Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->GLK1(2)                                                                     --------->YAB1            <------ZmHOX2a(1)                      ---------->DOF2  <---------YAB1 <-----------HVH21          --------->ALFIN1                      --------->YAB1     <---------AHL20(2)         <------ZmHOX2a(1)               --------->ANAC58         --------->YAB1  --------->ANAC46   <------NtERF2     --------->At4g35610 --------->ANAC46  ------>NtERF2       --------->ARR14(2)  --------->LBD16    <---------At4g35610 --------->ANAC58 --------->DEAR3(1)   <---------ARR14(2) ---------LBD16<------ZmHOX2a(1)     <-----------GT1      ----------->HVH21--------->ZAT6          <-   tcgccggaagaggaggaggattaagctcagagagcatattatcaagccaagaataaagctccgacggattataatgaacagtatccgtcgcgagatgaga  257100                                                               <---------ALFIN1                                                             ------>NtERF2                                                             --------->LBD16                                                            --------->DEAR3(1)                                                            --------->ANAC58                                                            --------->ANAC46     <----------DOF2                                                            --------->ANAC58  ------>MYB46(1)                                                         --------->AtMYB61    ------>MYB83                                                         ------->GAMYB      <---------MYB59                                                        --------->MYB46(3)  <---------MYB46(2)                        <---------ICU4                 -------->P       ----------->HVH21                       <---------YAB1              --------->ANAC58     --------->WRKY38(1)                     --------->YAB1                --------->ANAC58     --------->WRKY12 --------->TOE2(3)         --------->HSFB2a(2)                       --------->ANAC46   <---------At4g35610<---------MYB59 ----------GT1<---------ICU4                     ---------->DOF2      --------->At4g35610--------->TOE1(3)   taaaccatcttcttgaacattactcatcatcgtctctaattgttcgagtttcaaagcaacctccgccatctccgatgacctaactttgtaacctaaaaca  257200                                                                                                   <-                                                                                                 ----                                                                                     >>>>>>>>>TBF1<--                                                                             <---------YAB1      <---                                                                          <---------YAB1        -----                                                                         <---------TOE2(3)     ------                                                  <---------ICU4        --------->YAB1        <------                            --------->DEAR3(1)    --------->YAB1      <---------WOX13(1)      -------                   <-----------GT1          <-----------GT1   <----------DOF2--------->ICU4   <------                 <-----------HVH21    <----------DOF2       <---------YAB1--------->ICU4      <------   --------->GLK1(2)     <---------ALFIN1 <-----------GT1 <---------CCA1(2)--------->YAB1     <------   gcgagaagctcgtcgtccatgttacctccaccgtcttcttcttttttcaccatcatcatcttatctttagagattgatgatgatgaagaagaagtcccgt  257300 <------MYB83 <------MYB46(1) -------P ----->MYB55(2)                                                                  <---------ARR14(2) -----GAMYB                                                                      <---------AGP1 ------MYB46(3)                                                                  --------->ARR11(3) ---->ALFIN1                                                                     --------->ARR14(2) --->LBD16                                                                  ------>ZmHOX2a(2) ---ANAC58                                                                --------->ARR11(3)    <---- -->O2                                                                    <---------ARR11(3)   <----- ---O2                        ------>ZmHOX2a(2)                     <------MYB46(1)         <-------- ---ANAC58                  <---------ARR11(3)--------->At4g35610   <------MYB83<---------CCA1(2)  <- ---ANAC46                  --------->ARR11(3)<---------At4g35610  --------->MYB59 ------>ZmHOX2a(2)   ggttggacaatcgaccttggaattggtgatgatctctcttcatttttcagctatgagtttcgattagattaggtctgatcttggatctagggttttgcct  257400                        --------->ICU4          <---------ANAC46             >>>>>>>>>TBF1 ------DOF2        <---------LBD16  >>>>>>>>>TBF1 ----DAG2 <---------ANAC58 <---------REM1(1)        ----------->HVH21    --------->YAB1 ---GT1   <---------ANAC58 <---------YAB1         <---------ANAC55(2)  --------->GLK1(2) -----------------------ANAC81<---------TOE2(3)  --------->TOE1(2)    <---------GLK1(2)   tttttttagtttgtgtgtgtttggggatgatgaaggaagaagaagaaggaacatgtgacttctctatgtgaagaatcttaagagcaaatgggtttgggat  257500                                                                <---------AHL20(2)                                                                <--------ATHB1                                                                <---------ICU4                                                                --------->ATHB51                                                                --------->AHL20(2)     <---------AHL20(2)                                                               --------->ICU4          --------->AHL20(2)                                                 *TSS          <---------YAB1         --------->AHL20(2)                                                <---------HSFB2a(2)                   <---------AHL20(2)                                       <---------ICU4        --------->YAB1        --------->YAB1                                      <---------YAB1         <---------ICU4        --------->AHL20(2)               <-----------GT1      <---------ICU4          <---------YAB1      --------->YAB1     <----------DOF2                --------->YAB1          --------->ICU4     --------->ICU4    <---------ANAC58               <---------ATHB12       <---------ICU4       <---------YAB1    <---------ANAC58             --------->WOX13(1)    --------->YAB1        --------->YAB1 <---------WOX13(1)        <---------ALFIN1--------->YAB1 --------->YAB1   --------->AHL20(2)     ---   tggattgcttttgtttttcactgctactaccacttcaatcatcattcataccagaactaataataataatttctcaaaataataataaaaaaatttctca  257600                                                 <---------CCA1(1)                                                <---------AHL20(1)                  <---------HSFB2a(2)       ---------->DOF2               <-----------GT1           --------->AHL20(2)          <---------AHL20(2)         --------->AHL20(2)          --------->AHL20(2)        --------->YAB1          <---------AHL20(1)       <---------YAB1<---------RVE1(1)      <---------AHL20(2)        <---------AHL20(2)      --------->AHL20(2)        --------->AHL20(1)        --------->HSFB2a(2)  --------->AHL20(2)            <---------AHL20(1)        <---------HSFB2a(2)        ---------->DOF2 --------->AHL20(1)             --------->AHL20(2)   <---------AHL20(2)        ---------->DOF2 <---------AHL20(1)          <---------AHL20(2) <---------ARR11(3)   --------->AHL20(2)          ---- --------->ARR11(3)        --------->AHL20(2)   --------->ARR11(3)   <---------AHL20(2)        <----- <---------ARR11(3)        <---------AHL20(2)   --------->AHL20(1) ------------------------>ANAC81  < ------>AHL20(2)  --------->HSFB2a(2)<---------AHL20(2)  <---------LBD16  ---------->DOF2     -------   aaaaatatttattttatttaccagaaaatataaatttattaaaataaaaagatatttattctggatgaaaattaaaaaaagaaaagaaaaagaatggtgg  257700                                            <-------TEIL                                ---------->DOF2                             <---------HSFB2a(2)                             --------->HSFB2a(2)                             --------------->AGL15                             <---------------AGL15                            ----------------->AGL2                                                  <           ------>NtERF2   ------->TEIL >>>>>>>>>MYB98                                           <---          --------->DEAR3(1)----------------->AGL1                    --------->At5g28300        ---- ------->HVH21         <---------------AtSPL8                        ----------->GT1             <--- ----MYB46(3)    <---------ATHB12   ----------->GT1              --------->DAG2                  ---- ---------bZIP60(2)    --------------->AtSPL8   <-------TEIL     <---------TOE2(3) ------->GAMYB<---- -->ALFIN1--------->MYB46(3)----------------->AGL3      ---------->DOF2      <-----------GT1    -----   tgatggggctcgacgaccaatgaataatgtaccagaaagagtaacatacatacacatctaaagtgataaggctgtgaaattacaacacacattactaatt  257800                --------->ANAC58             --------->ARR14(2)             <---------ARR14(2)    <---------AHL20(2)        --------->DAG2   <---------YAB1--------->TOE2(3)  <---------AHL20(2)    --------->AHL20(2) ---------YAB1  --------->ANAC55(2)                                               --------->ATHB12 ------AHL20(1) --------->ANAC58                                                  --------->YAB1 ----->AHL20(1) ----------->GT1                                                  <-------TEIL ------AHL20(2) --------->ANAC46                                            <---------AHL20(2) ----->AHL20(2) <---------ANAC55(2)                                         <-----------GT1       <-- -----AHL20(2)  --------->ANAC55(1)----------->GT1<---------GLK1(2)      <---------ICU4   <---------bZIP60(2) ---->AHL20(2) <-------TEIL  ---------->DOF2   --------->YAB1           --------->ICU4    <---------ANAC46   ttatttttattttcatatacgtaaaaaaaaataaagtgtgtaaaaacatttagaatttctgtatatttgaagtgatatttacattcattgtgatgtgtat  257900                                                              <---------AHL20(1)                    ------>ZmHOX2a(2)                         --------->AHL20(2)                   <------ZmHOX2a(2)                          --------->ARR11(3)                   --------->CCA1(2)                          <---------ARR11(3)              <------                  <---------ARR11(3)                          --------->AHL20(1)              <------                  --------->ARR11(3)                        --------->ARR11(3)                <------                  <---------ARR14(3)             ------>ZmHOX2a(2)                            -------                  --------->AGP1               <---------ARR14(2)                             <------                  --------->ARR14(2)           <---------ARR11(3)                             -------                  <---------AGP1               --------->ARR11(3)                            --------                  --------->ARR14(3)           --------->ARR14(2)   <---------YAB1           <-------            <-----------GT1----------->GT1     <---------AGP1--------->CCA1(2)             --------->YAB1          <---------WOX13(1)                  <---------CCA1(2)  <---------AHL20(2)      --------->AHL20(2)       <---------YAB1----------->HVH21<---------AHL20(2)    <---------ARR11(3)     <-----------GT1 -------AHL20(2)  <---------ARR14(2)  --------->AHL20(2)  ----------->GT1   ---------->ID1<---------AHL20(2)   ttttttgttttgatttacaagatctgatggagtaatataaaaaattgtggatctactgaatagatatattatgagtttgtttttttaactatataataat  258000  Previous    Next  AGI:  At2g01570.1    Description:  RGA1 (REPRESSOR OF GA1-3 1); transcription factor. Identical to DELLA protein RGA (RGA) [Arabidopsis Thaliana] (GB:Q9SLH3;GB:O23642;GB:O23725;GB:Q941D4); similar to GAI (GA INSENSITIVE), transcription factor [Arabidopsis thaliana] (TAIR:AT1G14920.1); similar to DELLA protein RGA1 (RGA-like protein 1) (BrRGA1) (GB:Q5BN23); similar to DELLA protein GAI [Gossypium barbadense] (GB:ABG26370.1); similar to DELLA protein RGA2 (RGA-like protein 2) (BrRGA2) (GB:Q5BN22); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 255248    to: 257549    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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