Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <-----------GT1                                                         <-----         --------->ALFIN1                                                                      <----- ----->ZmHOX2a(1)   --------->CCA1(2)                                                  <---------ANAC58 ->AHL20(2)       <------ZmHOX2a(1)                    <---------At4g35610             <---------ANAC58 --AHL20(2)      ----------->GT1                   --------->HSFB2a(2)                 <---------ANAC46 >AHL20(2)    ---------->DOF2  <-----------GT1     <---------HSFB2a(2)  <---------At4g35610   -------   tcctaattcgagtgggaaaaggatataactaattaacccttctcggtacaattcgagagctactgctccaattcatcggctattaagttgcttcgatata  28033800                                                            --------->ANAC46                                                      <-------GAMYB                                                     <---------MYB46(3)                                                     <------MYB46(1)                                                     ----------->GT1                                                     <------MYB83                                              <---------ANAC58                                      <     <---------SPL7               ------->TEIL<---------ANAC58      <------ZmHOX2a(2)    ----------->GT1   <---------TOE1(2)      <------ZmHOX2a(1)   <---------ANAC46  --------->ANAC58       <---------ANAC46 ----AHL20(2)          <------ZmHOX2a(1)      <---------AtLEC2  --------->ANAC58       <---------ANAC58 ----YAB1            --------->ALFIN1        <<<<<<<<<<ABI3 --------->ANAC58           <---------ANAC58 -->AHL20(2)        <------ZmHOX2a(1)        <<<<<<<<<<FUS3 --------->ANAC58      <------------CBF  -   attcgaacgtatggacgatggaggaggaggagaatgaatgtgtgatttgcatggatggttacacacaaggatcaatagtggctaaattgccttgtgaata  28033900                        --------->MYB52(1)                     --------->YAB1                     --------->AtLEC2         --------->GLK1(2) ------->GAMYB         <------------CBF ---------ZAT6<---------MYB52(1) --------->AHL20(2)<-----------GT1    --------->ANAC46        <------ ---------->GT1     <---------YAB1         <-----------GT1   <------------CBF        <---------YAB1   tacagttaaacattctgttattttgataacggaaattatacaaaattactaaattgccatccaaattgaaacacaaaactataaaacatgagtgtccctt  28034000                                               <---------GLK1(1)                  --------->ARR11(3)                                         <----------DOF2             ---------->DOF2           <-----                                   <----------DOF2      ----------->GT1  ---------->DOF2 <----------DOF2   <---------ARR14(2)          <---------ZAT18<---------GLK1(2)<----------ID1     <---------ARR11(3) ---ANAC46          --------->YAB1 <---------DAG2<-----------GT1----------->RAV1(1)  <----------DOF2   gtgccgatttcgaatgtctcattcatcatcttgttcactttttctttggattttcgatttgtaaaacaacaaaaagaaagatgagttctttcttttttca  28034100                                          --------->YAB1                                         --------->AHL20(2)                                  <---------YAB1        <---------TOE2(3)----------->RAV1(2)        <---------TOE1(3)<---------At4g35610                 <---------AHL20(2)  <---------AHL20(2)     --------->At4g35610 <---------ICU4<---------AHL20(2)     <---------YAB1  --------->AHL20(2)<----------DOF2--------->YAB1   <---------ZAT2       ----------->HVH21     <----- ----LBD16        --------->At4g35610<---------YAB1 <---------At4g35610  ----------->TGA1    <-------   gggtttaattagggtttatgagctttcatctggattatgataaataaaaattccagcttatattttttttggtttgtgacgatgactatagcaattcacc  28034200                                                                              <---------REM1(2)                                                                            --------->ETT(2)                                                                            <---------ETT(2)                                                                            ----------->HVH21                                                                           <------NtERF2                                                                           --------->ATERF1(1)                                                                          ------>NtERF2                          <---------ARR11(3)                              <---------ATERF1(1)                          --------->ARR11(3)                          --------->ANAC46                        --------->ANAC58                         <---------AHL20(2)                        --------->ANAC58         <-------TEIL   <---------AHL20(2)                  --------->At4g35610<----------DOF2   <---------ANAC58  --------->DEAR3(1)  --------            ------>ZmHOX2a(1)     --------->ARR11(3)   <---------ANAC58  <---------DEAR3(1)  <------- ----YAB1  <XXXXXXXXXXXXXXXXXXXXMIR780.1  --------->ZAT6        --------->AHL20(2)  <---------GLK1(2) ----GT1   --------->TOE2(3)      <---------ARR11(3)   <---------ANAC46  <---------ANAC46<-----------GT1   attgtctctctctccttaatagctgcaagaacttaagagctttaacacaaatacatggcttgtttattaaatacggcgtcgacactgattcttacttcac  28034300                                             <---------SPL7                                            <---------DAG2                                       <----------DOF2                                <---------ANAC58                                       <---------DAG2                                 <---------ANAC46                                 --------->ANAC46                                     <---------ANAC58                                 ----------->HVH21                             ----------->RAV1(2)                              <---------ARR14(2)                              ------->TEIL                              --------->ARR14(2)                         ----------->RAV1(2) ->ZAT14               --------->GLK1(1) <-----------GT1 <---------CCA1(2) ------>ZmHOX2a(1) --ZAT14   ------>ZmHOX2a(1) <---------CCA1(2) --------->SPL7            <---------LBD16           <-   tggaaaacttatcctacattgtgcgatttctatatccgacgctttaccttacgctcgtcgtctcttgctctgttttcctgaacctgatgcgtttatgttc  28034400                                                 <---------ANAC46                          --------->ARR14(2)                                   --------->LBD16                                         <---------ARR14(2)                                  --------->DEAR3(1)     <-------GAMYB                   --------->LBD16                                  --------->RAP2.3(2)   <---------MYB46(3)              <---------HSFB2a(2)                                  --------->RAP2.6(2)<---------MYB46(3)                <---------LBD16                                 --------------->AtSPL3 --------->MYB52(2)          <----------DOF2         <---------TOE1(1)      --------->At4g35610 --------->ALFIN1            <---------ANAC58         <---------TOE2(1)  <----------CDC5  <-------GAMYB                --------->DAG2<---------ANAC46      <-----------HVH21    --------->At4g35610<---------MYB52(1)       <------ZmHOX2a(1)--------->HSFB2a(2)      <---------SPL7   --------->ARR14(2)   <---------ANAC58     --------->YAB1 <---------ANAC58 --------ALFIN1        <---------ARR14(2)   <---------ANAC58    --------->ICU4  <---------ANAC46   aacactctcgtccgaggctactctgaatccgatgagccgcacaattccgttgcggtgtttgttgaaatgatgaggaaaggtttcgtctttccggatagtt  28034500                                  <---------LBD16                                --------->ARR14(2)                                <---------ARR14(2)                               <---------GLK1(1)                        --------->ALFIN1                       --------->ATERF1(1)                       <------NtERF2                       <-------GAMYB--------->LBD16                      <---------ORA47(2)                     <-------TEIL                      <---------MYB46(3)                  <---------At4g35610         <---------ANAC58                     --------->ALFIN1<---------MYB52(1)   --------->At4g35610         <---------ANAC58                     <---------DREB2C(2)      --------->ARR11(3)         <----------DOF2  ------>ZmHOX2a(1)  <---------DEAR3(1) <----------DOF2 <-----------RAV1(2) ---------->DOF2   tctccttcgcgtttgtcatcaaggcggtggagaatttccggtctttaagaactgggtttcagatgcattgtcaagctttaaagcatgggcttgagtcgca  28034600                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                               <-----                                                                                              <------                    <---------WOX13(1)                                                        <------                  --------->ATHB12                                                            <------               --------->TOE2(3)                                                             <------MYB46(1)               --------------->AGL15                      --------->ANAC46                   <------MYB83              <-----------------AGL1          --------->REM1(2)                              <-------            <---------ALFIN1                  <-------GAMYB                              <---------ARR14(2)    <-------GAMYB<---------YAB1              --------->ALFIN1    --------->ALFIN1        --------->ARR14(2)   --------->MYB111(2)                   <---------ANAC58 --------->ANAC58            ------->GAMYB   --------->MYB52(2)                    <---------ANAC58 --------->ANAC58            <---------MYB59   <---------MYB46(3) <------MYB83     --------->ALFIN1 <---------ANAC58          --------->MYB46(3)   --------->MYB55(2) <------MYB46(1)--------->ALFIN1   <---------ANAC58      <-------TEIL  ---------   tttgtttgttggcactaccttgattggtatgtatgggggatgtgggtgtgttgagtttgctcgcaaggtgttcgatgaaatgcatcaaccgaatttggtt  28034700  Previous    Next  AGI:  At1g74630.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64554.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 28034182    to: 28036113    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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