Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->LBD16                                                             ------>MYB46(1)                                                           <---------MYB59                          --------->bZIP60(1)             --------->HSFC1(2)             --------->AHL20(1)           --------->YAB1  <---------HSFB2a(1)             <---------AHL20(2)    <---------MYB46(3)     --------->HSFB2a(1)             <---------AHL20(1)<---------YAB1<-----------GT1 ------>MYB83                         <--             --------->AHL20(2)--------->ANAC58   ------>MYB83  ------>ZmHOX2a(1)      <---------ZAT18 -----ARR11(3)     <---------At5g28300   <---------YAB1   <---------HSFC1(2)           --------->ZAT18 ---->ARR11(3)    <-----------GT1  --------->MYB52(2)--------------->AtSPL8           <---------ANAC58 ---TOE2(3) --------->AHL20(2) --------->ANAC58   ------>MYB46(1)                     <---------ANAC58   taatgaaattagaaataaatttaccttggcatcacgatagttgatgataaccttcccagtaccttcctgaagaacaactctagcgattgcgcacttacgt  28162600                                        --------->HSFC1(2)                                        <---------HSFC1(2)                                       --------->ANAC58                                       --------->ANAC58                                   --------->HSFB2a(2)                                  <---------LBD16                                  --------->HSFB2a(2)   <---------CCA1(2)                                 <---------LBD16    <---------ANAC46                                ------>ZmHOX2a(1)   <---------ANAC58                             ----                            <---------ARR14(2)      --------->ANAC55(2)                      <-------                            --------->ARR14(2)      <---------ANAC58                     --------->ALFIN1                     --------->At4g35610<---------HSFB2a(1)                            --------->LBD16                     <---------At4g35610--------->HSFB2a(1)                          <---------LBD16                ----------->RAV1(2)--------->LBD16 ---------->ID1                   ------>ZmHOX2a(1)           --------->YAB1  --------->GLK1(1)       <---------TOE2(3)             ------>ZmHOX2a(1) <-          <---------ATHB12 <---------GLK1(1)     ----------->HVH21              <---------ALFIN1 <--- -------SPL7    --------->At4g35610<---------HSFB2a(2) ------->TEIL           ------>ZmHOX2a(1) -----   cgtccagtgccaataatcttctgagcagcaaatcctccgggaagcctcgatttgacgtatttcttcagttcaactatctcctcctcctccggtggagcag  28162700         ----------->HVH21        --------->At5g28300        <------NtERF2      <---------DEAR3(1)             <---------GLK1(1)      <---------DREB2C(2)            --------->GLK1(1)      <---------ANAC46              <---------ARR14(2)     <---------ABI4(1)              <-----------ARR10     <------NtERF2                  --------->ARR14(2)   --------->ALFIN1             <---------LBD16   <---------DEAR3(1)          --------->ALFIN1                       <------NtERF2 <---------ANAC58            <---------ANAC58         --------->ARR14(2) <---------ANAC58            <---------ANAC46         <---------ARR14(2)                     <------- <---------ANAC46            <---------ANAC58  ---------->DOF2       --------->LBD16      <---------ARR11(3) ----->ARR14(2)             ------>NtERF2  --------->ATERF1(2)      --------->ALFIN1      --------->ARR11(3) --At4g35610<---------WOX13(1)<---------SPL7 <---------MYB52(1)    <---------LBD16       <------MYB83 --------At5g28300          <------NtERF2  <---------ATERF1(2)   <---------LBD16         <------MYB46(1) ------ARR14(2)           <---------DEAR3(1)--------->LBD16  <---------ARR14(2)         --------->MYB59 ---->At4g35610          <---------LBD16  <---------LBD16    --------->ARR14(2)     <---------ZAT6<xx   ataccgtggcggtgatagatagagaagcgcggcgtgcggatttcgccggtaatgcgaatactgaattcgcgcgggggaaggaaatggtgttaggtctttg  28162800                                                                <---------At4g35610                                                                --------->At4g35610               ---                                                       ------>NtERF2                              ---                      <---------ZAT14                 --------->ANAC46                    ---------->DOF2   --------->TOE1(2)  --------->ZAT14                 --------->ANAC58          --------->MYB52(1)<-- ---DOF2  <------ZmHOX2a(1)                           --------->ANAC58        --------->ARR11(3)  <-- xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <-------TEIL    <-----------RAV1(1) <---------DOF5.7(2)   agaaacttgggaggagaacgagagtgaagagagagaagaggcgaggttcgtaatcgacgccattgtcgctgaacgaagaagataacgtcgagcaaagtga  28162900                <-------GAMYB               <---------ANAC58           <---------HSFB2a(1)           <---------HSFC1(2)           --------->HSFC1(2)         <------ZmHOX2a(1)      <-----------RAV1(2)      <---------LBD16   <---------At4g35610   --------->ZAT2   <---------ZAT2            ---------->DOF2   --------->At4g35610  ----------->GT1                                   --------->PCF2 ------>At4g35610      ----------->GT1                  --------->ICU4    --------->PCF5 ------>ZAT2   <---------ANAC46                --------->ZAT2          --------->ANAC58      <------- -------At4g35610 --------->WRKY12        --------->MYB52(1)      --------->MYB59   <----------DOF2 -------ZAT2   <---------ANAC58         --------->ARR11(3)     *TSS    --------->ANAC58    --------->At4g35610   agctgagctcaggagtttcgttgaacaggtaaaaaggaagaagataacgagcagagtgaagatgagattaggcacggtccctctcgcttcatgagctttc  28163000                                                                                      ----------->GT1                                                                                     <-------TEIL                                                                                    --------->ARR14(1)                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                                                                                   <---------GLK1(2)                                                                                   --------->ARR11(1)                                       <------------CBF                          ----------->ARR10                                      --------->ATHB12                         --------->REM1(2)                                   --------->TOE2(3)                        <---------ANAC46   <------------CBF         --------->AHL20(2)                        --------->ARR14(2)   <---------ANAC55(2) ---DOF2           ---------->DOF2 --------->TOE1(3)                  <---------ARR14(2)<---------MYB52(1)   caacttattgaatcggcccattagagcccattaaaaaccttcattgggcttaacaaggagcttgaaaacacaaatactctgtgtagattcgttacatatg  28163100                                       --------->ATHB12                                       <---------ICU4                                      <---------YAB1                                    --------->bZIP60(1)                                    <---------bZIP60(1)  <-----------GT1                               --------->ANAC46      <---------AHL20(2)                         <----                               --------->REM1(1)  ----------->GT1              --------->ANAC46------             ----------->GT1 <-----------GT1<---------YAB1         <----------DOF2     <-----------GT1   ttaacaaaaacaaaatggtcaaaacaaaaatttacatcacatcattgtcatttagttaatttccatgttcttttgccatctactccaaattacacgatta  28163200                                           <------ZmHOX2a(2)                                          --------->ARR11(3)                                          <---------ARR11(3)                                 --------->AHL20(2)   --------->YAB1                       --------->ANAC58                                 --------->AHL20(1)  <---------YAB1                        --------->ANAC58                                 <---------AHL20(1)--------------->AGL15            <---------REM1(1)                 --------->At4g35610   <---------TOE2(3)                          <---------At4g35610         --------->AHL20(2)   --------->YAB1       <---------------AGL15          --------->At4g35610       <----------DOF2     --------->YAB1--------->YAB1         --------->YAB1 --------->At4g35610 -----AHL20(2)   <---------At4g35610   <---------TOE1(3) --------->YAB1   --------->WOX13(1) --->AHL20(2) <-------TEIL--------->ICU4 <------ZmHOX2a(1)     <-------TEIL    <---------At4g35610   aatgtgaagctttaaattcatctgtgcgataatcatatattaaggatcatatactataatcagcattcatgttgatcaatctgcagatgtagcacgagaa  28163300                                                               --------->AHL20(1)                                                               --------->AHL20(2)                                                      --------->At4g35610                                                  --------->ANAC58                                                  --------->ANAC58              --------->DAG2                   ---------->DOF2         <---------ICU4      <---------AHL20(2)               -----                <-----------GT1        --------->AHL20(2)<-------TEIL          ---------->DOF2  <----        <---------YAB1               --------->GLK1(2)<---------At4g35610  ----------->GT1    -------     ----------->TGA1       --------->ATHB12      --------->ANAC46    --------->YAB1         <-------   caagcttatgacgatttttcacaaagcggaagattggagaatcaaatattacaagcagatgcaaattttttataagaatgtaaaagtagctctaaacatt  28163400                                                                                    <---------ARR11(3)                                   -------->HAHB4                                   <---------GLK1(2) ---->AHL20(2)                     --------->YAB1                                   --------->ARR11(3) -----AHL20(2)                    <---------YAB1                          <-------TEIL  <----------DOF2 -->TOE2(3)                     --------->YAB1                          <---------GLK1(2) --ICU4                     <<<<<<<<<EIN3                    --------->MYB52(1) ---------->DOF2  <---   aattgtcaaaataacaaaaatcgtagacaatgtataataatagtttcaaaaacattgtcaaaaaaacagactcagattcatcaaaagatactttccatta  28163500  Previous    Next  AGI:  At1g74970.1    Description:  RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome. Identical to 30S ribosomal protein S9, chloroplast precursor (RPS9) [Arabidopsis Thaliana] (GB:Q9XJ27); similar to ribosomal protein S9 family protein [Arabidopsis thaliana] (TAIR:AT3G49080.1); similar to unknown [Populus trichocarpa] (GB:ABK93554.1); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721) Range:  from: 28161191    to: 28162963    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g74990.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G19310.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79067.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 28163376    to: 28164148    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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