Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <----------ID1                                           --------------->AGL15                                          ----------------->AGL2                         <-----------GT1  <-----------------AGL3          --------->ARR11(3)              ----------------->AGL1          <---------ARR11(3)              ----------------->AG<---------GLK1(2) <---------ZAT6   --------->REM1(1) <---------ARR11(3)   ----------------->AGL3            <----------DOF2 ----->DOF2          <---------GLK1(2)    <-----------------AGL2     <----------DOF2 >GT1    <---------GLK1(2) --------->ANAC46<---------------AGL15   ------>ZmHOX2a(1)     <---------AHL20(2)   aagcttcaacaaaatctcacacagattttacgaaaaacacattagccaaatatagaaggaaaaagattcctctttgaactttgtgttatattttctttgg  30319000                 --------->ALFIN1                <------NtERF2              <---------DREB2C(2)              <---------ANAC46              <---------DEAR3(1)             <------NtERF2             --------->ATERF1(1)             <---------ABI4(1)           --------->ALFIN1           ----------->HVH21      --------->ATERF1(1)           <---------AtMYB61      <------NtERF2           <---------DEAR3(1)    --------->LBD16          --------->ATERF1(1)    <---------ATERF1(1)        <---------DEAR3(1)     <---------LBD16       <---------LBD16   <---------ZAT14    <---------At4g35610  --------->ZAT18              --------->YAB1    --------->ANAC58    --------->At4g35610  --------->ZAT14       --------->ANAC46      <---------ZAT18    --------->ZAT2    <---------ANAC58        XXXXXXXXXXXXXXXXXXXX>MIR841    <---------ZAT2    <---------ANAC58  --------->ANAC58          <---------ANAC58   --------->MYB111(2)<---------ANAC46  --------->ANAC58 <-----------GT1--------->ANAC58  <--------P------>NtERF2--------->REM1(2) <-----------GT1        <---------ANAC58          --------- <---------MYB52(1) <---------ANAC46------>NtERF2<---------ZAT18  <---------ANAC46        -------->P   acaggtagctgcggtggcggtgttgtgtgtacagccggagccaagttacagaccacttataaccgatgtcttgcactcactcatccctcttctaccagta  30319100                     <---------AHL20(2)                  --------->ARR14(2)                  <---------ARR14(2)                --------->LBD16               <---------ANAC58               <---------ANAC58               <---------ANAC46              <---------LBD16                                                     ------->TEIL          --------->ATHB12                                         <------ZmHOX2a(2)   ---------->ID1          <---------ICU4                                <---------ANAC46 <---------ANAC46         <--         <------ZmHOX2a(2)                              <---------ANAC58 <---------ANAC58         <--         <---------YAB1                      <----------DOF2 <-----------GT1   <---------YAB1     <-- >ZAT6<---------MYB46(3)                 <----------DOF2<---------ANAC58 <---------ANAC58     <------   gaactcggtggatcattgcggattttataaaaaaacatttcccctttctttttttttttcttgtaacagatcaatgcgtttatgaatttgtctcttatgt  30319200              <---------AHL20(1)              --------->AHL20(1)       --------->LBD16      <---------HSFB2a(2)      --------->HSFB2a(2)                                                                       <----      <---------ANAC46                                                                          <----     <---------LBD16                                          <----------DOF2                   <---- ----MYB46(1) <---------AHL20(2)                             <---------ANAC58     --------->ANAC58  - -------MYB46(3) <---------YAB1              --------->AHL20(2)                   --------->ANAC58<-- ----MYB83  --------->GLK1(2)<---------AHL20(2)              <---------ANAC58 --------->CCA1(2)------ -----RAV1(1) --------->AHL20(2) <---------ICU4  <---------LBD16      <---------ARR14(2)   <---------ZAT6   tggttcttccggagaatttattgttgtatgtttaatcactgctacaaaaaattcggaagttttgcttaaatggaaccgagagacaagttagtagagtttg  30319300                                                  --------->WRKY38(1)                                                  --------->WRKY45                                  <                                      --------->AHL20(2)                                         <---    ---------->DOF2     <----------DOF2  --------->AHL20(2)                                      ---- --MYB46(1)  ----------->GT1         <---------AHL20(2)   --------->YAB1                   --------->AHL20(1) -----MYB46(3)----------->GT1    --------->AHL20(2)   <---------DAG2          <---------ANAC46 <----- --MYB83    <---------TOE2(3)    ----------->TBP  --------->WRKY12            --------->ALFIN1 ------ ---------->GT1    ---------->DOF2   --------->AHL20(2) <-----------TBP<-------GAMYB   --------->AHL20(2) ------P    <---------TOE1(3)    <---------AHL20(2)   <----------DOF2 --------->MYB52(2)   <---------AHL20(2) --->MYB59---------->DOF2   >>>>>>>>>MYB98       --------->DOF5.7(2)  <---------MYB46(3)   --------->AHL20(2)   gttagtaaaagttaaaggtttaaaagctttaacatataaataaataaaaacgttgactttttataacagagtttgttgttgtggggaaatgaattaatta  30319400                                                                  --------->LBD16                                                                <---------LBD16                                                              <---------ARR11(3)                                                              --------->ARR11(3)                                                              --------->ARR14(2)           <---------MYB52(1)                                --------->CCA1(1)   --------->TOE2(3)                                         --------->GLK1(1)   --------->TOE1(3)                                         <---------GLK1(1)   <---------DAG2                                            <---------RVE1(1) ------->TEIL                                                --------->RVE1(1) -----------GT1                            --------->HSFB2a(2)<---------ARR14(2) ------TOE2(3)               <---------AHL20(2)             <---------ARR11(3) ----------->AtSPL8         *TSS  <-----------GT1       ---------->DOF2                      -------- ----AHL20(2)               --------->AHL20(2)      ---------->DOF2                        <---------YAB1 --->AHL20(2)           ------>ZmHOX2a(2) <-----------GT1   --------->ARR11(3)      ----------->GT1   atgaaccttatccgttttgtcgatgatcgataaaattttcaatttctcgattcccaaagaaagatatctgggaattagacaaggagtagtaatatgaaag  30319500                                                                                 --------->HSFC1(2)                                                                                 <---------HSFC1(2)                                                  --------->YAB1                 --------->HSFB2a(1)                                                  <---------ICU4          ------>ZmHOX2a(1)                                                 <---------YAB1        ------>ZmHOX2a(1)                 <---------At4g35610           --------->YAB1   --------->ARR14(2)          --------->ARR14(2)                  ===================================HOX2a_HOX2a      <-----------RAV1(2)                     <------ZmHOX2a(2) <---------ARR11(3)            -------     <------ZmHOX2a(2)                    <------ZmHOX2a(2)     --------->ARR11(3)            <------    --------->ARR14(2)                    ====================================HOX2a_HOX2a     -------    <---------ARR14(2)                   <---------ARR11(3)    --------->YAB1<---------ETT(2)<-------   <------ZmHOX2a(1)  --------->GLK1(1)  --------->ARR11(3) ---------->DOF2 --------->HSFB2a(2)     < -->DOF2 <------ZmHOX2a(1)   ---------->DOF2  ================================HOX2a_HOX2a    <-------   atggaggatcaggaaacgaagcggataaccaaaaaaccgtcaagatcgatcatcatcagtctcaaagatattcctcctctcgacccttcttctattccct  30319600          <-------TEIL      --------->ICU4       <---------ARR14(2)  --------->At5g28300      --------->ARR14(2) ----------->GT1           <---------GLK1(2) --------->YAB1         --------->TOE2(3) -------->AGL15         --------->YAB1                        ----------->RAV1(2) ---------AGL15        <---------ATHB12                       --------->At4g35610 ---------->AGL1      -------->P                    --------->AHL20(2) ----------AG         ------>MYB46(1)               <---------AHL20(2) ---------TOE2(3)     ------>MYB83                  --------->AHL20(1)                            <-- ----------AGL1  --------->ANAC46   <----------DOF2--------->AHL20(2)            <---------KAN4(2)---   ctatggtaaatattcattcactccaaccatattctcttctttctcgctaacaaaaaaattgatcatctgggtttgaaacagagaacaatctctgcgtttt  30319700                                                         <---------ARR11(3)                                                         --------->ARR11(3)                                                        --------->CCA1(1)                                                     <---------ICU4                                                     <---------AHL20(2)                                                    --------->AHL20(2)                                                    --------->ICU4                                <--               <<<<<<<<<TBF1                      --------->YAB1     <---------ANAC58           <----      <---------At4g35610                      ----------->GT1       <---------ANAC58    --------->MYB46(3) -------------AGL15                            --------->YAB1    <----------DOF2        <<<<<<<<<<<<< ------------>AGL15                     ----------->GT1 --------->RVE1(1) <-----------HVH21--------->MYB52(1)   ctatttgtagatgattcttcttctgtgatttggctatatcatgggttaatagtaataaatatctcaactttgcttctgtcaattgttagaaaccaatggc  30319800       --------->YAB1       <---------ICU4      <---------YAB1    --------->YAB1   <------ZmHOX2a(2)  --------->ARR11(3)  <---------ARR11(3) ----NtERF2 -----ANAC46                --------->GLK1(2) <<<<LFY      --------->ALFIN1                             >>>>>>>>>TBF1             --------->HSFB2a(2)   gcaagatcatcataatgtgggaatgcagagattccaagagaagactgacttcaagtttgaagaagaagacaatgccatttcttccttctctaacattcaa  30319900  Previous    Next  AGI:  At1g80640.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G25220.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79180.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 30316558    to: 30319267    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g80650.1    Description:  RTL1 (RNASE THREE-LIKE PROTEIN 1); double-stranded RNA binding. similar to double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana] (TAIR:AT4G00420.3); similar to double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana] (TAIR:AT4G00420.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO67716.1); contains InterPro domain Double-stranded RNA-binding-like; (InterPro:IPR014720); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) Range:  from: 30319428    to: 30320711    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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