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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                 ----------->GT1
                                                                 <----------ID1
                                          ----------->ARR10  ---------->DOF2
                     ------>ZmHOX2a(2)   <------NtERF2<---------At4g35610
                 --------->WRKY12 --------->MYB52(1)  --------->At4g35610
                 --------->WRKY38(1)   <---------ANAC46  --------->MYB52(1)                       <-
          <-----------RAV1(2) --------->TOE2(3)   <---------ANAC58       ----------->GT1          <-
-------ZAT18  <---------ANAC46<-----------HVH21   <---------ANAC58     --------->MYB52(1)       ----
 
agcccttcgagcatcaggcgttgatccctccatcgtcaaacggcgtagttttggcttagctaacaaaagagaaaaaacgaaaataagtatatagttcgtt  29894900
                                                     --------->CCA1(2)
                                                    --------->ARR11(3)
                                                    <---------ARR11(3)
                                                  ----------->ARR10
    <---------YAB1                                <---------YAB1
 --------->ICU4                           <---------MYB46(3)                        ----------->GT1
--------YAB1                        ---------->ID1<---------TOE2(3)   <---------ANAC46          <---
--------AHL20(2)     --------->MYB52(1)<-----------RAV1(1)<---------STY1(2)        <---------TOE2(3)
----->YAB1         <---------MYB52(2)  ------>ZmHOX2a(1)  --------->STY1(2)----------->GT1 ---------
 
tataattttgatattgttgaaaacaaacgtttgtgttttgtcctgttgttgttaagatactagccagtaaatggtgtttagaaaataatgtaaatgaatt  29895000
                                                  --------->YAB1          --------->YAB1
                                              <---------AHL20(2)          <---------ICU4
        ----------->GT1         --------->ZAT14<-----------GT1           --------->ICU4
------At5g28300          --------->GLK1(2)   --------->AHL20(2) --------->ARR11(3) ---------->DOF2
>AHL20(2)         --------->At4g35610 <----------DOF2<---------TOE1(2) --------->YAB1
 
acagttggaaattgcaaaataagcagagaattttgttcagtctttagatttaatcatatgttcttcagttcttgtaataatctcataaaagtagtttttt  29895100
                                                <---------MYB52(1)
                       <---------MYB52(1)     --------->ANAC58
                   ----------->RAV1(2)        --------->ANAC55(2)      ------>ZmHOX2a(1)           <
                 <---------ALFIN1             --------->ANAC46         <----------DOF2             -
          <-----------GT1  <-------GAMYB      --------->ANAC55(1)     --------->TOE2(3) ----------->GT1
       --------->ARR11(3) <------MYB46(1)     --------->ANAC58<---------YAB1         <------------CBF
       <---------ARR11(3) <------MYB83 ------->MYC3     ------>ZmHOX2a(1)  ---------->ID1      -----
<---------ANAC46<---------ETT(2)       <-------MYC3 <-----------GT1 <---------YAB1 <---------AHL20(2)
 
gttgagtcgatatctacggtccacctgttcggttgatatacacatgtacacgttatttcctgattttgattatcctttgtcgtaatgtaattggtcaaaa  29895200
                                                                <---------ANAC58
                                                                <---------ANAC58
                                                          <---------RVE1(1)
                                                          <---------CCA1(1)
                                                         <---------ARR11(3)
                                                         --------->ARR14(2)
                                                         --------->ARR11(3)
                                                      <---------HSFB2a(2)         <---------MYB52(1)
                                                      --------->HSFB2a(2)        <-----------HVH21
                                                  --------->GLK1(1)              <-----------TGA1
                --------->ICU4                    <---------GLK1(1)             --------->ETT(2)
           ----------->GT1                       <---------ARR14(2)     --------->SPL7
        <---------AtLEC2--------->YAB1           <---------GLK1(2)      <---------TOE1(2)
  <---------AHL20(2) ----------->GT1             --------->ARR14(2)    ------>ZmHOX2a(1)
 --------->AHL20(2)<---------ANAC58        --------->ANAC58    <---------LBD16 <------NtERF2
---------ARR11(3)  <---------ANAC46   <---------AHL20(2) <---------ARR14(2)  <---------DEAR3(1)
-------->ARR11(3)  <---------ANAC58  --------->AHL20(2)--------->LBD16<---------SPL7*TSS<-----------HVH21
----->DOF2 --------->YAB1 --------->ICU4   --------->ANAC58   <-----------GT1<---------MYB46(3)
 
aagatttatttgtatggtaatgacttgtaataatctactatttattaagccagatttccagatattttcgggtcctacggtcgtcgtcagtcgtcaaggc  29895300
                                                               <-----------------AGL1
                                                               <-----------GT1                     -
                              ---------->ID1              <---------ANAC58                        --
               ------->TEIL  <-----------HVH21  --------->AHL20(2)                                <-
      <---------ANAC46      <-----------RAV1(1) <---------AHL20(2) --------->GLK1(2)        <-------
  <-----------HVH21<-----------GT1<----------DOF2         <---------ANAC58             <-----------HVH21
 
taattcgtcgcgagtatgtatatttctctctctgtcgctttcatttttgattttattgttttcgtttcacaatctggaattgactctcactgtcactgtt  29895400
                                          <---------ANAC46                         <---------MYB46(3)
                                       <---------MYB52(1)                          --------->MYB55(2)
                                       <--------P                                 <--------P
         --------->At4g35610          <-------GAMYB                              <---------MYB52(1)
         <---------At4g35610     <---------ARR14(2)                              <-------GAMYB
  <---------ICU4                 <---------MYB52(1)                          =======================
  --------->YAB1              <------NtERF2                                  =======================
 --------->ICU4             --------->ANAC46                        --------->TOE1(3)
 <---------YAB1             <---------DEAR3(1)                      --------->TOE2(3)
-------->YAB1            ----------->HVH21<---------ANAC58        -------->P ------>ZmHOX2a(1)
------->ICU4       <--------P------>NtERF2<---------ANAC58        ------->TEIL<---------LBD16      <
--------YAB1   <-----------RAV1(2)   <---------MYB46(3)      --------->WOX13(1) --------->LBD16  ---
----RAV1(1)----------->HVH21--------->DEAR3(1)       <----------DOF2--------->AtMYB61           <---
 
gatgatgatgacatctcaccaggttgctacgacgccgtttcggttgcttctggtttctttatgtctatcaaccttcgctcctccggttgttcgtctccga  29895500
          --------->ZAT14
        <---------ZAT18
        --------->ZAT14                              <---------WOX13(1)
        <---------ZAT14                              <--------P
      --------------->AtSPL3                 --------->LBD16
      --------------->AtSPL8                 ------>NtERF2
<---------TOE2(2)                           --------->ANAC46
<---------TOE1(3)                           <---------LBD16               ------->TEIL
<---------TOE1(2)                        <---------ARR14(2)          <---------ANAC46
===HOX2a_HOX2a                      <-----------GT1<---------MYB46(3)<---------AtLEC2
====HOX2a_HOX2a                 <----------DOF2   <---------AtMYB61  <---------ANAC58
-----------RAV1(2)       <---------ARR11(3) <---------RAP2.6(2)      <---------ANAC58<---------AHL20(2)
--->ZmHOX2a(2)           --------->ARR11(3)<---------LBD16       <---------ANAC58   --------->AHL20(2)
---ZmHOX2a(2)           <---------GLK1(1)--------->ARR14(2)      <---------ANAC58   <---------AHL20(2)
 
tctcaggttactgtactctcactctcgatatctctcttttttcatttccggcattggttgatttcttcgcttgcatgtacttggtgattaaatggaattg  29895600
                                                                                    <-----------HVH21
                                                                     --------->ANAC58
                                                                     --------->ANAC46   --------->At4g35610
                                                                     --------->ANAC58<---------MYB52(1)
                                                         <----------DOF2            <-----------TGA1
         --------->ICU4                                 ------>ZmHOX2a(2)          <---------ANAC58
<---------ZAT14                                       <---------ARR11(3)           <---------ANAC58
--------->ZAT14        <-----------GT1                --------->ARR11(3)  --------->ICU4<---------At4g35610
 
aagtaaactggcattattctgtatttttaccctactctgcgaattgttgtctgatttgatcttttggattatacgaaatgcttatttcgtcagttcaatt  29895700
                                                                <-----------RAV1(1)
                                                                ==============================RAV
                                                             <---------ICU4
                                                             --------->ATHB51
                                                             -------->HAHB4
                                                            --------->AHL20(2)
                                                            <---------ATHB51
                                                            <---------AHL20(2)
                        <---------MYB52(1)     <---------YAB1<--------ATHB1
                       <----------DOF2       --------->GLK1(1)  <---------ICU4     --------->TOE2(3)
                <---------ARR11(3)     <------ZmHOX2a(1)--------->AHL20(2)        ----------->RAV1(2)
            --------->ANAC55(2)  --------->ARR14(2)   ----------->GT1            -------->P
            <---------ANAC55(2)  <---------ARR14(2)<---------ATHB12     <---------ALFIN1
            --------->YAB1      <------ZmHOX2a(1)--------->WOX13(1)    --------->ZAT14
 
gaaattgattttcttacataatcttcctttagtgaggatttaggactgatatcaatgaagtaaataattgttgctacactctcttacctgaatcaaatgg  29895800
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AGI:  At1g79450.1   
Description:  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein. similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT1G16360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64944.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045)
Range:  from: 29892585    to: 29895038    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g79460.1   
Description:  GA2 (GA REQUIRING 2); ent-kaurene synthase. Identical to Ent-kaurene synthase B, chloroplast precursor (GA2) [Arabidopsis Thaliana] (GB:Q9SAK2;GB:O64952;GB:Q67ZQ6); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G61120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64942.1); similar to ent-kaurene synthase [Cucumis sativus] (GB:BAB19275.1); similar to ent-kaurene synthase No1 [Lactuca sativa] (GB:BAB12441.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005
Range:  from: 29895285    to: 29899480    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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