Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->ANAC55(1)                                                               --------->ANAC58                                               <---------ZAT2  --------->ANAC46                                               --------->ZAT2  ----------->GT1           ---------->DOF2                     --------->At4g35610   ----------->RAV1(1) ---------------------WRI1                     <---------At4g35610  --------->MYB46(3) ----------HVH21                       <---------ANAC58        --------->ANAC58 ----------TGA1                        <---------ANAC58<---------AHL20(2)                        ---- ------>ANAC46     <---------REM1(1) <---------YAB1    --------->AHL20(2)          <---------MYB52(2)   tcgtcacatctaacaaagaagttgtagatttatgggatgatgcttactctgctggatttaaacacaggtaacaacagatgatgctactaactagttttcc  29020600                                                      <---------ANAC58  --------->AHL20(1)                                              ------------>AtMYB77 --------->AHL20(2)            <---                                           <---------ICU4          <---------AHL20(2)            <---              <---------------AGL15     --------->ANAC55(2)        --------->AHL20(1)            ----              <----------DOF2           <---------ANAC55(2) --------->ANAC46             --------->ICU4   <----------DOF2                  ------->TEIL   <---------GLK1(2)    <---------AHL20(2)       ----  --------->TOE2(3)         ----------->ARR10----------->HVH21  --------->YAB1           <---------YAB1 -->ZmHOX2a(1)--------------->AGL15<---------CCA1(2)  <---------ANAC58  --------->AHL20(2)      <----   tctacctttacacaaactttattgagaagttagatttgtatctcgtaatgacagtttcttacacaaaaataaaataaaatacaaatttgtcatgactaat  29020700         --------->ARR11(3)         <---------ARR11(3)                                                        <-----------------AGL1   <---------YAB1                 ------------>CBF                                 ----------------->AGL1 ------AHL20(1)              <---------MYB46(3)                                   <---------At5g28300 ------ARR11(3)          <---------YAB1                ----------->RAV1(1)       <-----------GT1 ----->AHL20(1)    <---------AHL20(1)               --------->ANAC46         <---------AHL20(2)  ---- ----->ARR11(3)    --------->ARR11(3)            ------>NtERF2     <---------TOE2(3)        <-------- -----CCA1(2)     <---------CCA1(2)         ------->TEIL  ---------->DOF2   <---------AHL20(2)  -----   atcttatgaaacatcttctcatatattgtgtttgttctcaattctgaaccctgcccacaacaaagagttaagtttttttttatttaccctactgggtcct  29020800                       ------->TEIL                     --------->ZAT14                   --------------->AtSPL3           --------->ANAC46          <---------HSFB2a(2)          --------->HSFB2a(2)                                                                   <----     --------->At4g35610     <------ZmHOX2a(2)                                    <---------YAB1<----     <---------At4g35610    <---------ARR14(2)                     --------->ANAC58             ----- ------>DOF2--------->LBD16 --------->ARR14(2)                     --------->ANAC58            ------ -PCF2  -------->P --------------->AtSPL8                 <---------ANAC58      --------->YAB1 <----- ->ZmHOX2a(1)    --------->GLK1(2)     --------->ZAT6     <---------ANAC58    <-----------TBP  ------   aaagctcatctacccgaagaaactgtacccgatccaacttaacacaagatggtaagagtttcttatcggacccaagttcgatttataatgggctaaatta  29020900      ----------------->AGL1 -----AHL20(2)                                                                              <-------- -----AHL20(1)               <----------DOF2                                            <---------MYB46(3) ---->AHL20(1)          ------>NtERF2                                           ----------->TBP --->YAB1              --------->DEAR3(1)                                  --------->RAP2.3(2) ----AHL20(2)    <---------bZIP60(2)                            <------------CBF--------->AHL20(2) --->AHL20(2) ----------->HVH21               <---------LBD16 --------->ICU4  <----------DOF2   tattcgagcccaaatcgtgacagggccgactctttttttttttttttttggggagagattagccctaattgagagagccgctttaaatagttgttcatgg  29021000                                                                                     ================                                                                                     ------>ZmHOX2a(2)                                                                                    <------ZmHOX2a(2)                                                                                    <---------HSFB2a(1)                                                                                    --------->HSFB2a(1)                                                                                    --------->HSFC1(2)                                                                                    =================                                                                                   <---------ARR14(2)                                                                                   --------->ARR14(2)                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)                                                                                   <---------ARR11(1)                                                                                   <-----------ARR10                                                                                   <---------ARR14(3)                               --------->ALFIN1                                    --------->ARR14(3)                             <---------O2                                         <---------CCA1(2)                             <---------ANAC46                                     <---------ARR14(1)                             <---------ANAC58                                    --------->LBD16                             <---------ANAC58                  <------MYB46(1)  --------->ANAC46                             <---------bZIP60(2)               <------MYB83     --------->LBD16                           <---------DOF5.7(2)                <---------AtMYB61--------->HSFB2a(2)                        <---------At4g35610                 <---------MYB52(1) <---------LBD16      <                        --------->At4g35610                 --------------------->WRI1    <----------DOF2                       ------->TEIL   --------->ANAC58  ------>ZmHOX2a(2)     <---------LBD16 <------                    <---------REM1(1) --------->ANAC58 <------ZmHOX2a(2)   <---------GLK1(1)  -------          --------->ZAT14  --------->MYB52(1)         <---------ARR11(3)   --------->GLK1(1)  <------ -AtLEC2  <---------ZAT14<---------MYB52(2)           --------->ARR11(3)   --------->HSFB2a(1)-------   agcgaagaacagagtagagaagatgaagctaacgtggaacaagaaccctaagaaacgatctcgtttggttttatcgaatttcccggatcttcctttcgag  29021100                                                                                             <------MYB46(1)                                                                                             <------MYB83                                                                                            ---------                                                                                            ---------                                                                                           <--------P                                                                                          <-------GAMYB                                                                                         --------->MYB55(2)                                                                                         <---------MYB46(3)                                                                                        <---------TOE2(2)                                                                                   <-----------HVH21    <---------GLK1(2)                                                             --------->TGA1a  <---------YAB1                                                                  <---------O2 ======HOX2a_HOX2a                                                                ================MYC_MYB ======HOX2a_HOX2a                            <---------ARR11(3)                  --------->O2 ------ZmHOX2a(1)                             --------->ARR11(3)       <---------ATHB12<------NtERF2 ---HSFC1(1)                             --------->ICU4           --------->MYB52(1) <---------DEAR3(1) -->HSFC1(1)                        <---------ANAC58            --------->MYB46(3)==================MYC_MYB ---HSFB2a(2)                       <---------ANAC46            <---------MYB52(2)<---------TGA1a   < -->HSFB2a(2)<---------GLK1(2)      <---------ANAC58  ------>ZmHOX2a(2)<------ZmHOX2a(2)<---------TOE1(2)   aaggatgattctctagagtctcaatctcatcttcattttcgtgaagatgatattgatcgtagacaaactaccgatcaattggactcgtcggaggttggag  29021200       ------>ZmHOX2a(1)                                                                  <---------REM1(1)  --------->YAB1                                                                        <---------ZAT2 <---------HSFC1(2)                                                                     ----------->RAV1(2) --------->HSFC1(2)                                                                     <---------At4g35610 <---------HSFB2a(1)                                                                    --------->ZAT2 --------->HSFB2a(1)                                                      --------->At4g35610 ------- >MYB111(2)                                                               <---------At4g35610 <------ >ALFIN1--------->O2                            --------->ZAT18 <----------ID1<---------TOE2(3) ---------KAN4(2)                ----------->ARR10   ---------->DOF2    --------->ZAT18 --------->At4g35610   ggaatcatcctcgtgagaatttcgatgtcgaagctaagaaactcgcagagtccattagagcccaaggagacaagttcgctgaggtaaaccagctgtagct  29021300                                                              --------->At4g35610                                                              <---------At4g35610                               --------->AHL20(2)          <-------TEIL                         --------->ANAC55(2)         <----------DOF2           <---------ARR11(3)  <---------AHL20(2)  ------->TEIL           --------->ARR11(3)<-----------TBP     <---------ZAT18     --------->TOE1(3)  <---------TOE2(3)        --------->ZAT14     --------->TOE2(3)  --------->MYB59          --------->ZAT18 -->At4g35610     <---------AHL20(2)             <---------ZAT14     <------ZmHOX2a(1)          <---- ---At4g35610    --------->AHL20(2)     ------------>CBF<---------MYB46(3)               <---------YAB1   aaataaaccctaaaatctataaaatttaggtatttaaatttcagcaatttgtgtactttggttcatcggaaggagttagcatcacgttgttgtgatcaca  29021400                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                XXXXXXXXXXXXXXXXXXXXX                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxx>smallRNA(le3)               <--------P                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          ------>ZmHOX2a(2)                                               --------->ATHB12      ----------->HVH21                                                  --------->ICU4    <---------bZIP60(1)                                                --------->YAB1    <---------ANAC46                                              --------->ARR14(2)      <----------    --------->bZIP60(1)                                <---------MYB46(3)<---------YAB1  <-----------GT1 --------CBF  *TSS                               <----------DOF2 <---------CCA1(2)------>NtERF2  <---   ttggtgatgtgatcgtggtagataagtttgagttgcatagtggcagtcttcctttgtttgttaacccatattttcatgattcgaggcctattaaacctct  29021500  Previous    Next  AGI:  At1g77220.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38360.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO60875.1); contains InterPro domain Protein of unknown function DUF300 (InterPro:IPR005178) Range:  from: 29017611    to: 29020697    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g77230.1    Description:  tetratricopeptide repeat (TPR)-containing protein. similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT4G08320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61935.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 29021023    to: 29022858    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g77235.1    Description:  MIR402; miRNA Range:  from: 29021414    to: 29021722    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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