttttaaaattcacttttttagtttttgtgggttttaattgtgagtgttaatagccatatggatcatgttgg  321000  Previous    Next  AGI:  At2g01720.1    Description:  ribophorin I family protein. similar to ribophorin I family protein [Arabidopsis thaliana] (TAIR:AT1G76400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68938.1); similar to unknown [Populus trichocarpa] (GB:ABK95979.1); similar to unknown [Populus trichocarpa] (GB:ABK96072.1); contains InterPro domain Ribophorin I; (InterPro:IPR007676) Range:  from: 317029    to: 320263    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g01730.1    Description:  ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II); catalytic/ protein binding. similar to CPSF73-I [Arabidopsis thaliana] (TAIR:AT1G61010.2); similar to CPSF73-I, protein binding [Arabidopsis thaliana] (TAIR:AT1G61010.1); similar to CPSF73-I [Arabidopsis thaliana] (TAIR:AT1G61010.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO42362.1); similar to ACT11D09.9 [Cucumis melo] (GB:AAS80153.1); similar to hypothetical protein OsI_030252 [Oryza sativa (indica cultivar-group)] (GB:EAZ09020.1); contains InterPro domain RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108); contains InterPro domain B Range:  from: 320477    to: 323946    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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