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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<---------
AHL20(1)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AHL20(2)
<---------
AHL20(1)
----
<---------
YAB1
--------->
AHL20(1)
----------->
GT1
--------->
AHL20(2)
---->
AHL20(2)
<---------
CCA1(2)
--------->
AHL20(1)
<---------
YAB1
<---------
AHL20(2)
-----
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
<----------
ID1
<---------
AHL20(2)
-----
AHL20(1)
--------->
ARR11(3)
--------->
AHL20(2)
---------->
DOF2
<----------
DOF2
-
AHL20(2)
<---------
AtLEC2
<----------
DOF2
<---------
ARR11(3)
--------->
AHL20(2)
<---------
AHL20(2)
tattttgaactatgtttggatggagaacttatagctttgaaaaatatattcaatattttta
gaaaaaaaagaaaaaaatactatagctttaattttatat
27400500
--------->
AHL20(2)
<------
--------->
ANAC55(2)
<-------
<---------
ANAC55(2)
<-----------
GT1
--------
<------
MYB83
<---------
AHL20(2)
<-------
<------
MYB46(1)
--------->
AHL20(2)
<----------
DOF2
--------->
ANAC58
<---------
AHL20(2)
<----------
DOF2
<---------
ALFIN1
--------->
ANAC46
<---------
YAB1
<---------
WOX13(1)
--------->
ANAC58
--------->
ANAC58
--------->
YAB1
<---------
YAB1
--------->
AHL20(2)
--------->
ANAC58
----->
YAB1
--------->
ATHB12
--------->
AHL20(2)
<---------
DAG2
<-----------
GT1
---------
catcaaacaagaaacaaattgataggtatttataaatatttaatttgattaactcaactttttaatacacagccaattgaaaccccacttctttgccttt
27400600
-----
<-------
--------
<-------
<-------
---------
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
--------->
AHL20(2)
<---------
ANAC55(2)
--------->
ATHB51
--------->
AHL20(2)
--------->
ANAC55(2)
<---------
ICU4
<---------
AHL20(2)
<-------
TEIL
<---------
AHL20(2)
----
DOF2
<---------
DAG2
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
--------
AGL15
<-----------
GT1
--------->
AHL20(2)
<---------
ATHB51
------->
AGL15
---------->
ID1
<---------
AHL20(1)
--------->
YAB1
<----
--
DAG2
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(1)
--------->
YAB1
--------
-------->
AGL1
<-----------
GT1
<---------
TOE2(3)
--------->
ZAT6
<---------
AHL20(2)
<--------
ATHB1
-
tttagtcgattccacttttttttcccttctaaattaatgaaaaaactttgttaacaataaaatacataattaaaaaaacatttgtaataatttaataatt
27400700
<------
NtERF2
XXXXXXXXXXXXXXXXXXXX>
MIR418
--------->
RAP2.6(2)
--------->
bZIP60(2)
<---------
ANAC46
--------->
TGA1a
--------->
ATERF1(2)
--------->
O2
<------
<---------
ATERF1(2)
--------->
ANAC58
<---------
TGA1a
-------
--------->
YAB1
<---------
ANAC58
--------->
MYB52(1)
-------
--------->
AHL20(2)
<---------
ANAC55(2)
------>
MYB46(1)
--------
---->
AHL20(2)
<---------
RAP2.6(2)
--------->
ANAC58
------>
MYB83
----------->
TGA1
-
ATHB1
--------->
AHL20(2)
--------->
ANAC55(2)
<---------
MYB59
----------->
HVH21
->
AHL20(2)
--------->
AHL20(2)
<---------
ANAC46
<-----------
GT1
<---------
O2
<-------
--
AHL20(2)
<---------
AHL20(2)
----------->
GT1
--------->
ANAC55(2)
--------->
ANAC46
--------->
AtMYB61
--
ICU4
--------->
AHL20(1)
<---------
ANAC58
========================================
bZIP_DOF
>
ICU4
--------->
YAB1
------>
NtERF2
--------->
ANAC46
--------->
YAB1
------->
GAMYB
--------->
MYB46(3)
-----
AHL20(2)
<---------
DEAR3(1)
=================================================
bZIP_DOF
-
->
ATHB51
--------->
YAB1
<-----------
RAV1(1)
<----------
DOF2
--------->
TOE2(3)
------->
TEIL
-------->
YAB1
--------->
RAP2.6(3)
---------->
DOF2
<---------
AHL20(2)
===============
MYC_MYB
<
tatcaaaaaaataataatatggcggcaatgttgcgttacaaaaacgccatcttttatgtaattgtaacctaataacagcaacgtgacgatgaaccaccac
27400800
<---------
ARR11(3)
--------->
ARR11(3)
<---------
CCA1(2)
<---------
ANAC58
----------->
TBP
<---------
ANAC58
------>
MYB83
<---------
ANAC46
<---------
MYB59
---
ALFIN1
<----------
DOF2
--------->
AHL20(2)
-->
AtMYB61
<---------
ARR11(3)
--------->
AHL20(1)
<------------
CBF
-->
DEAR3(1)
--------->
ARR11(3)
<---------
AHL20(1)
<---------
ANAC58
---------->
DOF2
->
MYB46(3)
<---------
CCA1(2)
------>
MYB46(1)
<---------
ANAC46
--------->
HSFB2a(2)
--
MYB55(2)
--------->
ANAC58
--------->
TOE2(3)
<---------
ANAC58
<---------
HSFB2a(2)
<-
-------->
ZAT2
--------->
ANAC58
<-----------
GT1
------->
GAMYB
*
TSS
--------->
TOE1(3)
---------
ZAT2
--------->
ANAC46
--------->
ANAC55(2)
--------->
TOE2(3)
<---------
YAB1
--------->
TOE2(3)
cgagttgcgttagaaaaacgccatatatcttttatgtaacctaatatatatatcttaaacaacaggcttggattatt
gtctctcgaaaacctaaaatcgc
27400900
----------->
RAV1(2)
--------->
AtMYB61
============================
RAV
----------->
RAV1(1)
--------->
YAB1
------->
GAMYB
--------->
ARR14(2)
-------->
P
<---------
ARR14(2)
--------->
LBD16
<---------
At4g35610
<--------
--------->
ANAC46
<---------
ZAT2
<--------
--------->
ANAC58
--------->
ZAT2
==============
--------->
ANAC58
--------->
At4g35610
---------->
DOF2
<---------
LBD16
<---------
At4g35610
<----------
ID1
--------->
ANAC58
=========================================
--------->
STY1(2)
---------->
DOF2
--------->
ATHB12
<
<---------
ANAC58
<---------
STY1(2)
<---------
REM1(1)
--------->
ICU4
---------
<---------
ANAC58
--------->
ANAC58
================================================
<----------
DOF2
<---------
AtLEC2
--------->
ANAC58
--------->
At4g35610
<---------
YAB1
<--------
---------
DOF2
<---------
At4g35610
--------->
ANAC58
--------->
MYB46(3)
------>
ZmHOX2a(1)
---------
tctttctcttttcttgtcatcttctcc
atggctgagtctagcaagttatccgcaaccacagttgaagcagctcctgctatgattaaggccaaagacgtga
27401000
<---------
ARR14(2)
--------->
GLK1(2)
---------->
DOF2
<---------
HSFB2a(2)
--------->
ANAC58
-
TGA1a
--------->
HSFB2a(2)
--------->
ARR11(3)
-
ANAC55(2)
--------->
GLK1(1)
=
bZIP_DOF
--------->
GLK1(2)
<---------
ANAC55(2)
=
bZIP_DOF
--------->
ARR14(2)
--------->
ANAC58
-----------
GT1
<---------
ARR14(2)
--------->
ANAC46
<---------
ARR14(2)
>
ANAC55(2)
<-----------
ARR10
<------
ZmHOX2a(2)
--------->
ARR14(2)
=
MYC_MYB
<---------
GLK1(2)
<---------
ARR11(3)
--------->
TOE2(3)
<---------
YAB1
-
O2
--------->
LBD16
<---------
GLK1(1)
----------->
GT1
===========================
>
O2
------>
ZmHOX2a(1)
----------->
HVH21
--------->
ARR14(2)
<------
ZmHOX2a(1)
---
tttctccttccgagaaggaagaatctgatcagacggagatcacgaaagtatccgtcttgaaaaaccttgatgagaaggagatgatcaaagaattcgctga
27401100
--------->
HSFB2a(1)
<---------
HSFC1(2)
<---------
HSFB2a(1)
<---------
MYB46(3)
--------->
GLK1(1)
--------->
ARR14(2)
<---------
LBD16
--------->
DAG2
--------->
ARR14(2)
<---------
ARR14(2)
<XXXXXXXXXXXXXXXXXXXX
MIR169G*
<---------
MYB46(3)
--------->
ARR14(2)
--------->
ANAC58
<---------
LBD16
---------->
DOF2
--------->
HSFC1(2)
--------->
HSFB2a(2)
---------->
DOF2
---------->
DOF2
<-----------
ARR10
<---------
HSFB2a(2)
<------
MYB46(1)
<-----------
RAV1(1)
--------->
CCA1(2)
<---------
At4g35610
<---------
ARR14(2)
<---------
ARR14(2)
<------
NtERF2
<---------
At4g35610
====
HOX2a_HOX2a
---------->
DOF2
----------->
GT1
--------->
GLK1(1)
<---------
ANAC46
--------->
At4g35610
--->
ZmHOX2a(2)
--------->
ANAC58
<------
MYB83
<------
NtERF2
<---------
ATHB12
<------
ZmHOX2a(1)
-------
tcgtcttcagcgtctcgaagcaaaggtggatttgttggtaacaaaggcggatttgttggcaataaaggcggatatacaggagcttctcatctcagccaag
27401200
--------
------>
ZmHOX2a(1)
<-------
--------->
ARR11(3)
--------
<---------
HSFB2a(1)
------->
TEIL
<
--------->
HSFB2a(1)
<---------
TOE2(3)
<------
ZmHOX2a(1)
<-
<---------
HSFC1(2)
<---------
TOE1(3)
--------------------->
WRI1
-
--------->
HSFC1(2)
--------->
At4g35610
<---------
HSFC1(2)
<-------
---------->
DOF2
<---------
At4g35610
--------->
WRKY38(1)
<---------
LBD16
--------
-->
MYB52(1)
--------->
AtLEC2
<---------
At4g35610
--------->
HSFC1(2)
<---------
At4g35610
ggtgagaaagttcctgccatgaagacttctgctaaggcttcttctgagagcgatgactcatacatggacacttcttcggaggatgaatcgtcttctgctg
27401300
--------->
ZAT2
<---------
ZAT2
<---------
At4g35610
--------->
ANAC58
<------
NtERF2
<---------
RAP2.6(3)
------>
NtERF2
--------->
RAP2.6(2)
--------->
ATERF1(2)
--------->
RAP2.3(3)
--------->
ARR11(3)
>>>>>>>>>
AtERF-4
<---------
ARR11(3)
--------->
DEAR3(1)
<---------
ZAT2
--------->
RAP2.3(2)
--------->
At4g35610
<---------
GLK1(2)
>>>>>>>>>
AtERF-3
<---------
At4g35610
---------->
DOF2
<---------
ATERF1(2)
--------->
ARR11(3)
--------->
At4g35610
->
At4g35610
--------->
RAP2.3(1)
<---------
GLK1(2)
<-----------
RAV1(2)
--
ZAT2
--------->
ERF1
<---------
ARR11(3)
--------->
ANAC58
--->
RAV1(2)
--------->
ALFIN1
---------->
DOF2
<---------
ZAT2
--------->
ZAT2
---------
ARR14(2)
------->
PIF5
--------->
At4g35610
--------->
ZAT2
<---------
At4g35610
-----
ZmHOX2a(1)
--------->
At4g35610
--------->
ANAC58
<-----------
RAV1(1)
--------->
At4g35610
-------->
ARR14(2)
<-------
PIF5
--------->
ANAC58
==========================
RAV
<
--
At4g35610
--------->
ZAT2
--------->
ANAC46
<----------
DOF2
--------->
ANAC46
<---------
->
ZAT2
----------->
RAV1(2)
--------->
ANAC58
--------->
GLK1(2)
--------->
ANAC58
--------->
GLK1(2)
aggaacctgtaaacaaacctgctgcaagtgccgccaagccagctactaaagattctttattctctgctggtttcaagccagctgctaaagattctttatt
27401400
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AGI:
At1g72790.1
Description:
hydroxyproline-rich glycoprotein family protein. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G57070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45675.1)
Range:
from: 27398409
to: 27400461
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At1g72800.1
Description:
nuM1-related. similar to ATNUC-L1/PARL1 (PARALLEL 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G48920.1); similar to Os08g0192900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061178.1); similar to hypothetical protein OsI_027109 [Oryza sativa (indica cultivar-group)] (GB:EAZ05877.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 27400878
to: 27402162
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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