Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <-----------GT1                                     <---------YAB1           ------>MYB83<---------MYB111(1)                                        ------->TEIL           ------>MYB46(1)  <---------ZAT14                               <---------ARR11(3)       <-          ----------->RAV1(1)      --------->YAB1                         --------->ARR11(3)    ----- ------->AHL20(2)      --------->MYB46(3)                      ---------->DOF2 <---------YAB1   ----- ----YAB1--------->AtMYB61  --------->ZAT14          --------->GLK1(2)---------->DOF2      ------>ZmHOX2a(2)   attacattacaccaacaaattcccaactactatactgtcataatacaactccaagaatcaatgtccaaagcctaaagatttatgaatctatgatccaata  28966400                        --------->ZAT18                                                    --------->HSFB2a(1)                        <---------ZAT14                                                    <---------HSFB2a(1)                        --------->ZAT14                                                    <---------HSFC1(2)                        <---------SPL7                                                     --------->HSFC1(2)                      <---------------AtSPL3                                              ------->TEIL ----------GT1        <---------------AtSPL8                       <------ZmHOX2a(1)   <---------MYB52(2) ------>GT1      ---------->DOF2 --------->DAG2     --------->ANAC58                  --------------- ---->YAB1    >>>>>>>>>TBF1     ---------->DOF2     --------->ANAC58            ----------->GT1   gtaacattctcaagaagaagaaagagtgtacgaataaagctacagagtaagagcaagacaagaagaagaggaatcaagaacagagtgaaacgaaccttct  28966500                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                  ---                                                                                             ========                                                                                             ========                                                                                          --------->HSFB2a(2)                                                                                        <------NtERF2                                                                                      <---------DEAR3(1)                      --------->HSFB2a(1)                                            --------->ATERF1(1)                      <---------HSFB2a(1)        --------->ANAC46                    <------NtERF2---                     <---------GLK1(1)         <-----------GT1          <---------GLK1(1) <---------HSFB2a(2)                <---------LBD16       <---------ARR11(3)      ------>ZmHOX2a(1)     <---------RAP2.6(3)      <-------TEIL <------ZmHOX2a(1)  --------->ARR14(3)   <---------ATHB12         <-----------HVH21 <-----------RAV1(2) --------->GLK1(1)--------->ARR11(3)  <---------ARR14(2)       --------->DEAR3(1) >AtSPL8   --------->DEAR3(2)         <---------ARR14(3)  --------->ARR14(2)  ---------->DOF2<------ZmHOX2a(1)   tcatcaggttcggacagaccaggaactctcccagcgagaagaccttgtttaacgacagccaatccttcccttggaaatgctaaagccgtcgtcgaggaga  28966600        ------>NtERF2       --------->bZIP60(1)       <---------bZIP60(1)       <---------TGA2(1)       --------->ANAC58       --------->ANAC58       --------->ANAC46    ----------->TGA1------>ZmHOX2a(2)    ----------->HVH21  ----------->RAV1(2) ------->P         <------ZmHOX2a(2)        <---------ALFIN1 ----->MYB46(1)   --------->ARR11(3)        --------->AtMYB61    --------->LBD16 ----->MYB83      <---------ARR11(3)     --------->ANAC58       --------->LBD16 ------>MYB46(3)  <---------ARR14(2)     --------->ANAC46      <---------LBD16         <---------ICU4 =========================HOX2a_HOX2a    --------->ANAC58    ------>ZmHOX2a(1) --------->ARR14(2) ==========================HOX2a_HOX2a  --------->ZAT18  --------->ARR14(2)    <---------GLK1(2) ------>AtMYB61   --------->ARR14(2)    <---------ZAT18  <---------ARR14(2)<---------LBD16      <----   ccaaccctgacgccattaccgatcttctactcaaaaccctagcacaccactcgtcttcgcatcctcccggactcgttttcggaatctcactattacttct  28966700                                               --------->ZAT2                                               <---------ZAT2                      <---------LBD16          --------->At4g35610                   ----------->HVH21           <---------At4g35610               <---------ANAC58          --------->MYB52(1)          <---------GLK1(2)             <---------ARR14(2)          --------->ARR11(3)            --------->ARR14(2)                       <---------HSFB2a(2)          <---------ARR11(3)       --------->ANAC46                    ------>NtERF2         <---------RVE1(1)      --------->WRKY12                      <---------DEAR3(1)        ----------->ARR10   --------->DAG2  --------->LBD16          <---------LBD16        <--------    <---------At4g35610    ---------->DOF2<---------LBD16      <---------ICU4    --------->HSFC1(1)    --------->At4g35610 --------->LBD16<---------SPL7         <---------ATHB12   --------->HSFB2a(2) ------DOF2    <---------ANAC58 ----------->HVH21   <---------At4g35610--------->LBD16      <--------   ttgatgagcagagattttcttgtgaccggaaaagttgacgcagtaccggagcagagctgtttccatcattctccggcgaagttcgagaattgtgatgtgt  28966800                                                                          ------------>CBF                                                                       -------->ABF1                                                                       <-------MYC2                                                                       ------->MYC3                                                                       <-------MYC3                                                                       ------->MYC2                                                                       ------->MYC4                                                                       <-------MYC4                                                                      --------->O2                                                                      <---------O2                                                                      <---------ANAC55(2)                  <---------ANAC58                                    --------->ANAC55(2)                  <---------ANAC58                                    --------->TGA1a                 <-------TEIL                                         --------->ANAC46         <-----               --------->ARR14(2)                                     <---------TGA1a          ------               <---------ARR14(2)                 -------->P        <---------ALFIN1          <------   <-------GAMYB*TSS                     <---------ANAC46  <---------ANAC58                   -------  <---------MYB46(3)                     <---------WOX13(1)<---------ANAC58    <-----------HVH21  --------->MYB52(2)       <---------ALFIN1       ==============================MYC_MYB  --------->At5g28300 -bZIP60(2)    <---------GLK1(2) <----------DOF2 <-----------GT1  <---------ALFIN1      ----------->GT1 -ANAC46  ----------->RAV1(1)    ===============================================bZIP_DOF<---------ZAT6   ttgtttgttgatcaacagattcgtggctctcacctcttttgtgatggatactaaccattttgctagcctcacacgtgtcaatgtcacttactgtaaataa  28966900                                                                                      <---------MYB46(3)                                                                                  --------->ATHB12                                                                                  --------->ATHB51                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <---------AHL20(2)       <---------ICU4             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------YAB1 <---------ANAC55(2)              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------AHL20(2) --------->ANAC55(2)             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->AHL20(1) ----AHL20(2)                    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------AHL20(1)   <- --->AHL20(2)                   ------------------------>ANAC81               --------->AHL20(2)   -- ---AHL20(2)            <---------WOX13(1)        --------->DAG2             --------->AHL20(2)   <-- -->AHL20(2)          --------->ATHB12           ---------->DOF2         <---------YAB1        <-----   atcacataataagttcgatagagttgattgacaaaaaaaaaaaaaaaaaaaaaaagttcgatagagttttcagttttgattatattattggttaatgctg  28967000                                                                               --------->YAB1                                          --------->TOE2(3)                 --------->YAB1      ---------->DOF2                     --------->YAB1                   <---------YAB1 --------AHL20(2)          --------->AHL20(2)                              --------->ICU4           - ------->AHL20(2)          <---------AHL20(2)                            --------->YAB1             - -------WOX13(1)      >>>>>>>>>GT-1       --------->TOE1(3)<---------AHL20(2) <---------YAB1        - ----YAB1          ----------->GT1  --------->YAB1  <-------TEIL<---------AHL20(2)          <--------   attaattcaaaagtagagttttggttaatataaatctaaaataatcttaaaaaatgcatattgaatttttttctgtcattataagaatgcatattgaatt  28967100           --------->AHL20(1)           --------->AHL20(2)       --------->AHL20(2)      --------->AHL20(2)      <---------AHL20(2) ----------->GT1                                  --------->TOE2(3) -------->ANAC58                               <-----------GT1                         ------------>CBF -------->ANAC46          <------------CBF--------->AHL20(2)                    --------->GLK1(1) -------->ANAC58--------->AHL20(2)        <---------AHL20(2)                    <---------GLK1(1) -AHL20(2) <---------AHL20(2)  <---------------AtSPL8       ------->TEIL      <------ZmHOX2a(1)   acaaggaaataaataaaataaactagaatattgaatgtacagaattaataaaccatagtatgtattttgcaaaataagtaggatatcaagtcaatatttg  28967200                                                                   --------->ZAT14                                                                 --------------->AtSPL8--------->ARR14(2)                                --------->DAG2      --------->TOE2(3)                  <---------ZAT14                               ---------->DOF2    <---------ARR14(2)                   --------->ZAT14                 <------------CBF                 <---------ARR11(3)                   <---------ARR14(2)               --------->ARR11(3)                 --------->ARR11(3)      <------------CBF    -------               --------->AHL20(1)                --------->RVE1(1) <---------ZAT14  <---------ANAC46               <---------AHL20(1)      --------->YAB1          <-----------GT1   --------->DAG2       <-----------GT1    <---------YAB1        ------->TEIL<------------CBF    ---------->DOF2   ---   tttttggtttaaccatatatattggattatgagaaaagtaatagtaaatgaatatcttagaatattgactgtacaaaattgataaagcgtatactgtatg  28967300  Previous    Next  AGI:  At1g77090.1    Description:  thylakoid lumenal 29.8 kDa protein. Identical to Thylakoid lumenal 29.8 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O49292); similar to thylakoid lumenal 20 kDa protein [Arabidopsis thaliana] (TAIR:AT3G56650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60896.1); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) Range:  from: 28965281    to: 28966816    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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