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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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             --------->HSFB2a(2)
             <---------HSFB2a(2)
      --------->ATERF1(1)
      <------NtERF2
     <---------ORA47(2)
     <---------DEAR4(2)
     <---------RAP2.3(1)
     <---------ATERF1(1)
     <---------ERF1
     ------>NtERF2
    <---------ANAC46
    --------->ATERF1(2)
    --------->DEAR3(1)
    <---------RAP2.3(3)
    <---------RAP2.3(2)
    <---------DEAR3(1)
    <---------ATERF1(2)
   <------NtERF2
   --------->ATERF1(1)
   --------->RAP2.3(1)
   ------>NtERF2
   <---------ABI4(1)
  <---------ATERF1(1)                                                            --------->At4g35610
  <---------DEAR4(2)     --------->ARR14(2)                                      <---------At4g35610
  <---------RAP2.3(1)    <---------ARR14(2)                                      --------->ZAT2
 <---------DEAR3(1)  ------>NtERF2                                             <---------ALFIN1    <
<---------LBD16     --------->ZAT18            ------->TEIL                    <-----------RAV1(2) <
------->DOF2----------------->AGL1           <---------ZAT14      --------->AHL20(2)              --
----->ARR14(2)    --------->At4g35610---------->DOF2              <---------AHL20(1)              --
------ARR14(2) ---------->DOF2<---------MYB52(1)                  <---------AHL20(2)          <-----
>ANAC46   <------ZmHOX2a(2)  ----------->GT1 --------->ZAT14      --------->AHL20(1)  <---------GLK1(1)
>ANAC58  --------->ARR14(2)  --------->LBD16----------->HVH21    --------->AHL20(2)   --------->GLK1(1)
>ANAC58  <---------ARR14(2)<---------LBD16 --------->At5g28300   <---------ATHB12<---------ZAT2 <---
>AtLEC2 --------->GLK1(1)--------->GLK1(2)<XXXXXXXXXXXXXXXXXXXXMIR398A       ----------->RAV1(1)<---
 
aaacgcggcggcgatcccagaagcggacaatccggtaacaagaagcggtgaaccgagaacaaaaatcaataaattgttagccacagctgatttccaagtt  29580400
                                                                 <---------ABI4(2)
                                                              <---------SPL7
                                                             --------->DEAR3(1)
                                                            --------->RAP2.3(1)
                                                            <------NtERF2
                                                           --------->ABI4(1)
                                                           <---------ATERF1(1)
                                                           ------>NtERF2
                                                          --------->RAP2.3(2)
                                                          --------->RRTF1(2)
                                                          --------->DREB2C(2)
                                                          --------->ATERF1(2)
                                                          --------->DEAR3(1)
                                                          --------->RAP2.6(2)
                                                          <---------DEAR3(1)
                                                          --------->RRTF1(3)
                                                          --------->RAP2.3(3)
                                                         --------->RAP2.6(1)
                                                         --------->DEAR4(2)
                                                         --------->RRTF1(1)
                                                         <------NtERF2
                                                         --------->ERF1
                                                         --------->ATERF1(1)
                                                         --------->RAP2.3(1)
                                                        --------->At4g35610
                                                        <---------RAP2.3(1)
                                                        <---------DREB2C(1)
                                                        <---------ATERF1(1)
                                                        ------>NtERF2
                                                        --------->DREB2C(1)
                                                        <---------DEAR4(2)
                                                       --------->RAP2.3(3)
                                                       ------->GAMYB
                                                       --------->ANAC46
                                                       <---------ATERF1(2)
                                                       --------->RAP2.6(2)
                                                       --------->RAP2.3(2)
                                                       --------->ATERF1(2)
                                                       --------->DEAR3(1)
                                                      --------->ERF1                 --------->LBD16
                                                      --------->RRTF1(1)            <---------HSFB2a(2)
   <------NtERF2                                      --------->MYB46(3)            --------->HSFB2a(2)
  ------>NtERF2                                       --------->ATERF1(1) <------NtERF2
 <---------bZIP60(1)                                  --------->DEAR3(2)  --------->At4g35610
 <---------ANAC46                                     --------->RAP2.6(1)<---------DEAR3(2)
--------->ATERF1(1)                                   --------->RAP2.3(1)------>NtERF2------>NtERF2<
---------ATERF1(1)           <-----------HVH21       <---------ZAT2    <---------MYB52(1)          <
---------TGA2(2)             <-----------TGA1        --------->ZAT2   <-----------HVH21 --------->ANAC58
--------->TGA1              --------->ANAC46         <---------ATERF1(1) <---------RAP2.3(1)       <
--------->HVH21           ------>NtERF2              --------->At4g35610<---------DEAR3(1)----------
---P                      <---------ATERF1(1)        <---------At4g35610<---------RAP2.3(3) --------
---MYB46(1)              --------->DEAR3(1)          ------>NtERF2   --------->DEAR3(1) --------->ANAC58
---MYB83          <-------TEIL          ------>ZmHOX2a(1)--------->ORA47(2) <----------DOF2 --------
 
ggtgacgccgattgaatcagtttcatcgcctccgtcatcactccttccatcgatgcagccgccgccgtagcaccgtcggctctacttcccgacgaaagca  29580500
                                           ======================HOX2a_HOX2a
                                           ------>ZmHOX2a(2)
                                          <------ZmHOX2a(2)
                                          --------->CCA1(2)
                      <---------ANAC58    =======================HOX2a_HOX2a
            <---------ARR14(2)           --------->AGP1
 <---------MYB52(1)   <---------ANAC55(2)<---------ARR14(2)
<-------GAMYB         --------->ANAC55(2)<---------AGP1                  --------->LBD16
---------ANAC58 --------->LBD16 --------->ARR14(2)                      --------->LBD16
---------ANAC58<---------HSFB2a(2)       --------->ARR14(2)         --------->ARR14(2)            --
---------ANAC46--------->HSFB2a(2)       <---------ARR11(3)         <---------ARR14(2)       <------
>DOF2---------->DOF2  <---------ANAC58   --------->ARR11(3)    ----------->GT1          --------->TOE2(3)
->ANAC58  <---------MYB46(3)    --------->GLK1(2)             >>>>>>>>>TBF1           --------->GLK1(2)
->ANAC58 --------->ALFIN1       <---------ARR14(2)        <------ZmHOX2a(1)  --------->GLK1(2)   ---
 
ttccgttggaaagtggttccagattacgtcgtccaaatctgtaagatctagcgaatggagaggaagaagaaaatcccgagaattttgggaatcttagtgg  29580600
       <---------HSFC1(1)
       --------->HSFB2a(2)
      ------>ZmHOX2a(2)                                        --------->LBD16         ----------->GT1
    --------->ARR11(3)                                    <---------ANAC58            *TSS
<---------At4g35610                                       <---------ANAC58        ------>ZmHOX2a(1)
------->DAG2                                          <---------ANAC58   <----------DOF2
---ZAT6<---------HSFB2a(2)   --------->WRKY12         <---------ANAC58<---------ARR11(3)
------->DOF2              <---------ZAT6             --------->ZAT2   --------->ARR11(3)
 
taaagctgatctagaagaatttaagagtagagttgacgaaatcgttgccatgacttagcttgcttccgaagaagacctttctctcctattgagaaaaaaa  29580700
                                                  --------->ANAC55(2)
                      --------->At4g35610         <---------ANAC55(2)
                      <---------ZAT2        ------>ZmHOX2a(1)
                      --------->ZAT2       --------->TOE1(3)
                      <---------At4g35610  --------->TOE2(3)
                   --------->LBD16       <------ZmHOX2a(2)
                 <---------LBD16        <---------ARR11(3)
               <---------ARR14(2)       --------->ARR14(2)
               --------->ARR14(2)     --------->LBD16  <---------ANAC46                    <--------
           <--------P <---------GLK1(1) <---------ARR14(2)                                <---------
       <---------ANAC46              --------->ANAC46--------->REM1(2)                --------->AHL20(2)
       <---------ANAC58             <---------LBD16--------->LBD16                  <---------GLK1(2)
       <---------ANAC58    --------->LBD16------>ZmHOX2a(2)  <---------AHL20(2) <---------At4g35610
      <---------LBD16 --------->GLK1(1) <---------GLK1(2)<---------ANAC46     --------->YAB1   -----
 
aaacagtatttcgggttgaatccggagctccgaaaaaaacccggatccttaacccgtgttgtgtttatttttcggtcgtattcatcagattatttacggt  29580800
                                                                                                   <
                                                                                               <----
                                                                                              ------
                                                                                            --------
                                                                                            <-------
                                                                                            <-------
                                                                                           <-------GAMYB
                                                                                          <---------MYB46(3)
                                                                                          <---------DEAR3(2)
                                    --------->LBD16                                      <---------DEAR3(1)
                                    --------->HSFB2a(2)                                  <---------DREB2C(2)
                                    <---------HSFB2a(2)                                  <---------ANAC58
                             --------->TOE2(3)                     <---------At4g35610   <---------RAP2.6(2)
 --------->ZAT6              --------->YAB1        --------->At4g35610 ----------->GT1   <---------ANAC46
-At5g28300              ------------>CBF        *TSS  --------->At4g35610----------->GT1 <---------ANAC58
--GT1                  --------->ANAC58       ---------->DOF2    <---------HSFB2a(2)    ------------
---->ALFIN1            --------->ANAC58 <---------GLK1(1)        --------->HSFB2a(2)<---------ICU4 <
 
gttgccactactactatttactgagaacccaatcttatccgagaaatcggaaagagcagaagaaatttgcagaagagagaaaaacaaaaatggcggttct  29580900
                                             --------->LBD16
                                            --------->ANAC46
                                            <---------HSFB2a(2)
                                            --------->HSFB2a(2)
                                           <---------LBD16
       ----------->HVH21             --------->GLK1(1)
---------ANAC58                      <---------GLK1(1)
------DOF2                       --------->LBD16                                             <------
--->MYB52(2)                    <---------ANAC55(1)                                --------->MYB52(1)
->ARR14(2)  --------->At5g28300 <---------ANAC58                                <----------DOF2
--ARR14(2) ----------->GT1      <---------ANAC58                        <---------TOE1(3)    -------
----ARR10 <---------DEAR3(1)    <---------ANAC46                   <----------DOF2 <---------DOF5.7(2)
----------->TaNAC69(2)          <---------ANAC55(2)     ---------->DOF2 <---------TOE2(3)--------->GLK1(1)
---------ANAC58            <<<<<<<<<TBF1  ------>ZmHOX2a(1)       <---------MYB52(1)--------->RAP2.6(3)
 
ttgctcgtcttcgacggtgatactctcttcttcttccgtgaaatcctccggaagtgagagaaagtctccgtttttagggttctctttaacggctatctcg  29581000
                                                                        --------->DEAR3(1)
                                                                      ------>NtERF2
                                                                    <------NtERF2
                                                                    --------->SPL7
                                                                    --------->ATERF1(1)
                                                                   <---------ATERF1(1)
                                                                  --------->DEAR3(1)
                                                                  --------->RAP2.3(3)
       --------->SPL7                                             ----------->HVH21
     <---------SPL7                                              --------->ATERF1(1)
    <---------DEAR3(2)                                           --------->DEAR3(2)
   <---------DEAR3(1)                                      <---------At4g35610
  <---------MYB52(1)                                       --------->ZAT2   ------>NtERF2
  <------NtERF2  <----------DOF2                           <---------ZAT2------>NtERF2
 ------------------>SPL14                            --------->ALFIN1--------->DEAR3(1)            -
 <-----------HVH21         <---------ARR14(2)      <---------ANAC46------>NtERF2           ---------
--------->DEAR3(1)         --------->ARR14(2)    --------->ZAT14<---------At4g35610        ------>NtERF2
---HSFB2a(2)   <------NtERF2           <------ZmHOX2a(1)   --------->At4g35610            <---------ANAC46
-->HSFB2a(2)--------->RAP2.6(3)  ---------->DOF2 <---------ZAT14--------->At4g35610      <---------LBD16
 
aagccgtcggtacgagtcggcatttatgcgaattcgaaaagaggattgcaagtgaagtgtgaagctgagccgacgacgacgacttctcttgttccggcga  29581100
                                                                                            <-------
                                                                                           <--------
                                                                                        --------->DAG2
                                                                                       ---------->DOF2
                                                                                    --------->YAB1
                                          --------->TOE2(3)                   --------->ANAC46     <
                                          --------->YAB1                      --------->ANAC58     <
-------->MYB52(1)           --------->MYB52(1)    <-----------GT1             --------->ANAC58  <---
>LBD16 ------->TEIL >>>>>>>>>TBF1        ----------->GT1                 <-----------ARR10 ---------
 
atcaacgatggatgttcgacgaagaagaagctaatggccctgtaacgataatttttctatctccctctgtgtttagcatctacgcatttataaagtgtcg  29581200
    --------->ARR11(3)
   <---------At4g35610                                                                          ----
----HVH21  <----------DOF2                                                            --------->ATHB12
---RAV1(1)<---------ANAC58                                                       --------->WRKY12
---------DAG2                         <-----------GT1                            --------->WRKY38(1)
----------DOF2               <---------ANAC46                          --------->ARR14(2)  <--------
------ALFIN1                 <---------ANAC58                          <---------ARR14(2)  ---------
>ALFIN1   <---------ANAC58   <---------ANAC58            --------->AHL20(2)    <----------DOF2 -----
 
cactttagctcttgctttgaatttgaagtatggcttgtttttttcttctcccaattgcgatttattaagtagtggattttgcctttgactcattagctgt  29581300
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AGI:  At1g78620.1   
Description:  integral membrane family protein. similar to unknown [Picea sitchensis] (GB:ABK22124.1); similar to Os01g0729100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044132.1); contains InterPro domain Protein of unknown function DUF92, transmembrane (InterPro:IPR002794)
Range:  from: 29577764    to: 29580687    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g78630.1   
Description:  EMB1473 (EMBRYO DEFECTIVE 1473); structural constituent of ribosome. Identical to 50S ribosomal protein L13, chloroplast precursor (RPL13) [Arabidopsis Thaliana] (GB:Q9SYL9); similar to ribosomal protein L13 family protein [Arabidopsis thaliana] (TAIR:AT3G01790.2); similar to ribosomal protein L13 family protein [Arabidopsis thaliana] (TAIR:AT3G01790.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96526.1); contains InterPro domain Ribosomal protein L13, bacterial-type; (InterPro:IPR005823); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822)
Range:  from: 29580849    to: 29582551    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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