Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <-----------GT1                               --------->YAB1                       ------>ZmHOX2a(1)      <----------DOF2                      --------->TOE1(3)       <---------DAG2                      --------->TOE2(3)    <<<<<<<ZML2                  <---------ANAC58      ------>ZmHOX2a(1)                  <---------ANAC58<---------ICU4                 --------->HSFC1(2)     <---------HSFB2a(2)     ----------->RAV1(1)    <---------ICU4 <---------ARR11(3) ------ARR11(3)  <---------HSFC1(2)     <---------HSFC1(1)        ---------->DOF2           <-------- ----->ARR11(3)  --------->HSFB2a(1)    --------->HSFC1(1)     --------->MYB52(1)      <---------DOF5.7(2) --->ANAC58      <---------HSFB2a(1)    --------->HSFB2a(2)  <---------MYB52(2)  ---------->DOF2 --->ANAC58   <---------At4g35610<---------YAB1       <---------AtLEC2         --------->ANAC46  <---   aactagccaacatttgagatgcttccttaagaattatcattcctagaactttatttgcatagaactaacaaagaatgctccacaaaagtaaacgctttag  29236000                         --------->WOX13(1)                 --------->ARR11(3)                                         --------->ARR11(3)                 <---------ARR11(3)                           <----------DOF2 --------->GLK1(2)<---------YAB1      --------->ETT(2)     --------->ARR11(3)       <----------DOF2 --DOF2      <---------YAB1           <---------ETT(2)     <---------ARR11(3)    ---------->ID1 ---ZmHOX2a(1)--------->YAB1  --------->YAB1          --------->TOE2(3)     <---------ARR11(3)   gagaatcgtttgactataatatcatggcaatctcataatgtagacattgaactatacattagacctttcgatttcaaagatttgttctttcttctacata  29236100                                                                                                  <--                                                                                               ------                                                                                               ------                                                             --------->LBD16                 <-------                                                            --------->ANAC46           <---------RVE1(1)                                                            --------->LBD16           <---------GLK1(2)                                                           <---------LBD16            --------->ARR11(3)                   --------->ANAC58                       ------->GAMYB               <---------ARR11(3)                   --------->ANAC58                     -------->P            ---------->DOF2--------                   <----------ID1                     --------->MYB46(3)  --------->MYB52(1)<--------            ----------->GT1                    <----------DOF2  --------->GLK1(1)    <---------RVE1(1)   gcactgttgaaaatgggtaagaagccaaaatcacagagcaataagacgactttgaaacaaccccggaaatactacataccgaaagagagatttttaggtg  29236200                                                                                              -------                                                                                              <------                                                                                          --------->ZAT14                                                                                          <---------ZAT14                                                                                         ----------->HVH21                                                                                        <----------CDC5                                                                                        <------NtERF2 -------YAB1                                                                           --------->At4g35610 ----->TGA1                                                                            <---------At4g35610 ----->HVH21                                                        ----------->GT1   <---------ANAC46 --At4g35610                             ------->TEIL               --------->YAB1    <---------DEAR3(1) ->ANAC55(2)                        --------->At4g35610       --------->TOE1(3)    --------->ALFIN1 -TOE2(3)                           --------->CCA1(2)         --------->TOE2(3)  <-----------RAV1(1)   acgatagatttgaatttgatgaaatctaataccaagagagatgaatcgattcgatctattgaaaccctaatcgtaaaacccaaatgtggcgctgaagtgt  29236300                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                                              --------->ARR14(2)                                                              <---------ARR14(2)             --------->At5g28300                              --------->AGP1            --------->TOE2(3)                                 <-----------ARR10            ------->GAMYB                                     <---------ARR14(3)            ----------->GT1                                   --------->ARR14(3)            --------->TOE1(3)                                 --------->ARR11(3)            --------->ANAC46                                  <---------AGP1          -------->P                                          <---------ARR11(3)        --------->At4g35610    --------->ARR14(2)                                  <------NtERF2       ------>MYB46(1)    <---------GLK1(2)     <---------At4g35610          <-----------HVH21    ------>MYB83<---------ZAT2    <---------ARR14(2)    --------->At4g35610         <---------DEAR3(1) --------->ANAC46 -->ALFIN1<---------At5g28300          --------->At4g35610   <---------CCA1(2)          <---------At4g35610 ---ZAT6 --------->MYB52(1)            <---------At4g35610  ----------->ARR10           --------->ZAT2   tagacagatactaaccgtaacattacgaagcagagactggctgatgtcgaacaaggtcgtcgcagatcttcgtaaacccaacatcgtcgaagctcagttt  29236400                                                                ------->MYC3                                                               --------->O2                                                             <---------ALFIN1                                                           ------>NtERF2                                                           <------NtERF2                                                          --------->ANAC58                                                          --------->RAP2.6(2)                                                          <---------ATERF1(1)                                                          --------->ANAC46                                                         --------->DEAR3(1)                                                         --------->SPL7                                                      --------->DEAR3(1)                                                     --------->DEAR3(2)                                                     <---------MYB55(2)                     <--------                                                     --------->MYB46(3)                ------->TEIL                                                     <------------AtMYB77           --------->ANAC58                  *TSS                    <-------TEIL------->GAMYB   --------->WOX13(1)    =========                 <---------YAB1          --------->GLK1(2)--------->ANAC58        ===================              --------->ICU4          <---------TOE2(3)  --------->MYB46(3)       ---------->DOF2          --------->At5g28300         <---------YAB1-------->P------>NtERF2   --------->ANAC58        <---------DEAR3(1)  <---------ZAT14         ------>MYB83<-------MYC3  --------->ANAC58     ----------->HVH21     ----------->HVH21        ------>MYB46(1) ------------>CBF--------->ANAC58   --------->CCA1(2)------->TEIL      <---------TOE1(3) --------->ATERF1(1)   --------->ANAC46     --   cagagatttgacggtgaagatgaatgtgagtgaagggtttaagattcagtttccaaccgcccgccacgttttcaatccaaacgcaaacgcacttctttct  29236500               <----------DOF2         --------->ALFIN1     --------->ANAC55(2)     <---------ANAC58            --------->ATHB12     <---------ANAC55(1)         --------->ATHB51     <---------bZIP60(2)        <---------YAB1     <---------ANAC58         -------->ATHB1     <---------TGA1a          --------->YAB1     <---------O2             <---------ICU4     --------->O2            --------->AHL20(2)                             <---------TOE2(3)     ===============================================bZIP_DOF       --------->MYB52(1)     =====================bZIP_DOF                              --------->ANAC58         ------>MYB83     <---------ANAC46        <---------YAB1                     <---------ANAC55(2)      ------>MYB46(1)  ----------->HVH21   ----------->GT1        <---------AHL20(2) --------->ANAC55(2)    --------->DEAR3(1) --DOF2--------->ALFIN1      <---------AHL20(2)        <---------ANAC58     <---------YAB1 ==============bZIP_DOF      --------->AHL20(1)        <---------ANAC58     <---------TOE1(3) ==============bZIP_DOF      --------->ICU4 --------->AHL20(2)  --------->ANAC58       --------->DREB2C(2) ---->ZmHOX2a(1)    ---------->DOF2      <----------DOF2    <-----------HVH21         --------->DEAR3(2)   cctcttgacgtgttgggctttgaaaagaaaaattattattgggctttttaatagaggccttgtgtcaagtaagggcttaagattatacaccgacttctta  29236600                                                            --------->GLK1(2)                                                          <---------AHL20(2)                                                         --------->AHL20(1)                                                         <---------AHL20(1)                                                         --------->AHL20(2)                                                         <---------AHL20(2)                                                      --------->AHL20(2)                                                    --------->AHL20(2)                                                   --------->YAB1                                               --------->ANAC58                  ----------->GT1                                               --------->ANAC58                 --------->DAG2        <------NtERF2     <-----------GT1      ----------->GT1                 ---------->DOF2   agagagaggcctcgaatatagagaatattatcccaattcttgggatagaacgaaaataatataatctgtgagaaaaacatataaagtaattcaagacttc  29236700                                                                   <---------AHL20(2)                                                               <---------AHL20(2)                                                              --------->AHL20(1)                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                                       <---------AHL20(2)                                                      <---------YAB1                                                     <---------AHL20(2)                        --------------->AGL15      <---------YAB1<---------AHL20(2)                   <---------MYB59                <---------AHL20(2)   <-----------GT1              --------->At4g35610                 <---------AHL20(1) <-----------GT1              <---------At4g35610               <---------YAB1<---------AHL20(1)               ------   aagttactcaaacttgagctatctaactatatatatcaaactacaggtttattatttttatttatatattttttcacttcaattcaaactttttaaaaaa  29236800                                                     <---------AHL20(2)          <---------TOE2(3)                                                    --------->AHL20(2)           <---------TOE1(3)                                              <-----------GT1                    <---------ANAC46     <-----------GT1                      <---------YAB1<---------CCA1(2)   <------MYB83 --->AHL20(2)                            <---------TOE2(3)                  <------MYB46(1)   aatcaatttactctctatttttcaaaatttccaaatttttgtttatgttaactattttatatccattaccacattatttggttaagggtagaatttggca  29236900  Previous    Next  AGI:  At1g77750.1    Description:  30S ribosomal protein S13, chloroplast, putative. Identical to Small ribosomal subunit protein S13, mitochondrial precursor (RPS13) [Arabidopsis Thaliana] (GB:Q9CA19); similar to 30S ribosomal protein S13, chloroplast (CS13) [Arabidopsis thaliana] (TAIR:AT5G14320.1); similar to unknown [Populus trichocarpa] (GB:ABK96168.1); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892) Range:  from: 29235048    to: 29236418    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version