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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                              --------->ARR14(2)
                                                              --------->GLK1(2)
                                                             --------->ARR14(2)
                                                             <---------ARR14(2)
                                                             <---------GLK1(2)
          <---------ANAC46   --------->DAG2              <------NtERF2
   --------->YAB1           ---------->DOF2              --------->At4g35610                       -
  <---------YAB1      ----------->GT1                   ----------->RAV1(1)             <---------ANAC58
--------->YAB1      <---------WOX13(1)                <---------At4g35610               <---------ANAC58
---------->GT1    --------->ATHB12                    --------->At4g35610          --------->MYB52(1)
---------YAB1    --------->ICU4                     ---------->CDC5        <------NtERF2<---------DEAR3(1)
----ZmHOX2a(1)   <---------YAB1                   <-----------HVH21      <---------ANAC46<-------GAMYB
 
ggatgataatattatgtgtattgattggaaaaaaagtgagaagaagagaacaccttcagcggcagaatcggacttgtcgtcgaagccaagggcgttgtcg  30038300
                                                             <---------HSFB2a(1)
                                                             --------->HSFB2a(1)
                                                           --------->GLK1(1)
                                                      ------>ZmHOX2a(2)
                                                      =================HOX2a_HOX2a
                                                     <------ZmHOX2a(2)
                                                     --------->CCA1(2)
                                                     ==================HOX2a_HOX2a
                                 --------->ATHB12   --------->AGP1
                                --------->AHL20(2)  <---------AGP1 <---------HSFB2a(2)
                          --------->LBD16--------->At4g35610<---------ARR14(2)
                          ------>ZmHOX2a(1)------>NtERF2--------->LBD16
                          <---------HSFB2a(2)       <---------ARR14(2)
                          --------->HSFB2a(2)       --------->ARR14(2)
                          ==================================HOX2a_HOX2a
                          ===================================HOX2a_HOX2a
                         <---------LBD16 <---------At4g35610--------->ARR14(2)
                        ----------->RAV1(2)----------->RAV1(1)  ------>ZmHOX2a(1)          ------>MYB83
                        ===============================RAV <---------GLK1(1)               ---------
               <-----------GT1  --------->AHL20(1)  --------->ARR11(3)                     ---------
       --------------------->WRI1<---------AHL20(2) <---------ARR11(3)                     ---------
  <----------DOF2  ------->GAMYB<---------AHL20(1) <---------GLK1(1)--------->LBD16  --------->ZAT14
-------->GLK1(2)<-----------GT1 <---------AHL20(2)----------->ARR10--------->HSFB2a(2)     ------>MYB46(1)
 
aaattcttttcaatgtttttaacgctctcctggaatttattgacagcgccagtgagatctgggaatcctcccagagaaactttgccactgaaccaagcca  30038400
                                                             <-------TEIL
                                                            <------ZmHOX2a(2)
                                                           --------->ARR14(2)
                                                           --------->AGP1
                                                           <---------ARR14(2)
                                                    --------->LBD16                                -
                 --------->HSFB2a(2)                ----------->HVH21                         ------
                 <---------HSFB2a(2)                <---------SPL7                            ------
                <---------LBD16                   <---------LBD16                    --------->ANAC58
              --------->ARR11(3)                  --------->At4g35610                --------->ANAC58
              <---------ARR14(2)                 --------->MYB52(1)                  --------->ANAC46
             <---------CCA1(2)                  <-----------GT1                <---------ANAC58   --
>ANAC58    --------->CCA1(2)                 --------->GLK1(1)                 <---------ANAC58  ---
>ANAC58   --------->ARR11(3)                 <---------GLK1(1)            <-----------RAV1(1)-------
>ANAC46   <---------ARR11(3)        <---------CCA1(2)      <---------ARR11(3)  <---------ANAC46<----
 
tctctacttgagagatatatctggaaactcgatcgacttaaatctcagaaatcaccggaccagatccatctccagccctgtggcttccaaggaaaacaat  30038500
                                      <---------ICU4
                                      --------->ATHB51
   <---------ATHB12                   --------->YAB1
  ------>MYB46(1)                     --------->AHL20(2)
  ------>MYB83                        <--------HAHB4
--------->AtMYB61                     -------->ATHB1
-------->MYB46(3)      --------->TGA2(1)
--->ANAC58             <---------bZIP60(1)                                                        <-
--->ANAC58             --------->bZIP60(1)                                                       <--
------>P      <------ZmHOX2a(2)      <---------ATHB51                                            <--
------>WOX13(1)------>ZmHOX2a(2)     --------->ICU4          --------->DAG2               <---------YAB1
-->WOX13(1)  --------->ARR11(3)      <---------ATHB12       ---------->DOF2            =============
-----ATHB12  <---------ARR11(3)    --------->WOX13(1)<-------GAMYB                     <------ZmHOX2a(2)
 
caaccaatcgagtttagatcccaattacatcactgaatcaattattaagacgaggcgattggataaagcagaatagagctatctattgggatcatcaatg  30038600
                      ====================HOX2a_HOX2a
                      ------>ZmHOX2a(1)
                 --------->DEAR3(1)
          <---------GLK1(1)                --------->LBD16-------->P
          --------->GLK1(1)               <---------HSFB2a(2)
          --------->At4g35610<---------ANAC46             ------>MYB46(1)
        <------ZmHOX2a(1)   <------NtERF2 <---------ANAC46------>MYB83
        ==================================HOX2a_HOX2a    <---------ALFIN1
  <---------HSFB2a(2)<---------ANAC58     --------->HSFB2a(2)
  --------->HSFB2a(2)<---------ANAC58 <---------GLK1(1) --------->MYB46(3)               -----------
--------SPL7  <---------ANAC58     ------>ZmHOX2a(2)  --------->PCF2                  ==============
-------ANAC58 <---------ANAC58     ===================HOX2a_HOX2a                     <------ZmHOX2a(2)
-------ANAC58<-------TEIL  <---------RAP2.6(3) <------ZmHOX2a(1)      <----------DOF2 *TSS
===============HOX2a_HOX2a ------>NtERF2 <---------LBD16<---------MYB55(2)           --------->AGP1
 
gcttacgagaaggagatgcgtcgtccttgccgtcgtgatcgaattccggaggagagagacccacccctatgtgttttatgtttttttagatccaacaaaa  30038700
                             <---------SPL7
                             <------NtERF2
                             --------->At5g28300
                            <---------MYB46(3)
                            <---------DEAR3(2)
                        --------->DEAR3(1)
                        <---------ATERF1(2)
                        --------->ATERF1(2)
                       --------->DEAR3(2)         --------->LBD16
                       <------NtERF2            <---------LBD16
                      --------->MYB52(1)------>NtERF2
                      <---------ATERF1(1)<------NtERF2
     ------>ZmHOX2a(1)------>NtERF2    <---------ANAC46
     <----------DOF2 <---------ALFIN1  <---------DEAR3(1)
 <---------ARR14(2)------>NtERF2  --------->MYB52(1)
 --------->ARR14(2)<-----------HVH21   --------->DEAR3(1)                    <---------YAB1
>RAV1(1)   <-----------GT1 <---------DEAR3(1)  <---------ANAC46       <---------ANAC58          <---
============HOX2a_HOX2a--------->ATERF1(1) <---------DEAR3(2)         <---------ANAC58         <----
 
tccaaatccttttttttccctcggccaccggcggtacaaacggcgtcgtttcgcggattagaaaaacgttctgtcttgatatcatttacttcattctaag  30038800
                                                                     <-----------GT1
            <---------AHL20(2)                                 <-------TEIL
            --------->AHL20(2)                                 ------>ZmHOX2a(2)
  <---------AtMYB61                                           <------ZmHOX2a(2)               <-----
<----------DOF2            <---------ANAC58                  <---------ARR14(2)    <-----------GT1
------RAP2.6(2)            <---------ANAC58 ---------->DOF2  --------->ARR14(2) --------->ANAC58
-----At4g35610  --------->AHL20(2)   <---------MYB52(1)     <------ZmHOX2a(1)   --------->ANAC58 <--
 
cggctttggtctgaattttttatatacaaggcctgtctccgtttttgtaaagggaaaacagtaggatccattttagcctctgtaagtaacaatattgggc  30038900
                        <---------At4g35610            --------->ANAC58
                        --------->At4g35610            --------->ANAC58
                        <------NtERF2              --------->ANAC58
                       --------->ANAC58            --------->ANAC58
         --------->ANAC58       --------->ANAC46  --------->SPL7
         <-----------------AGL1 --------->ANAC58 <---------ALFIN1
       <---------ALFIN1--------->ANAC58         --------->LBD16
      <---------ZAT18 --------->ATERF1(2)   <---------ARR14(2)
 ---------->DOF2     --------->ATERF1(1)    --------->ARR14(2)        --------->TOE2(2)
----PCF2 --------->ANAC58       --------->ANAC58<---------SPL7 --------->ANAC58
----NtERF2          ------>NtERF2         <---------DEAR3(2)   --------->ANAC58              <------
 
ccctaaaagcccacccattttggggccagcaaaccaaggcaccctcggttccgcacgctcgctaagacgctaacctatgcatatgttgatatgttttttc  30039000
                                                                                                  <-
                                                                         ------>MYB83          <----
                                                                ----------->GT1                -----
                                                           <---------ANAC58                 --------
                                                           --------->ANAC55(2)       <------ZmHOX2a(2)
                                                           <---------ANAC55(1)      --------->ARR11(3)
                                              <-------TEIL <---------ANAC46        <---------At4g35610
                                          ------->TEIL     <---------ANAC55(2)     --------->At4g35610
                                    --------->ICU4         <---------ANAC58 ================HOX2a_HOX2a
               --------->YAB1     --------->YAB1  --------->ARR14(2)     ------>MYB46(1)    --------
  <----------DOF2 --------->ATHB12<---------ICU4  <---------ARR14(2)  --------->MYB46(3)<---------YAB1
-----GT1     ------->TEIL  <---------YAB1 <-------TEIL    <---------TOE1(2) ------>ZmHOX2a(1) <-----
 
tcttccttttggtatgaatcttgatttgttttgatactcatgatgtacattcgtattctcttacgtattgtaaaccatcctatttcagatcacgattata  30039100
                                                                          --------->REM1(1)
                                                                        --------------->AGL15
---------DOF2                                                           ============================
-----ARR11(3)                                                    --------->AHL20(2)
---->ARR11(3)       <---------YAB1                    ----------->GT1   <---------------AGL15
->YAB1<-----------GT1   <-----------GT1      <-----------GT1     <---------AHL20(2)
->AHL20(2)         --------->AHL20(2)       --------->AHL20(2)--------->TOE2(3)            ---------
----CCA1(2)  <-----------GT1          <-----------GT1 <---------ZAT6   <-----------------AGL2
 
tctttacatttacatttttcatttttatttctgtttgaatgttacaatttactagtagagttattcattaaaatactacaactggtatacagaaatgtaa  30039200
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AGI:  At1g79830.1   
Description:  GC5 (GOLGIN CANDIDATE 5). similar to LINC2 (LITTLE NUCLEI2), protein binding [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to Os05g0559900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056303.1); similar to tRNA-binding arm; t-snare [Medicago truncatula] (GB:ABD32289.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48533.1); contains domain Spectrin repeat (SSF46966)
Range:  from: 30032753    to: 30038687    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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