Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------GLK1(2)                                                --------->YAB1  <---------MYB46(3)                                         --------->At4g35610   <--------P                    <-------                                         <---------At4g35610  <-------GAMYB          <---------TOE2(3)                                      <---------At4g35610   <---------TOE2(3)    <----------DOF2 ----------DOF2--------->HSFB2a(2)   <-----------GT1--------->GLK1(2)---------->DOF2 <---------TOE1(3) --ANAC46      <---------HSFB2a(2) <---------AHL20(2)       <---------TOE1(3)<------ZmHOX2a(1)   aactttgtctgcgtcttccagcaaaatgtctcgacaatttatctgctcaaacagaatcgattagggttgttcaaagtaaggacctttaagggtttttgat  29688500                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                                <---------RVE1(1)                                               --------->AGP1                                               <---------ARR11(3)                                               --------->ARR11(3)                                              --------->GLK1(1)                                         ---------->DOF2                --------->HSFB2a(2)   --------->CCA1(2)                --------->LBD16     ====================HOX2a_HOX2a                   <---------ANAC46               <---------ANAC46     <------ZmHOX2a(1) <---------At4g35610             <---------ANAC58               <---------LBD16      ===================HOX2a_HOX2a                    <---------ANAC58              <---------LBD16      ----------->GT1<----------DOF2                <-----------RAV1(1)           <----------DOF2    --------->ALFIN1<---------GLK1(1)                <-------GAMYB --YAB1  <---------------AGL15<---------------------WRI1                      <-----------RAV1(1)   tcagagaatacctctttacgggaacaatagcagtggaaggatacaaagagatctttagctatcttctccatttgctgtttctgttgtggcgttccttctt  29688600                  --------------->AGL15                  <---------------AGL15             ------->GAMYB            --------->ANAC46            --------->ANAC58            --------->ANAC58         --------->MYB46(3)       ----------->RAV1(1)   ------>ZmHOX2a(2)  <------ZmHOX2a(2)  --------->CCA1(2) --------->ARR11(3)                 <----------DOF2 --------->AGP1  ----------------->AGL2 <---------ARR14(3)                 <---------DAG2 <---------ARR14(2)            <XXXXXXXXXXXXXXXXXXXXXMIR830*                ------->TEIL        ----- <---------AGP1  ----------------->AGL3   --------->HSFB2a(2)            <---------ATHB12       <---- --------->ARR14(3)        --------->ARR11(3)           ---------->DOF2  <---------YAB1  <---------ARR14(2) --------->ARR14(2)        <---------ARR11(3) ----------->ARR10   --------->KAN4(2)      --------->ARR14(2) <---------ARR11(3)    ---------->DOF2    <---------HSFB2a(2)    <---------GLK1(1)      --------->ATHB12   caagatctgcaacaacgaaaccaaaaaaagaacttaaactttatcgagaagaaactctaaaagctggaaattcccatgaatgtgagaagaagattgggac  29688700                      <------ZmHOX2a(1)                   --------->At4g35610                   <---------At4g35610              ------>ZmHOX2a(2)              ===============HOX2a_HOX2a             --------->At4g35610             --------->CCA1(2)             <------ZmHOX2a(2)             ================HOX2a_HOX2a            <---------ARR14(2)            --------->ARR11(3)            --------->ARR14(2)            <---------ARR11(3)            --------->ARR14(3)            --------->AGP1           <---------GLK1(1)                                 <---------GLK1(2)          ----------->ARR10                            --------->ANAC58   >>>>>>>>>TBF1--------->At4g35610                    --------->ANAC58                          <--- ---->At4g35610 --------->ZAT14                   --------->O2                              <-------- -----At4g35610 <---------ZAT14                   <---------O2                              <--------   ctgaagaagaatgagatctgcagaggacatgaataagagaaatggtttggccacgagaagcaagattgtcgattgtccatttaagagcatgttggcttcc  29688800                                                                                                    -                                                                                                    <                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                              -------                                                            <----------DOF2                   <------                                                       *TSS<---------ANAC58                  <-------   <----------DOF2           <---------ALFIN1     ---------->ID1                           <--------- -------DOF2                --------->MYB46(3)<----------DOF2                              <---------AHL20(2) -ANAC58         <------------AtMYB77     <----------DOF2  <---------ANAC58              <-----------TBP -ANAC58        <---------At4g35610 ------>ZmHOX2a(1)<---------ALFIN1    <---------GLK1(2) --------->AHL20(2)   tttgtctttgtctattgcaactgctactgaaccacttcctgtttctttctttgccccatttgcttttggtagccacattctcttcttctctatatatata  29688900     <------------CBF    --------->ATHB12    --------->ATHB51   <---------YAB1 --------->YAB1 <---------ICU4 -------->ICU4 ---------YAB1 ------AHL20(2) ----->AHL20(2) ------YAB1 -->AHL20(1)               --------->ARR11(3)              ---------->DOF2 ---AHL20(1)               <---------ARR11(3)       <---------YAB1 --AHL20(2)           ---------->DOF2            --------->ICU4               --------->ATHB12 --TBP       ---------->DOF2                    <----------DOF2            <----------DOF2  ---------   ttattattattgaacaaaaggaagaaaagtatctcttccctctcttgagtctttatgatgcaaaagagaaaacttcactttgatttgacaaaaaaaaaat  29689000                               --------->ANAC58                               --------->ANAC58                    <---------------AGL15                                                  --------->MYB111(2)                    <----------DOF2                                                        --------->MYB55(2)                --------->ARR11(3)                                                         <---------MYB46(3)                <---------ARR11(3)                                                        <--------P      <---------WOX13(1)     <------ZmHOX2a(1)                   <------MYB83 <---------DAG2<-------GAMYB    --------->ATHB12--------------->AGL15                        <------MYB46(1)        <---------MYB46(3)   <---------YAB1--------->GLK1(2)                             <--------P   ------>ZmHOX2a(1)       < >AHL20(2)      <---------GLK1(2)                <-------TEIL <---------ANAC46<----------DOF2       <   agagtttgattgatcaaagattctttatggaggaagcaaatgaagtagagatgcaagattaatgggttggagaatttcctctttttctaatggttgttgt  29689100                                                                                            <--------                                                                                       <-----------GT1                                   --------->GLK1(2)                            <---------AtMYB61               <---------At4g35610<---------GLK1(2)---------->DOF2            <-----------RAV1(1)         <---------YAB1           --------->ARR14(2)                          <---------ANAC58 ---------TOE1(3)                 <---------ARR14(2)   --------->ARR11(3)     <---------ANAC58 ---------TOE2(3)     --------->GLK1(2)    --------->ZAT6---------->DOF2      <---------ANAC46   ttaagggttttatttttggctgataatctaatttcagattctataacacaaaaaaaagataaagaaacaataacacatttgtgtggttttgactcttttg  29689200                                                                                    --------->ARR14(2)                                                                                    <---------ARR14(2)                                                                                    <---------ARR11(3)                                                                                    ------->TEIL                                                                                   <---------CCA1(2)                                                                             <---------CCA1(2)                                                                            ------->TEIL                                                                         --------->ANAC58                                                                         --------->ANAC55(1)                                                                         --------->ANAC58                                           --------->MYB46(3)            --------->ANAC46                                   --------->DAG2                        <---------ANAC55(2)            --------->DAG2        ---------->DOF2                        --------->ANAC55(2) --DOF2----------->GT1  --------->YAB1----------->GT1  <---------ZAT6 <------ZmHOX2a(2)   ttcaacatgttgaaaaattggaagaaacataaaaaaaaaagtgtaacaaatggcctagtctaaatttagacgatcacgcatctctgtatcttcaccatgt  29689300                           ---------->DOF2                        --------->ANAC46                      --------->ANAC58                                                              -                      --------->ANAC58                                                              -                     <---------ZAT14                                                                <                     --------->ZAT14                                                                <                     <-------TEIL                                                            <------MYB46(1)                  <---------DEAR3(2)                                         <---------YAB1  --------                 --------------->AtSPL8                            --------->ANAC58          <------MYB83                <---------ORA47(1)                                 --------->ANAC58      --------->ATHB12                <---------------------WRI1                         --------->ANAC46     <---------YAB1   gaaacatgccttccaatggacggtacacaaaaagaaaacattgactaaaaacattgacatatcgcatacacgaattcttgtaatagactgatgataggtt  29689400  Previous    Next  AGI:  At1g78940.1    Description:  protein kinase family protein. similar to kinase [Arabidopsis thaliana] (TAIR:AT2G24370.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16760.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20200.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69465.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41708.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43975.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kina Range:  from: 29685750    to: 29688855    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g78950.1    Description:  beta-amyrin synthase, putative. similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to ATLUP2 (Arabidopsis thaliana lupeol synthase 2), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78960.1); similar to CAMS1 (CAMELLIOL C SYNTHASE 1), beta-amyrin synthase [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to beta-amyrin synthase [Medicago truncatula] (GB:CAD23247.1); similar to beta amyrin synthase [Bruguiera gymnorhiza] (GB:BAF80443.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha to Range:  from: 29689325    to: 29693566    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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