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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(1)
--------->
ARR11(3)
<---------
AHL20(1)
--------->
ICU4
------
-------
AHL20(2)
<---------
YAB1
--------->
ANAC58
--------->
TOE2(3)
------
------>
YAB1
<---------
bZIP60(1)
--------->
ANAC46
--------->
ANAC46
<-----
------>
AHL20(2)
--------->
bZIP60(1)
--------->
YAB1
--------->
TOE2(3)
<-------
--->
YAB1
------>
ZmHOX2a(1)
------>
MYB83
--------->
ZAT18
>>>>>>>>>
RAP2.2
--------->
ZAT14
---
AHL20(2)
--------->
TOE1(2)
------>
MYB46(1)
<---------
AHL20(2)
<---------
At5g28300
->
AHL20(2)
--------->
TOE2(2)
--------->
TOE1(2)
--------->
AHL20(2)
--------->
YAB1
-->
AGL15
<---------
ARR11(3)
<---------
YAB1
--------->
ANAC58
--------->
WOX13(1)
<---------
ZAT14
taatatattgatacaaaatcctatgaggtcatttttgatgatacctacaattacaagccccctataaaatcaatctaaaccacaattacagtatacaaat
28870000
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
--------->
ANAC58
--------->
AHL20(2)
--------->
ANAC58
--------->
AHL20(2)
--------->
MYB52(1)
----------->
GT1
<---------
AHL20(2)
--------->
GLK1(2)
--->
ARR11(3)
--------->
YAB1
--------->
HSFC1(2)
--->
ARR14(2)
----------->
GT1
<---------
LBD16
<---------
HSFB2a(1)
--
----
ARR14(2)
---------->
DOF2
<-----------
GT1
----------->
GT1
<---------
HSFC1(2)
---
--------
AGL15
----------->
GT1
<---------
At5g28300
<------
ZmHOX2a(1)
--------->
HSFB2a(1)
<-----
cttggtaagaaaatacaaagtgaaaaataatttaccccaaaactcggaaaatagaggagagagaaatttgagaagattccattttggcacaaacagagga
28870100
------
-------
<------
ZmHOX2a(2)
<-------
--------
<---------
ANAC55(2)
<-------
---------->
DOF2
----------->
GT1
<-------
--------->
YAB1
--------->
MYB59
<---------
AHL20(2)
--------
--------->
AHL20(2)
<---------
AHL20(1)
<-------
--------------->
AGL15
---------->
DOF2
<-------
<---------------
AGL15
<---------
AHL20(2)
<---------
TOE2(3)
<--------
------->
DAG2
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
------->
DOF2
----------->
GT1
----------->
GT1
--------->
AHL20(1)
--------->
ANAC58
-
ZmHOX2a(1)
---------->
DOF2
---------->
DOF2
--------->
AHL20(2)
<---------
WOX13(1)
aaaagtatcaataaaaagaaaagaaaataggtaaaaaagaaataaatcgaaagaaatatataaatgttagaatggctccttgagattgacaagcagatct
28870200
--------->
At4g35610
>
ZmHOX2a(2)
-->
GLK1(1)
--
ARR14(2)
->
ARR14(2)
<-----------
GT1
--
AGP1
---------->
DOF2
<XXXXXXXXXXXXXXXXXXXX
MIR781
--
ARR11(3)
----------->
GT1
--------->
ANAC55(2)
->
ARR11(3)
--------->
DAG2
<---------
TOE2(2)
<---------
ATERF1(1)
----
ARR10
---------->
DOF2
--------->
MYB59
----------->
RAV1(2)
--
ARR14(3)
--------->
AHL20(2)
<---------
TOE2(3)
---------->
DOF2
<-----------
GT1
-
CCA1(2)
--------->
YAB1
--------->
AHL20(2)
--------->
ZAT6
------>
NtERF2
-
catcaccagacaaatataaaataaagtaaagaaattaacttaggtatttacaaaactctctaacaccataaaaccctgcgcccagagatttcactcttct
28870300
<---------
AHL20(2)
<----------
DOF2
---------->
ID1
<----
<-----------
GT1
-----
<---------
AHL20(2)
*
TSS
<----------
DOF2
<-----------
GT1
<---------
AHL20(2)
<-----------
GT1
----->
ZmHOX2a(1)
<----------
DOF2
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
tcctcatgtaaactctctctttctctctctctctttatctctcccattttttttttcttctctaaatttttattttttctcttttttattttt
catttct
28870400
<-
---------->
DOF2
----------->
GT1
<-
<---------
WRKY12
<----------
ID1
<-
--------->
LBD16
------------------------>
ANAC81
<--
<-----------
HVH21
---------->
DOF2
---
--------->
ANAC46
------------------------>
ANAC81
<--
-----
HSFB2a(2)
----------->
GT1
--------->
AHL20(2)
<--------
---->
HSFB2a(2)
----------->
GT1
<------
ZmHOX2a(1)
<----------
DOF2
---------
gtaacttcttctccgtcaaagacacagagagtagaaaaaaaagaaaaacagaggaacagattaaaaaaaaaaaaactttattaaacg
atgatgcaactgg
28870500
<-----------
TGA1
--------->
ATERF1(1)
<------
NtERF2
--------->
At4g35610
<---------
DEAR3(2)
<---------
ERF1
------>
NtERF2
<---------
MYB46(3)
<---------
RAP2.3(1)
<---------
ANAC46
<---------
RAP2.6(2)
<---------
DEAR3(1)
--------->
ATERF1(2)
--------->
DEAR3(1)
<---------
ATHB12
--------->
DEAR4(2)
----------->
RAV1(1)
<---------
DEAR4(2)
--------->
ABI4(1)
<---------
ATERF1(1)
------>
NtERF2
<---------
RAP2.3(1)
--------->
ANAC58
--------->
ZAT6
<-----------
HVH21
--------->
DEAR3(1)
--------->
AtMYB61
--------->
ANAC46
--------->
RAP2.6(2)
------>
NtERF2
<------
NtERF2
--------->
ANAC46
<---------
SPL7
<---------
DEAR3(1)
--------->
ANAC58
<---------------
AtSPL8
--------->
RAP2.3(1)
--------->
DREB2C(2)
---
--------------->
AtSPL3
--------->
ATERF1(1)
--------->
DEAR4(1)
<--
<---------
AtMYB61
<---------
RAP2.3(2)
------->
GAMYB
------
-----
MYB46(1)
<---------
At4g35610
--------->
MYB46(3)
------->
GAMYB
--------
MYB46(3)
--------->
At4g35610
--------->
ABI4(1)
--------->
At4g35610
-----
MYB83
--------->
MYB46(3)
--------->
MYB46(3)
<---------
ALFIN1
----------->
RAV1(1)
-------
DEAR3(1)
---------->
DOF2
------->
GAMYB
--------->
AtMYB61
=============
------>
ALFIN1
--------->
ZAT14
<------------
AtMYB77
--------->
DEAR3(1)
<------
NtERF2
-
-------
AtMYB61
<---------
ZAT14
--------->
MYB46(3)
<---------
ABI4(2)
--------->
RAP2.6(2)
-
ZAT2
<---------
ETT(1)
<---------
ATERF1(1)
--------->
MYB46(3)
--------->
At4g35610
>
ZAT2
--------->
DEAR3(1)
--------->
REM1(1)
--------->
REM1(1)
<<<<<<<<<
ARR2
<---------
At4g35610
gtggtggtactccgaccactacagcggcggctacaaccgtcacaactgctacagcaccaccgccacaatcaaacaacaacgattcagcggcaacagaagc
28870600
--------->
ANAC58
--------->
ARR14(2)
<------
ZmHOX2a(1)
<------
MYB46(1)
======================
<------
MYB83
======================
<---------
MYB46(3)
<------
NtERF2
--------->
ALFIN1
------>
NtERF2
--------->
ALFIN1
----------->
RAV1(1)
<---------
MYB52(1)
<------
NtERF2
<--------
P
<---------
DEAR3(1)
<-------
GAMYB
--------->
ATERF1(1)
--------->
MYB55(2)
<---------
ATERF1(1)
<---------
MYB46(3)
<---------
LBD16
<---------
At4g35610
<---------
At4g35610
--------->
At4g35610
<------
NtERF2
------------>
AtMYB77
------>
NtERF2
<---------
ZAT2
--------->
At4g35610
<---------
At4g35610
--------->
LBD16
--------->
ZAT2
<---------
RAP2.3(1)
--------->
At4g35610
<---------
ATERF1(1)
<------
NtERF2
--------->
ETT(1)
<---------
RAP2.3(2)
----------->
RAV1(1)
<---------
ANAC46
<---------
DEAR3(1)
<-----------
RAV1(2)
<------
NtERF2
<---------
RAP2.6(2)
<--------
<------
NtERF2
<-----------
HVH21
<---------
MYB52(1)
--------->
WRKY38(1)
<---------
ANAC58
--------->
At4g35610
--------->
ALFIN1
--------->
ANAC58
--------->
WRKY12
--------->
ANAC58
------>
At4g35610
<---------
TOE2(3)
--------->
ANAC58
<---------
MYB52(1)
<---------
ANAC58
-------
At4g35610
<---------
ANAC58
----------->
HVH21
--------->
ATHB12
<---------
ARR14(2)
--->
At4g35610
<---------
ANAC58
--------->
ANAC46
<---------
GLK1(1)
--------->
ANAC58
<
=============
RAV
<---------
ANAC46
<-------
TEIL
--------->
GLK1(1)
--------->
ANAC58
-
---------->
RAV1(1)
<-------
GAMYB
--------->
CCA1(2)
<------
ZmHOX2a(1)
<-----------
RAV1(2)
-
agcggcagcagcggttggggcgtttgaggtgtcggaagagatgcacgaccgtgggtttggaggaaatcgttggccgcggcaggaaacgctagcgttgttg
28870700
<---------
bZIP60(2)
==========================================
bZIP_DOF
<---------
O2
----------->
HVH21
<---------
MYB52(1)
------>
ZmHOX2a(2)
<---------
DOF5.7(2)
<------
ZmHOX2a(2)
---------->
DOF2
--------->
ARR14(2)
--------->
DOF5.7(2)
<---------
ARR14(2)
--------->
TOE1(3)
============
HOX2a_HOX2a
--------->
ANAC58
<---------
DAG2
=============
HOX2a_HOX2a
--------->
ANAC58
----------------->
AGL1
-
MYB46(3)
<---------
TGA1a
--------->
HSFB2a(2)
<-----------------
AGL1
<---
---------
ARR14(2)
<---------
HSFB2a(2)
----------------->
AGL1
------
-------->
TOE1(2)
<---------
ANAC58
--------->
TOE2(3)
<-------
TEIL
<----------
DOF2
-------->
ARR14(2)
<---------
ANAC58
<---------
ZAT6
<---------
TOE1(2)
<---------
DAG2
aaaatacgatctgacatgggaatagcgtttcgagacgctagcgttaaaggtcccttatgggaagaggtttctag
gttcgcgttttcttctccctttcctc
28870800
<---------------
AGL15
<-----------------
AGL2
--------------->
AGL15
------->
TEIL
<-----------------
AGL1
--------->
ICU4
<-----------------
AGL3
<---------
YAB1
---------->
ID1
--------->
YAB1
<---------
DAG2
<---------
ICU4
<----------
DOF2
--------->
ATHB12
<---------
DAG2
<---------
YAB1
<---------
YAB1
<-----------
GT1
<-----------------
AGL1
<-----------
GT1
<------------------------
ANAC81
--------->
ICU4
-------
DOF2
<----------
DOF2
<----------
DOF2
<----------
DOF2
<---------
AHL20(2)
<---------
YAB1
>
ZmHOX2a(1)
--------------->
AGL15
<-----------
GT1
<-----------
GT1
----------------->
AGL1
tttattcccttttcctttttttggtatacttctttttccactctctctttttttcttctctgaattttttgttttctaattgggaatgattatgaaactt
28870900
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AGI:
At1g76880.1
Description:
trihelix DNA-binding protein, putative. similar to GT2, transcription factor [Arabidopsis thaliana] (TAIR:AT1G76890.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO43639.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005)
Range:
from: 28870394
to: 28873119
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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