Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    <       ---------->ID1                                                                    <---------At4g35610      <-----------GT1                                                                    --------->At4g35610 --At4g35610                                         ------>ZmHOX2a(1)                <------ZmHOX2a(1) ->At4g35610     <----------DOF2            ------>ZmHOX2a(1)                       <---------TOE2(3)   tctatgtttttcgtcttgcctttgtttctctaactccctcttcttcctaagcctcctctcttcttcggtctcgattttcttagaatgaggaagatgagac  30008500                                                                                                    =                              --------->ANAC46    <---------ANAC46                                  -                              --------->ANAC58    <---------ANAC58                                  <                  <------ZmHOX2a(2)          -------->P                                             =                  --------->ARR14(1) ------>NtERF2<---------ANAC58                                ---                 --------->ARR14(2)  --------->LBD16                                              ---    <---------MYB46(3)        --------->ANAC58   --------->ZAT2                                   <--   <---------AtMYB61         <---------ZAT18 ------>MYB83              <-----------HVH21         <---   --------->ALFIN1------>ZmHOX2a(2)--------->ANAC46          <----------DOF2                 =======   <---------DEAR3(1)--------->LBD16--------->ANAC58      --------->PCF5<---------YAB1        <------ZmHOX2a(1) -------->ALFIN1 <---------ARR14(2) --------->ANAC58     --------->ATERF1(1)              <---------ANAC46 ---------AtMYB61------->TEIL--------->ZAT18 ------>MYB46(1)<------NtERF2--------->ATHB12<------NtERF2 -----------RAV1(1)<---------LBD16<---------ATERF1(1)   <---------ATERF1(1)            <---------ANAC46   ctgtggtggtgcttcgatggatccggtttagcacgctcccgccttccaacctgcttggaggcccctttctcgtggtcattgggaccctggtgtcgaggag  30008600                                     --------->ALFIN1                                    <------NtERF2                                  <---------ANAC58                                  <---------ZAT2                                  <---------ANAC46                                  <---------At4g35610                               ----------->HVH21                                    --------->ZAT2                               --------->ALFIN1                                   ------->PIF5                               <---------DEAR3(1)                                 <-------PIF5                              --------->ATERF1(1)                                <------NtERF2                             <------MYB46(1)                                     ----------->RAV1(2)                             --------->ZAT2                                      <---------At4g35610                             <---------bZIP60(2)                                <---------ATERF1(1)                             <------MYB83 <------ZmHOX2a(1)                    --------->ATERF1(1)                            <---------DEAR3(1)                                 --------->PCF5             --------->ALFIN1<---------ZAT2--------->ALFIN1                   ------>NtERF2        --------->MYB52(1)  --------->MYB111(2)                              --------->TCP20 --------->HSFB2a(2)        <---------AtMYB61   <---------ANAC58             <---------PCF5 <---------HSFB2a(2)        --------->ALFIN1 <------ZmHOX2a(1)               <---------ATERF1(1) ========================HOX2a_HOX2a--------->ATERF1(1)   <-------GAMYB      --------->TCP15(1) ----->ZmHOX2a(2)   --------->ZAT2<---------ANAC58    --------->At4g35610    <---------PCF2 ---------LBD16     <---------ZAT2<---------DEAR3(1)  <---------ZAT2  <---------ARR14(2) =====================HOX2a_HOX2a<------NtERF2 --------->ZAT2         --------->ARR14(2) ------>GLK1(2)     --------->At4g35610 --------->ALFIN1 ----------->GT1    <---------TCP23        <- ------>ARR14(2)    <---------At4g35610<------ZmHOX2a(1) <---------MYB46(3) <---------TCP15(2)------- -------ARR14(2)--------->ALFIN1 --------->ATERF1(1)  <---------At4g35610 --------->ALFIN1    ------- ---ZmHOX2a(1) <------ZmHOX2a(1) <---------LBD16<---------ANAC58   <---------TOE2(3)--------->At4g35610 ======HOX2a_HOX2a<------ZmHOX2a(1)--------->LBD16    --------->ZAT2 <------ZmHOX2a(1)<---------YAB1   gatcgggaacgagcggaggaggagctgagggaggtggcggaggaggaggagcttggagctggttgaattgaggatagtggggcccctgctgatagtaagc  30008700                  <---------ANAC46                  --------->ALFIN1                  <---------DEAR3(1)                 --------->ATERF1(1)                 <---------LBD16                 <---------At4g35610                 --------->At4g35610                 <------NtERF2                 <---------ABI4(1)                <---------RRTF1(1)                <---------DEAR4(2)                <---------RAP2.6(1)                ------>NtERF2                <---------ORA47(2)                <---------RAP2.3(1)                <---------ATERF1(1)               <---------ANAC46               --------->DEAR3(1)               <---------RRTF1(2)               <---------ATERF1(2)               --------->ATERF1(2)               <---------RAP2.3(3)               <---------DEAR3(1)               <---------RRTF1(3)               <---------RAP2.6(2)               --------->ALFIN1               <---------RAP2.3(2)              <---------At4g35610              --------->RAP2.3(1)              --------->DREB2C(1)              --------->At4g35610              --------->ATERF1(1)              <---------ABI4(1)              --------->DEAR4(2)             <---------DEAR4(2)             ------>NtERF2                                                                --------->ALFIN1             <---------ORA47(2)                                                           <---------DEAR3(1)             <---------RRTF1(1)                                                           <---------ANAC46             <---------RAP2.3(1)                                                         <------NtERF2             <---------ERF1                                                              --------->ATERF1(1)             <---------ATERF1(1)                                                        <---------ATERF1(1)             <---------RAP2.6(1)                                                       --------->ALFIN1            <---------DEAR3(1)                                                         <---------DEAR3(1)            <---------RRTF1(3)                                                        <---------ABI4(1)            --------->ATERF1(2)                                                       --------->ATERF1(1)            <---------ATERF1(2)                                                     --------->ALFIN1            <---------RAP2.3(3)                                                    <------NtERF2            <---------DREB2C(2)                                                    --------->ATERF1(1)            <---------RAP2.3(2)                                                   ------>NtERF2            <---------RRTF1(2)                                                   <---------DEAR3(1)            <---------RAP2.6(2)                                                  <---------ANAC46            --------->ALFIN1                                                    <---------LBD16 <----           <------NtERF2--------->ARR14(2)                                      <------NtERF2  ------           <---------ABI4(1)                                                    --------->ATERF1(1)           --------->ATERF1(1)                        <---------ANAC46         <---------RAP2.3(1)          <---------DEAR4(2)                         <------NtERF2             <---------RRTF1(1)         <---------DEAR3(1)                         <---------MYB46(3)         ------>NtERF2  <------         --------->ALFIN1<---------GLK1(1)         --------->ALFIN1           <---------RAP2.3(3)        --------->ATERF1(1) <---------------AtSPL3 <---------ANAC46           <---------DEAR3(1)<----        <------ZmHOX2a(1)--------->CCA1(2)       <---------MYB46(3)           <---------RAP2.3(2)      --------->ALFIN1  <---------ARR14(2)       --------->MYB55(2)        --------->MYB46(3)--------     <------ZmHOX2a(1) <------ZmHOX2a(1)        --------->ALFIN1         <---------DOF5.7(2)<------NtERF2   --------->ALFIN1 <------NtERF2               <---------DEAR3(1)       --------->MYB52(1) --------- --------->LBD16<---------ERF1               <---------DEAR3(1)   --------->ALFIN1<---------MYB46(3) --------LBD16<------NtERF2<---------YAB1 ----------->HVH21   <-----------RAV1(2)--------->ALFIN1 -->ANAC58<---------ATERF1(1)        <---------MYB46(3)    <------ZmHOX2a(1)  <---------RRTF1(3)<---- -->ANAC58<---------RAP2.3(1)      <-------GAMYB<---------AtMYB61<------ZmHOX2a(1)--------->LBD16----   atgcggaggaggaggcggcggcggaggatatgagtacggttgatgcgacggtggtgggggaggaacaggagggggtaacgacggcgggggaggcggaggg  30008800                                               <---------SPL7                                               <---------MYB52(1)                                              <---------DEAR3(2)                                             --------->ATERF1(2)                                             --------->RAP2.6(2)                                             <---------MYB46(3)                                             <---------ATERF1(2)                                            <---------ANAC46                                            --------->SPL7                                           ------>NtERF2                                           --------->ATERF1(1)                                           <------NtERF2                                          <---------SPL7                                          <---------ATERF1(1)                                          <---------DEAR3(2)                                          ------>NtERF2                                         --------->DEAR3(1)                                         <---------DEAR3(1)                                         <---------RAP2.6(2)                                   --------->ARR11(1)                                   --------->ARR14(2)--------->ANAC58                         <------ZmHOX2a(1)<---------RAP2.3(1)                       <---------TOE2(3) <---------RAP2.3(2) -----PCF2          <---------ANAC46 --------->SPL7  --------->bZIP60(1)      ------>ZmHOX2a(2) --->ATERF1(1)     <------NtERF2   <---------ARR14(2)--------->ANAC46        <---------At4g35610 ---ATERF1(1)      --------->At4g35610  --------->ATERF1(1)       --------->ZAT14 -----PCF5         <---------At4g35610 <---------RAP2.3(1)        <---------ZAT18              ------ ->ALFIN1         <---------MYB46(3)--------->ARR14(1)------>NtERF2 ------->TEIL               ------ >ATERF1(1)      <---------RAP2.6(2)--------->CCA1(2)<---------bZIP60(1)     --------->At4g35610  *TSS ------ID1    <---------AtMYB61   <------ZmHOX2a(1)  --------->ANAC58 <----------DOF2  --------->TOE2(3) -->NtERF2    --------->ALFIN1 <------ZmHOX2a(1) --------->SPL7   <---------ZAT14     <---------ANAC55(2)   gccaaagaattttgagatggtggctgaggaagaggaggatacggcggccggtacgacgccattctcggtgtactttgtgatctgaatcacctaaaccaac  30008900                                                                                              -------                                   <---------LBD16                                           --------                          <---------AHL20(2)                                                <--------                          --------->YAB1                        --------->AHL20(2)         <---------ARR14(2)                          --------->AHL20(2)                    <---------AHL20(2)         --------->ARR14(2)                       --------->YAB1                         <----------DOF2              --------->MYB52(1)                       <---------ICU4                         --------->TOE2(3)           --------->MYB46(3)                      <---------AHL20(2)                   <-----------GT1            ------------>CBF                      --------->AHL20(2)            ---------->ID1                  ------>NtERF2                     <---------AHL20(2)            <-----------GT1                 --------->RAP2.6(2) >MYB83           <---------AHL20(1)  <-----------HVH21<----------DOF2          --------->MYB52(1) >MYB46(1)        --------->AHL20(1) --------->LBD16<-----------GT1        <------NtERF2  <---------ATHB12   taaaacgagtcttcttgatatatattaattatatagctccggtcagactgatttttcctttttactttaatttgggcctcactagcggcccaataaccgc  30009000                       <---------RAP2.6(2)                      --------->RAP2.6(3)                      <---------At5g28300                     <---------ICU4                                                           -------                     <-----------GT1                 <---------At4g35610                     ========   --------->YAB1 <---------ICU4                     --------->At4g35610                     <-------  <---------YAB1 --------->ICU4                 --------->TOE2(3)         XXXXXXXXXXXXXXXXXXX>MIR158A -->ANAC46       <---------YAB1                 --------->YAB1       ------->TEIL  --------->ANAC58 ->MYB46(3)    --------->YAB1                  <<<<<<<<<ARR1      <---------YAB1   --------->ANAC58 -At5g28300   <---------YAB1                   <<<<<<<<<ARR2 <---------MYB52(1)    --------->ANAC46--   tactatcatatgggttctgataattacggcttcaatacaaacaaaaacaatcttaagctcaccgttttatgaatcccaaatatgaacgaaacatgctttg  30009100               --------->TGA1a               <---------O2               --------->O2               <---------ANAC46      <---------ZAT2                         <---------AHL20(2)                                    <-     ------>MYB83                            --------->AHL20(2)         --------->YAB1             --     ------>MYB46(1)                     --------->AHL20(2)  <---------ICU4          <---------ZAT14 -------->AtSPL8   ----------->HVH21    --------->AHL20(1)  --------->ICU4           ---------->DOF2 ========================bZIP_DOF       <---------ARR11(3)  <---------YAB1           --------->ZAT14 ---DOF2       <---------TGA1a <------ZmHOX2a(1) <-----------GT1       <---------ATHB12      -------- ------->MYB46(3)--------->ALFIN1       <---------AHL20(1)--------->YAB1<---------ICU4     --------->MYB52(1)   taccaccaagctcatcgacgtgtgactgtgtgaggaacacaaaatatttattttctacattgataattactcaaacattatgtacagtatagcgaaccga  30009200             --------->ANAC58             --------->ANAC58     <-------GAMYB            ------>MYB83                                      <-------GAMYB    <---------MYB46(3)      <---------MYB59                                <---------AtMYB61    ----------->GT1 --------->ANAC46                                 <---------ARR11(3) <---------ANAC46   --------->ANAC58                         --------->ANAC46  --------->MYB55(2) --------->ALFIN1   --------->ANAC58        --------->TOE1(1)--------->ANAC58  --------->MYB52(2)   - --------ANAC46   <---------ALFIN1  --------->YAB1      <---------ZAT14    <---------YAB1           - ------->ALFIN1  <---------REM1(2) <---------YAB1   <------ZmHOX2a(1)--------->ARR11(3) ----------->GT1 ->DEAR3(2)  --------->ANAC46 ------>MYB46(1)  -------->P    --------->ANAC58  <---------MYB46(3)  --   ggtgtgtggttaaacactcaacacgctggaccaacttatgaaaacctcttaccaggacttcacaagccgaagatgttatggtcgttggcactgaaaatag  30009300                                                        --------->ANAC58                                                      <---------WRKY38(1)                                                      <---------WRKY12                                                      ---------->DOF2                                                     --------->WRKY18(1)                                                    <-----------HVH21                                            ----------------->AG                                           <-----------------AGL1                                           ----------------->AGL1                                   -                                          --------->PCF5--------->ANAC46                            <                                        <---------ATERF1(1)                                     -----          ----------->RAV1(2)           <---------DEAR3(2)                         ------>NtERF2-----     --------->MYB52(1)     ------>NtERF2<---------SPL7 --------->ANAC58     --------->GLK1(2) <----- ------>NtERF2            --------->ATERF1(1)   --------->MYB52(1)          <---------ARR14(2)------- -------->DREB2C(2)       <------NtERF2 <---------MYB46(3)                  <---------GLK1(2)-------- -------->DEAR3(1)       <---------ATERF1(1)----------------->AGL1          --------->ARR14(2)<------ ------->ORA47(2)    --------->ANAC46  <---------DEAR3(1)            <------ZmHOX2a(1)     <---------ALFIN1   caccgccaaactgcctggtgttcaagtcgcctccatcaagggcggtcccaaaacggtcaagccactgggcaggactgggattctctgcctcttccaccca  30009400  Previous    Next  AGI:  At1g79730.1    Description:  ELF7 (EARLY FLOWERING 7). similar to unnamed protein product [Vitis vinifera] (GB:CAO45818.1); contains InterPro domain RNA polymerase II-associated, Paf1 (InterPro:IPR007133) Range:  from: 30005431    to: 30008898    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g79740.1    Description:  hAT dimerisation domain-containing protein. similar to hAT dimerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G17450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69358.1); contains InterPro domain Protein of unknown function DUF659 (InterPro:IPR007021); contains InterPro domain HAT dimerisation; (InterPro:IPR008906) Range:  from: 30009260    to: 30011122    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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