Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  ----------->HVH21                            ----------->HVH21                                                  <-----                           --------->SPL7                                                      <-----                         <---------SPL7                                <---------AtLEC2        <-----                       --------->LBD16                          --------->ARR11(3)         <---------ANAC58                       ------>ZmHOX2a(1)                        <---------ARR11(3)         <---------ANAC58                     ----------->RAV1(2)                        --------->ARR14(2)         <---------ANAC46                    ------>ZmHOX2a(1)                    ---------->DOF2           ================== --->HSFB2a(2)<---------HSFB2a(1)           <---------STY1(2)   <---------ARR14(2) <----------DOF2 ----HSFB2a(2)--------->HSFB2a(1)           --------->STY1(2)   --------->GLK1(2)  ------>ZmHOX2a(1)   caagggttcgactggaccattcctcctggtacgacggacagagtcgagctagtcgagtcaaaagaaaatctgttcatggctaatcctttgatggcttgtg  29865000                                                                        <---------ALFIN1                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                       <------NtERF2                                                                      ----------->RAV1(1)                                                                      ------>NtERF2                            --------->LBD16                        ------->GAMYB                           --------->ANAC58                        <-----------TGA1                           --------->ANAC46                       --------->ANAC46                           --------->ANAC58                      --------->RAP2.6(3)                        ------->TEIL                            --------->MYB52(1)                    --------------->AtSPL8               --------->MYB52(1) ----ANAC46       <---------ATHB12                    --------->YAB1 --------->PCF2 ----ANAC58  <------ZmHOX2a(2)                 --------->ZAT2   <---------DOF5.7(2) ----ANAC58 --------->AGP1<---------HSFB2a(2)  <---------ZAT2  <---------WRKY12 ===================HOX2a_HOX2a            --------->WRKY18(1) <---------WRKY38(1)   <---------YAB1 -   tgaagcccagattagatccaaacatgtacccgaaactctggaccggtccagcttgatcataccggttaacggcaccacatttcaattgctattgtcatgt  29865100                                                                             <---------ZAT2                                  --------->DAG2                             --------->ZAT2                                 ---------->DOF2                           --------->ATERF1(1)                               <------ZmHOX2a(1)                    ---------->DOF2                <-                         <---------ANAC58                       --------->YAB1                    ---              ---------->DOF2<---------TOE2(3)               --------->TOE2(3)                 <----- ---------->GT1          <---------ANAC58    <------ZmHOX2a(1) <-------TEIL<---------ALFIN1   <------   atgagtaaaatttgaataaagtttttgtcttgaggaaaagttgaagaggaatatagcccataacgttcataaaaggcccagcccagtattgttctgccgt  29865200                              --------->CCA1(2)                              --------->MYB52(1)                             --------->ARR11(1)         ---------->DOF2 ---------->DOF2  --------->ZAT18                                      <----- --------AHL20(2)     --------->ANAC58 <---------ANAC58                                      -------- ------>AHL20(2)      --------->ANAC58 <---------ANAC46    <-----------GT1                   -------- ----RAP2.6(3)  --------->At4g35610    <---------ANAC58   --------->AHL20(2)                 <------- ---ANAC46      <---------At4g35610 <--------P    ----------->GT1       <---------TOE2(3)    <-------   tttaatttgagcaaagtaagcttcaagtaaagaaacgggttgagtgcaaaaatggagaaattaacttgcaagttgagattagcacataagaagagtatct  29865300                                                                                  --------->AHL20(1)                                                                                  <---------AHL20(1)                                              <-----------TBP       ------>ZmHOX2a(2)                                          ================================HOX2a_HOX2a                                          ------>ZmHOX2a(1)        <------ZmHOX2a(2)                                          =================================HOX2a_HOX2a                                      <---------ARR11(3)          <---------ARR11(3)           <-----                                      --------->ARR11(3)          --------->ARR11(3)          <------                                     -------->HAHB4               <---------ARR14(3)          <------                                     --------->YAB1               --------->ARR14(2)          ------- ----MYB59                         <---------TOE2(3)              --------->AGP1  <---------AHL20(2) ->GLK1(2)                        --------->YAB1       <---------CCA1(2)<---------ANAC46  --------->AHL20(2) ->ARR14(2)                      --------->ICU4 <---------AHL20(2)--------->ARR14(3)  ----------->GT1 --ARR14(2)             <----------DOF2 ------>ZmHOX2a(2)       ----------->ARR10 --------->ARR11(3) ----ARR10    ---------->DOF2  --------->TOE2(3)--------->AHL20(2)<---------ARR14(2)*TSS  <---------AHL20(2)   aattccatcttgttcacaaagtcattcttttagcattaatgatcctatatttatatcaaatctcataagatcttcagtgtataatatatagtttaatttt  29865400                                                               <-----------HVH21                                                              --------->bZIP60(2)         <---------ANAC58     ----------->GT1                 --------->O2         <---------ANAC58   <-------TEIL                     ------>NtERF2  <---------TOE1(2)  <---------TGA1a                         <------NtERF2 ----AHL20(2)        --------->O2                   <---------ALFIN1 ---AHL20(2)         <---------O2   --------->AHL20(2)----------->RAV1(2)                       ----- ---AHL20(1)         --------->TGA1a<---------AHL20(2)--------->ZAT2 --------->YAB1            <----- -->AHL20(2)         <-----------RAV1(1)         <-----------------AGL1                      <-------   tttctaggttttcgttcgaactcatgtgggttcagtaaataaatgtttaagtccccatctggccgcgtcaaaaatacttagataacaacaattagtggtt  29865500                         --------->REM1(2)                        <---------ANAC46                       ------>NtERF2                <-----------RAV1(1)                <---------MYB46(3)               <---------WOX13(1)               <---------YAB1                    ---------->DOF2             --------->YAB1                   --------->AHL20(2)             --------->ATHB12                 --------->YAB1             -------->HAHB4               --------->AHL20(2)                     <---------RAP2.6(2)            <---------YAB1                <---------AHL20(2)                     <---------ANAC58            <---------ATHB12             --------->AHL20(2)       <---------ATHB12 <------NtERF2      --------->DAG2   --------->LBD16   <---------AHL20(1)       --------->ICU4 <---------ANAC46     ---------->DOF2  <---------ANAC46   <---------AHL20(2)  --------->ANAC58    <---------ANAC58 ------>HVH21<--------ATHB1          --------->AHL20(2)      --------->ANAC58   ---------->ID1 ----WOX13(1)<---------ICU4          <---------AHL20(2)    ---------->DOF2  <---------ANAC58 --MYB46(3) --------->ICU4          --------->AHL20(2)     --------->ZAT14  <---------ANAC58   gacatagaaaagtaatgattgttgccgcgtagaatgaaattaataaaattataaagaacagtgaagcaataaatgtttccttggcgtcttgaagagtagt  29865600                                                                                           >>>>>>>>>TBF1                                                                                        >>>>>>>>>TBF1                                                           <---------ARR11(3)        >>>>>>>>>TBF1  -                                                           --------->GLK1(2)      -------------------                              --------->GLK1(2)           --------->RVE1(1)     ---------------------                             <---------GLK1(2)          --------->AHL20(2)     >>>>>>>>>TBF1  -------      <---------ICU4     ---------->DOF2          ----------->GT1--------->GLK1(1)>>>>>>>>>TBF1     <   cttcttaaatattccagcccaaaaaaaaaaagattctatccattatcaagagaagaaaaaaaatctgaattccaattcgaagaagaagaagaagaagaaa  29865700                                                                              <-----------HVH21                                                                             <---------O2 -------->At4g35610                                                          <---------bZIP60(1) ----->ANAC81                             --------->DAG2                     --------->O2 --->ANAC81                 --------->CCA1(2)  --------->At4g35610           --------->bZIP60(1) --->DOF2         --------->TOE2(3)      ---------->DOF2                 --------->SPL7          ---- ---------At4g35610  ---------->DOF2----------->GT1                <---------LBD16              -----   ggagatgactatggggaatttcttaaagagatttggaagtggaaaaagcagaagcagtagaaatatgactctgggaacgacgtcgtctcaatctcatgaa  29865800                                                      <---------------AtSPL3                                             ------>NtERF2              ------>ZmHOX2a(1)             --------->DEAR3(1)            ------>ZmHOX2a(2)             <-----------TGA1              <---------WRKY18(1)           <------ZmHOX2a(2)              ------->GAMYB                ----------->HVH21          --------->ARR14(2)             --------->ANAC58  --------->ANAC58          <---------ARR14(2)             --------->ANAC58  --------->ANAC58     <-----------HVH21                   --------->ANAC46 --------->ZAT18    --------->DEAR3(1)                  ------>MYB83  <---------------AtSPL8 <---------ALFIN1                       ------>MYB46(1)   --------->ZAT14                       <---- ----->MYB46(3)                       --------->AtMYB61   <---------ZAT18                ----------->HVH21 -->TEIL<---------DEAR3(2)       --------->YAB1       --------------->AtSPL3  <----------DOF2<-------   ccatcaccgtcggatccttcactctcccttgccgataataccaacgccaccaagaagaagtacgctctcatccctgaccgcttctcttccctcgaccagg  29865900  Previous    Next  AGI:  At1g79370.1    Description:  CYP79C1 (cytochrome P450, family 79, subfamily C, polypeptide 1); oxygen binding. similar to CYP79C2 (cytochrome P450, family 79, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G58260.1); similar to Cytochrome P450 79A1 (Tyrosine N-monooxygenase) (Cytochrome P450Tyr) (GB:Q43135); contains InterPro domain Cytochrome P450, E-class, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) Range:  from: 29862827    to: 29865056    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g79380.1    Description:  copine-related. similar to RGLG2 (RING DOMAIN LIGASE2) [Arabidopsis thaliana] (TAIR:AT5G14420.3); similar to RGLG2 (RING DOMAIN LIGASE2) [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to RGLG2 (RING DOMAIN LIGASE2) [Arabidopsis thaliana] (TAIR:AT5G14420.4); similar to Os08g0135400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060941.1); similar to hypothetical protein OsJ_024918 [Oryza sativa (japonica cultivar-group)] (GB:EAZ41435.1); similar to hypothetical protein OsI_026739 [Oryza sativa (indica cultivar-group)] (GB:EAZ05507.1); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Range:  from: 29865384    to: 29868209    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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