Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 ------>ZmHOX2a(1)           ------>ZmHOX2a(2) ------>NtERF2          <---------GLK1(1)<---------RAP2.6(2)   <---------MYB46(3)     --------->At4g35610   <---------DEAR3(2)     <---------At4g35610  ====================HOX2a_HOX2a                             <------MYB46(1)                     <--  ------>ZmHOX2a(2)      <---------MYB46(3)                   <------MYB83<--------P              --- <------ZmHOX2a(2)      <--------P                         <---------MYB52(1)     --------->DOF5.7(2) -------->ARR14(2)     <-------GAMYB                  <-----------GT1 <---------LBD16             --- ---------ARR14(2)   --------->MYB59         <-----------GT1 --------->MYB59      <---------MYB52(1) --------SPL7 --------->TOE2(3)     >>>>>>>>>MYB2<---------MYB52(1)  <---------LBD16              <--   ccgatcggttcgatctccttaattcggttgctgccgaaaaccaaaattttcgtttttttcggttcggttttctcgggttgaaccgttatcccaggcctaa  28519800                                              <---------YAB1                                            <---------ICU4                                           <---------YAB1                                         <---------AHL20(2)                                        <---------AHL20(2)                                        --------->AHL20(2)                                     --------->AHL20(2)        --------->TOE2(3)                                    <---------AHL20(2)       <-----------GT1                                 --------->AHL20(2)          <---------AHL20(2)                                 <---------ARR11(3)     <---------YAB1           --------->AHL20(2)                                 --------->ARR11(3)     <---------TOE2(3)        <---------AHL20(2)              <---------WRKY18(1)<---------AHL20(1)    --------->YAB1          --------->YAB1 -------AHL20(1)                 --------->AHL20(1)    --------->AHL20(2)    --------->AHL20(2) ------>AHL20(1)                --------->CCA1(2)      <---------AHL20(2)   --------->YAB1 ------>ARR11(3)               --------->ARR11(3)    --------->AHL20(2)--------->AHL20(2)           < -------AHL20(2)             --------->MYB59--------->YAB1--------->YAB1   --------->AHL20(2)       -   aatattgtatgactcttgaccaaaaactagttagatatattatttattatgacatattaatattaacttaatataaaataaaaataaatgttcaaaaaac  28519900                                                    <----------DOF2                    --------->At4g35610                 <---------At4g35610            --------->At5g28300                    <---------At4g35610              ---------->DOF2                  ----------->GT1                   --------->ATHB51          ----------->HVH21                 ------>ZmHOX2a(1)                    --------->YAB1        --------->At4g35610          <---------ANAC55(2)                         <---------ICU4        <---------At4g35610          --------->ANAC55(2)            --------------->AGL15     ---------->DOF2                <---------ICU4  <---------YAB1  <---------DAG2     --------->ZAT2  ------>ZmHOX2a(2)        <---------WOX13(1)--------->SPL7         <----------DOF2    <---------ZAT2 ---------ARR11(3)       --------->ATHB12  <---------SPL7        <-----------GT1--------->ICU4------- -------->ARR11(3)      <---------YAB1     --------->TOE2(2)  <----------DOF2   <---------ATHB51    -   atgatcttaaagctgacaaagctgatttgattgactaatacttatcctacggtgatttttggttcttttactttttttgacaattatggagctggatgga  28520000                                   ----------->GT1                              --------->YAB1                      --------->AHL20(2)                   --------->AHL20(2)                   --------->AHL20(1)                --------->YAB1-------->HAHB4            <---------AHL20(2)<---------ICU4      --------->AHL20(2)     --------->ICU4                      --------->AHL20(2)     <---------AHL20(1)    --------->YAB1                      ----------->GT1     --------->AHL20(1)  <---------YAB1                      ---------->DOF2      >>>>>>>>>>GT-3b    --------->AHL20(2)<---------AHL20(2)                   <------ZmHOX2a(2) ---------->DOF2  --------->AHL20(2)  <---------YAB1                 --------->MYB52(1)    <---------HSFB2a(2)      < ---->GT1  --------->AHL20(2)<---------ATHB51      <---------AHL20(2)      --------->HSFB2a(2)     -- -------->AHL20(2) <---------AHL20(1)              --------->AHL20(2) <---------ICU4              <--   aaaaaaatatatataaaatcatatattattaataatgagataaatacaacgaattaaacggatcaaagttaatatttccaaaagaaaaatagaacagagt  28520100                                                  --------->ATHB12                                                <---------WOX13(1)        <---------AHL20(2)                     <------------CBF        --------->AHL20(2)                    <------ZmHOX2a(1)      --------->TOE2(3)                      <---------YAB1        --------->HSFB2a(2)          <---- ---------ICU4                    <---------AHL20(2)               <---------HSFB2a(2)         ------ ---->ZmHOX2a(1)                 --------->AHL20(2)             <----------DOF2               <------ -------MYB59      <------------CBF    ------------>CBF     <<<<<<<<<<GT-3b           ------------>CBF   cctaatttcattaatttcaactattgaaaacaaaatttaaaatcaataggattgatttctatttttcttttagaaaaacaaaatttgaaacaatttccta  28520200                                 ------>MYB46(1)                                 ------>MYB83                       --------->MYB46(3)                                    <---------CCA1(2)                     <-----------GT1   --------->YAB1                       ------->TEIL                    <-----------GT1   <---------YAB1                     --------->ANAC58         --------->TOE1(2)     --------->DREB2C(2)                       --------->ANAC58 -----ICU4      <---------DAG2--------->DEAR3(2)                       --------->CCA1(2)    --------- >ZmHOX2a(1)    <----------DOF2------->GAMYB                   <---------AHL20(2)      <---------AHL20(2) ---MYB59*TSS   --------------------->WRI1     <---------TOE2(3)---------->DOF2  <----------DOF2   atttccctaaacttgcgactttttaacaatcgaccgacttatcaaaattagggattgttttatatataaagagagacgcatctctttatttcattcatcg  28520300                                         --------->ARR11(3)                                         <---------ARR11(3)                         --------->ARR14(2)                               --------->ARR14(2)                         <---------ARR14(2)                      <---------HSFB2a(2)                - >YAB1          ---------->DOF2  <---------CCA1(2)               --------->HSFB2a(2)                <   cttctccaaaattttcttcaaagaacaaatctcccaaatctaaaatctttctcttctctcttcgtttccataaccatgtctgcgaagaagattgtgttga  28520400                                     ------>NtERF2                                     <---------MYB46(3)                                     --------->ABI4(2)                                    <---------DEAR3(1)                                    --------->ALFIN1                                   <-------GAMYB                                   <------NtERF2                                  <---------DEAR4(2)                                  <---------ORA47(2)                                  <---------ATERF1(1)                                  <---------MYB46(3)                                 --------->ALFIN1                                 <---------DREB2C(2)                                 <---------DEAR3(1)                                --------->ATERF1(1)                                <---------ABI4(1)                                              ------                                <------NtERF2                    ------->MYC3               ------->GAMYB             --------->GLK1(2)<---------DEAR3(1)                 <-------MYC3               =========             ------->TEIL     --------->ALFIN1                 <---------ARR14(2)        --------->MYB52(1)         <---------------------WRI1--------->ATERF1(1)      <---------ANAC46             xxxxxxxxxxxx        ----------->GT1      <------ZmHOX2a(1)         --------->TOE1(3)             <---------ETT(2) -------->GLK1(1)       --------->ALFIN1               --------->TOE2(3)             --------->ETT(2) ---------GLK1(1)    <---------TOE2(3)<------NtERF2 --------->ANAC46              <---------ANAC46   agagttccgatggtgaatctttcgaggttgaggaggcggtggctctcgagtcacaaaccatagcgcatatggttgaagacgactgcgtcgacaacggagt  28520500                      <-----------ARR10                      --------->ARR14(2)                      --------->ARR11(3)                      <---------ARR14(2)                      <---------ARR11(3)                      --------->ARR14(3)                      <---------GLK1(2)                --------->ANAC58          <-----------TGA1          <-----------HVH21         --------->ANAC58         --------->O2 <---------ARR14(3)         --------->TGA1a   --------->ANAC46                        --------->ZAT2         <---------TGA1a------>ZmHOX2a(2)                          --------->At4g35610         --------->ANAC46  --------->ANAC58                        <---------At4g35610         --------->bZIP60(1)                                       <---------ZAT2                   <         --------->ANAC58  --------->ANAC58               <-----------HVH21                      ----         <---------bZIP60(1)                              ------->PIF5                           <---         <---------O2 --------->AGP1                      <-------PIF5                           <---       --------->MYB52(1) ------>ZmHOX2a(1)              <---------O2                           -----      =========================HOX2a_HOX2a               --------->TGA1a                 <------NtERF2      ------>ZmHOX2a(1)<------ZmHOX2a(2)                 <---------TGA1a                <-----------HVH21      ========================HOX2a_HOX2a                --------->ANAC58               <---------RAP2.6(3) --->GLK1(1)    --------->ANAC58                         --------->ANAC58         <------NtERF2------ ==================MYC_MYB====================HOX2a_HOX2a--------->O2             <---------ATERF1(1) xxxx>smallRNA(s)   ----------->ARR10  ------>ZmHOX2a(2)<-------TEIL  ------>NtERF2  ------>NtERF2  -   ccctcttcctaacgtcacgagcaagatcctcgccaaggtgatcgagtattgcaagaggcacgtcgaggctgctgcctctaaggccgaggccgtcgagggt  28520600                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)         <---------At4g35610         --------->At4g35610     --------->TOE2(2)                                  --------->ANAC58 ---------At4g35610                                     --------->ANAC58 ----->At4g35610<---------ARR11(3)                      --------->ANAC46 ------ZAT2     <---------ARR14(2)               <------ZmHOX2a(2) ------At4g35610--------->ARR14(2)              <---------ARR11(3)                                <-- ---->ALFIN1    --------->ARR11(3)      <---------AHL20(2)                                        <-- --->ZAT18 ----------->HVH21     <---------At4g35610 <------ZmHOX2a(2)                            --- -------->At4g35610          ----------->HVH21  --------->ARR11(3)<----------DOF2<---------MYB52(1) -   gctgctacctccgatgacgatcttaaggcctgggacgctgattttatgaagatcgatcaagctactctctttgaactcattctggtatgtttcttctctc  28520700  Previous    Next  AGI:  At1g75950.1    Description:  SKP1 (ARABIDOPSIS SKP1 HOMOLOGUE); ubiquitin-protein ligase. Identical to SKP1-like protein 1A (SKP1A) [Arabidopsis Thaliana] (GB:Q39255;GB:P92992); similar to ASK2 (ARABIDOPSIS SKP1-LIKE 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G42190.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component, POZ; (InterPro:IPR016073); contains InterPro domain SKP1 component; (InterPro:IPR001232); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897); contains InterPro domain SKP1 componen Range:  from: 28520209    to: 28521360    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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