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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<--
-------
<-------
GAMYB
------>
ZmHOX2a(2)
---------
--------->
ARR11(3)
<---------
ARR11(3)
<---
<------
ZmHOX2a(1)
--------->
ARR14(2)
<---
=====================
HOX2a_HOX2a
<---------
CCA1(2)
<------
--------->
HSFB2a(2)
----------->
ARR10
--------
<---------
HSFB2a(2)
<---------
At4g35610
<------
ZmHOX2a(2)
<---------
GLK1(1)
<---------
ARR11(3)
--------->
HSFC1(2)
--------->
ARR14(2)
<---------
At4g35610
---------->
DOF2
<---------
HSFC1(2)
<---------
ARR14(2)
--
MYB46(1)
<---------
LBD16
------>
ZmHOX2a(2)
----------->
GT1
--------->
At4g35610
--------->
ARR11(3)
--
MYB83
--------->
ZAT14
<----------
DOF2
--------->
ANAC58
--------->
GLK1(2)
<---------
ARR11(3)
-----
AGL3
<---------
ZAT14
<---------
DAG2
--------->
ANAC58
---------->
DOF2
--------->
ARR11(3)
<----
gttatggagctctgttctggaggagagctttttgatcgtattatcaagaaaggaagttactctgagaaagaagctgctaatatcttcagacagatcgtta
28543300
----
-------
-------
-------
---------
--------->
YAB1
--------->
GLK1(2)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
---------
RAV1(1)
--------->
MYB52(1)
<---------
ATHB12
-->
DOF5.7(2)
<---------
ANAC46
<---------
GLK1(2)
-->
GT1
<---------
YAB1
<---------
ANAC58
--------->
HSFB2a(1)
------
TOE1(3)
<---------
ANAC58
--------->
HSFC1(2)
------
TOE2(3)
<-------
GAMYB
--------------------->
WRI1
--------->
WOX13(1)
---
MYB52(1)
<-----------
GT1
<---------
ANAC58
<---------
HSFB2a(1)
->
TOE2(3)
<-----------
HVH21
--------->
ARR11(3)
<---------
HSFC1(2)
-----
DOF5.7(2)
<---------
DEAR3(1)
---------->
DOF2
<---------
ANAC58
----------->
ARR10
----
atgttgttcatgtttgtcacttcatgggcgttgttcatagagacttaaagcctgagaatttcttgcttgttagtaacgaagaagattctccaatcaaagc
28543400
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
GLK1(2)
------->
RAV1(1)
<---------
ANAC46
-->
ANAC46
<---------
MYB59
-->
ANAC58
--------->
DAG2
--------->
ANAC55(2)
-->
ANAC58
---------->
DOF2
<---------
ANAC55(2)
<---
->
DOF2
--------------------->
WRI1
------>
ZmHOX2a(1)
<---------
ANAC58
<---------
ARR11(3)
----->
MYB52(1)
----------->
GT1
<----------
DOF2
<---------
ANAC58
--------->
ARR11(3)
aacagattttggactctctgttttcatcgaagaaggtaaagtcatcctctttgattacttaacttaagtgtcttgttaactcttgtttcaaagatttgtc
28543500
---
-----
--------->
AHL20(2)
--------->
ICU4
------
--------->
DAG2
----------->
GT1
<------
---------->
DOF2
<---------
YAB1
--------->
ANAC58
<------
<----------
DOF2
--------->
TOE1(3)
--------->
ANAC58
<------
<---------
ANAC58
--------->
TOE2(3)
<------
ZmHOX2a(2)
<---------
GLK1(1)
<---------
ANAC58
--------->
ICU4
--------->
YAB1
<------
ZmHOX2a(1)
------->
TEIL
-------
DOF2
----------->
GT1
<------
ZmHOX2a(1)
<---------
ZAT6
---------->
DOF2
<---------
CCA1(2)
tttgcttttacataaagtaattagtgtgttttaggagataaaccataatgtttaaactcgtgttaggatcaagaaaaagatagcgacattgtatctccgt
28543600
--------->
MYB46(3)
<---------
At4g35610
----------->
RAV1(1)
<---------
WRKY38(1)
>>>>>>>>>>
WRKY63
--------->
ANAC58
--------->
At4g35610
<---------
At4g35610
<-----------------------
TaNAC69(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
----------->
GT1
<---------
PCF2
<---------
WRKY45
------------------------>
ANAC81
------>
ALFIN1
<---------
WRKY12
<------
ZmHOX2a(2)
---->
ALFIN1
<---------
WRKY38(1)
<---------
ARR11(3)
--------->
DAG2
-
--->
LBD16
<<<<<<<<<<
WRKY11
--------->
ARR11(3)
---------->
DOF2
<
---
ANAC58
<<<<<<<<<<
WRKY6
<---------
HSFC1(2)
--------->
DAG2
---
---
ANAC46
--------->
HSFB2a(2)
--------->
ANAC58
--------->
ANAC46
<----------
ID1
--------->
DAG2
---
ANAC58
<---------
WRKY12
<-----------
HVH21
--------->
HSFC1(2)
---------->
DOF2
---------->
DOF2
gtgggacatcaagtcaacttcgaaaacgacttgggtcaactcaagtcaacagatgtttcccacaagatcaaaaaagtgacaaaaaaaagcagaaaagcag
28543700
<---------
LBD16
<---------
AHL20(2)
<---------
ICU4
--------->
YAB1
-------->
ICU4
--------->
At4g35610
---------
ATHB12
*
TSS
--------->
ANAC46
<----------
DOF2
<---------
At4g35610
------>
GLK1(1)
<---------
YAB1
<---------
YAB1
---------->
DOF2
<---------
ZAT14
<---
aaatcattttatgggggattaat
attcttttgaacattttgattcacaccaaaatatcaaaagacttttgagactggagagctgtattagaatttgaat
a
28543800
<---------
ICU4
--------->
YAB1
<---------
ATHB12
--------->
ICU4
--------->
ANAC55(1)
--------->
ANAC46
--------->
ANAC58
----
--------->
ANAC58
<---------
ZAT14
--------->
LBD16
<---------
ANAC46
--------------->
AtSPL8
<------
MYB46(1)
<----
--------------->
AtSPL3
<------
MYB83
-----
--------->
GLK1(1)
>>>>>>>>>
GT-1
--------->
DAG2
------
YAB1
--------->
At4g35610
<---------
GLK1(1)
----------->
GT1
---------->
DOF2
tgtttgaatgcatattagctaaaactttggttctgtattttgaaatccgtacaagtaatcatcttatatggttaatatttgtaggtaaagtgtatagaga
28543900
--------->
HSFB2a(2)
--------->
LBD16
<---------
HSFB2a(2)
<---------
At4g35610
--------->
ARR11(3)
--------->
ANAC58
<---------
ANAC58
<---------
ARR11(3)
---------->
DOF2
<---------
ANAC58
<---------
At4g35610
<---------
ANAC46
<----------
DOF2
----->
CCA1(2)
--------->
At4g35610
<---------
LBD16
<---------
YAB1
-----
ARR11(3)
----------->
RAV1(2)
--------->
MYB52(1)
<-------
GAMYB
---->
ARR11(3)
------->
TEIL
--------->
REM1(1)
--------->
ANAC58
<---------
LBD16
tatagttgggagcgcatactacgttgcacctgaagttctacatcgaaactacgggaaagaaatcgatgtatggagcgcgggtgttatgctttacattctt
28544000
--------->
ANAC58
<------
MYB83
<
<------
MYB46(1)
--
----------->
ARR10
<-
<---------
AtMYB61
<-----------
RAV1(1)
<---------
LBD16
--------->
ANAC58
--
--------------->
AGL15
--------->
ANAC46
----
========================================================================================
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
At4g35610
--------->
ANAC58
<----------
ARF1
ctcagtggtgttcctccattttggggag
gtatgcaaaaaatactgaatcatctaaaattttgtaatcacatactcaacttgaagaatgttggagacatga
28544100
<------
MYB46(1)
<------
MYB83
------>
ZmHOX2a(2)
--------------->
AtSPL8
--------->
ARR11(3)
<---------------
AtSPL8
<---------
ARR11(3)
--------->
MYB59
--------->
At4g35610
---------------
AGL15
<---------
ZAT2
------->
TOE1(3)
------>
ZmHOX2a(2)
<---------
AGP1
----------------
AGL3
<------
ZmHOX2a(2)
<---------
ARR14(2)
------->
TOE2(3)
<-----------
RAV1(1)
<---------
ARR11(3)
--------->
ARR14(2)
--->
TEIL
<---------
TOE2(3)
<---------
YAB1
---------->
DOF2
===============
MADS_MADS
<---------
HSFB2a(2)
--------->
ARR11(3)
<---------
CCA1(2)
accttaatttggtactacttaatgttgtttag
agaccgagaagactatatttgaggcgatcttagaaggaaagctggatcttgaaacttctccttggcct
28544200
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AGI:
At1g76040.1
Description:
CPK29 (calcium-dependent protein kinase 29); calmodulin-dependent protein kinase/ kinase. similar to CPK15 (calcium-dependent protein kinase 15), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61964.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)
Range:
from: 28543724
to: 28545531
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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