Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------YAB1                                                                       <-----------------AGL3                                                                       <-----------------AGL2                                                                      <---------At4g35610                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                     --------->ATHB12         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <-------GAMYB                     xxxxxxxxxxxxxxx>smallRNA(le3) ------->ATHB12           --------->At5g28300              xxxxxxxxxxxxxxxx>smallRNA(s)             - --------ICU4            <---------MYB46(3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          < -------YAB1             ----------->GT1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <-- ---->YAB1           ----------->HVH21     <----------ID1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xx ----YAB1      <----------DOF2    --------->MYB52(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxx   atcatttgattttgagtctttttttgacggttaaaacaacgatttgggacgaagttataggccctgaatggatgctgattttggattcagtttttgaatt  28597700                                                 <---------AHL20(2)                                              <---------AHL20(2)                                              <---------AHL20(1)                                              --------->AHL20(1)                                             --------->AHL20(2)                                             --------->YAB1                                            <---------YAB1                                          <---------ICU4              <---------ARR11(3)      <---------AHL20(2)              --------->ARR11(3)      <---------YAB1 -------->ARR11(3)                <---------GLK1(2) ---------ARR11(3)   <---------ARR11(3)   --------->YAB1                                            < -------TOE2(3)      --------->ARR11(3)  <---------YAB1                                            -- xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------RVE1(1)                   <---------AHL20(2)       ----- xxxxxxxxxxxxxxxsmallRNA(le3)     --------->ARR11(3)                   --------->AHL20(2)      xxxxxx   tagattttagtttatagattttagattttagtttcagatttttattattatatttttgtttcaaaaaccccaaaaaattggtttttggtttttgagaaaa  28597800                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       <---------WOX13(1)                                    --------->ATHB12     <---------AHL20(2)     <---------MYB46(3)                                     <---------YAB1        --------->AHL20(2)     --------->ATHB12                 <------ZmHOX2a(1)   <---------ICU4    --------->ANAC58    <---------YAB1          ------>ZmHOX2a(1)             --------->YAB1    --------->ANAC46  --------->TOE2(3)    --------->GLK1(1)                --------->ARR11(3)  --------->ANAC58 ---------TOE2(3)     <---------GLK1(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->MYB52(1)     <---------ARR11(3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<-----------GT1 ---->YAB1----------->GT1  --------->TOE2(3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->AHL20(2) xxxxxxxxxx>smallRNA(i)<---------GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->AHL20(2)   ataacgttgattgagtaaaaactagatttcctaaattttaggagaactaaaaaactaaaatcatgaatggaaaactacaagaaaataatttttctaaatt  28597900                            <------MYB46(1)                            <------MYB83                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <---------WOX13(1)                        --------->ATHB12                                         --------->ANAC46                       <---------YAB1                                       --------->ARR11(3)                   <---------ARR11(3)                                       --------->GLK1(2)                   --------->ARR11(3)                                       <---------ARR11(3)      -   gtagggaaaccaaaattttaaaatcttgattggtatgaaaataagtttttggaaaacaaaaaccaaaaactcttacaaaatctacaaaacattcaattca  28598000                                                                                <------------CBF                                                                              <---------AHL20(2)                         --------->DAG2                               <---------AtMYB61            <-                        ---------->DOF2               --------->CCA1(2)      <---------AHL20(2)  ----                   ----------------->AGL1            --------->ARR11(3)      --------->AHL20(2)  <---                   <-----------------AGL1            <---------ARR14(2)    <----------DOF2       <---                  --------->ZAT18          ---------->DOF2          <----------DOF2             ----- ------>TEIL ---------->DOF2             <---------YAB1            <----------DOF2            <------   tgtatccaaacttcttaaagggcccaaaaaggaagaaaacattgtgaaagaaacagatatagaaatgggcctttggtctttaaattgggcctaagccttt  28598100                                                                 --------->At4g35610     ------>NtERF2                                               <---------ZAT2 -----------CBF                                                  <---------At4g35610 ----->AHL20(2)                                       <---------AHL20(2)  ---------->DOF2 ------AHL20(2)                               <-----------RAV1(2)--------->ZAT2    <---------DAG2 ------YAB1       ----------->HVH21         *TSS   ----------->GT1     <------ZmHOX2a(1) ---->AHL20(2) --------->DAG2             <-----------ARR10   ---------->DOF2      <----------DOF2 ----DOF2     ---------->DOF2            <---------CCA1(2) <-----------HVH21  ---------->DOF2   taattgaggccttactaaaagtgacgactcacatggttgaatcaaatctcaggtagtaaattgtcaaagctgaggagaaagaaagctttttcggtctgaa  28598200                                                                 ----------->GT1                                                                <---------AtMYB61                 --------->GLK1(2)                           <---------ANAC58                 <---------ARR14(2)                          <---------DEAR3(1)                --------->GLK1(1)                            <---------ANAC46             --------->LBD16                  --------->ALFIN1 <------NtERF2            <---------LBD16                 <---------ANAC46<---------LBD16                   <------           <---------LBD16                 <---------MYB46(3)<---------ANAC58              --------->ZAT14         <---------ARR14(2)           --------->ARR11(3)<---------bZIP60(2)                <---------ETT(2)         --------->ARR14(2)  <---------HSFB2a(2)      <------ZmHOX2a(1)                    <---------ZAT18         --------->GLK1(2)   --------->HSFB2a(2)   <------ZmHOX2a(1)                  <---------At5g28300   attgaagtgcgaatcggggaatctagggtttcgagagagagataatgggtggaggaggacatggcggaggtataacttacaagggagtcactgtccacac  28598300                              <---------ANAC58 ----------->GT1                              <---------ANAC46<---------------AtSPL8                           --------->DAG2   <---------ANAC46                ------>MYB83                         ---------->DOF2    <-----------RAV1(1)             ------>MYB46(1)                      --------->LBD16    <---------MYB52(1)               <---------MYB46(2)                    <---------LBD16     <-------GAMYB                     <---------MYB59                    --------->At4g35610 <---------RAP2.6(3)              --------->ANAC55(2)                 ----------->HVH21      <-----------HVH21   --------->GLK1(1)                <-----------TGA1      <------NtERF2         <---------GLK1(1)                <-----------HVH21  <---------ZAT18       <---------YAB1  --------->ANAC46           -               --------->DEAR3(1)  --------->ZAT18<-------TEIL       <-----------HVH21<---------YAB1- ---ALFIN1  <---------ALFIN1  <---------ANAC58--------------->AtSPL8<----------DOF2<----------DOF2<--   tcccaagacttggcacaccgtcaccggaaaaggcttgtgcgccgttatgtggtacatttctgatttctctctttcacctaattcgcttttgattttggga  28598400                          --------->ANAC46                          --------->ANAC58                          --------->ANAC58                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                      <---------ARR14(2)                      --------->ARR14(2)                      <---------ARR11(3)                     <------ZmHOX2a(1)                      <---------AGP1                       <---------TOE2(3) --------->STY1(2)    --------->ARR11(3)               <---------At4g35610                   -------- ----->MYB83         <---------CCA1(2)          <---------WOX13(1)                           <------- ----->MYB46(1)  --------->STY1(2)  --------->ARR14(2) --------->At4g35610               --------->YAB1 -------MYB59------>ZmHOX2a(2)      <---------ARR14(2) ----------->RAV1(2)   --------->GLK1(2)   cctagctaatctcgatcgtagctagatctcgccatggggattttgggctaattgatcatctgaggaattttgtatatagaatccatttgaatcaaaaaat  28598500                                                         <---------ANAC46                                   ----------->GT1       <---------ANAC58                                <-------TEIL             <---------ANAC58                               <--------P          --------->ARR14(2)                            --------->MYB59        <---------ARR11(3)                <---------MYB46(3) ->AHL20(2)               <---------ATHB12         --------->ARR11(3)                --------->ATHB12 --AHL20(2)          <---------At4g35610           <---------ARR14(2)          --------->YAB1   tggatttgtcaaattagtatcggagctaatcaggtagatgttaatttgaatcagatattgcttatgtcaatttcagttcgatgagaatggttgaagaagt  28598600  Previous    Next  AGI:  At1g76200.1    Description:  similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96425.1) Range:  from: 28598144    to: 28599636    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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