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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                       <---------HSFB2a(2)
                                                       --------->HSFB2a(2)
                                                  <---------AHL20(1)
                                         <---------ARR11(3)
                                         --------->ARR11(3)
                                         <---------AHL20(2)
                                         <---------AHL20(1)                                     ----
        <---------YAB1                   --------->AHL20(1)      ----------->GT1         --------->AHL20(2)
---->AHL20(2)              <---------CCA1(2)      --------->AHL20(1)        <---------YAB1<---------AHL20(2)
-----AHL20(2)        <---------ARR11(3)  --------->AHL20(2)      <----------ID1      <---------AHL20(2)
-----AHL20(1)        --------->ARR11(3) --------->AHL20(2)     ---------->DOF2     <----------DOF2
-AHL20(2)     <---------AtLEC2 <----------DOF2    <---------ARR11(3)  --------->AHL20(2) <---------AHL20(2)
 
tattttgaactatgtttggatggagaacttatagctttgaaaaatatattcaatatttttagaaaaaaaagaaaaaaatactatagctttaattttatat  27400500
                                    --------->AHL20(2)                                       <------
                    --------->ANAC55(2)                                                     <-------
                    <---------ANAC55(2)       <-----------GT1                               --------
                    <------MYB83    <---------AHL20(2)                                      <-------
                    <------MYB46(1)--------->AHL20(2)                                  <----------DOF2
     --------->ANAC58           <---------AHL20(2)    <----------DOF2            <---------ALFIN1
     --------->ANAC46       <---------YAB1  <---------WOX13(1)                --------->ANAC58
     --------->ANAC58     --------->YAB1 <---------YAB1  --------->AHL20(2)   --------->ANAC58
----->YAB1      --------->ATHB12--------->AHL20(2)    <---------DAG2        <-----------GT1---------
 
catcaaacaagaaacaaattgataggtatttataaatatttaatttgattaactcaactttttaatacacagccaattgaaaccccacttctttgccttt  27400600
                                                                                               -----
                                                                                            <-------
                                                                                            --------
                                                                                            <-------
                                                                                            <-------
                                                                                           ---------
                                                                                         --------->YAB1
                                                                                        <---------AHL20(2)
                                                                                        --------->AHL20(2)
                                                                                       <---------AHL20(1)
                                                                                       --------->AHL20(1)
                                                                                       --------->AHL20(2)
                                                                  --------->AHL20(2)   <---------AHL20(2)
                                                               <---------ICU4       --------->AHL20(2)
                                                            <---------ANAC55(2)     --------->ATHB51
                              --------->AHL20(2)            --------->ANAC55(2)     <---------ICU4
                              <---------AHL20(2)           <-------TEIL             <---------AHL20(2)
----DOF2   <---------DAG2    --------->AHL20(2)       <---------AHL20(2)           --------->ICU4
--------AGL15     <-----------GT1                     --------->AHL20(2)           <---------ATHB51
------->AGL15     ---------->ID1                      <---------AHL20(1)         --------->YAB1<----
--DAG2     <----------DOF2   <---------AHL20(2)       --------->AHL20(1)      --------->YAB1--------
-------->AGL1    <-----------GT1<---------TOE2(3) --------->ZAT6  <---------AHL20(2)<--------ATHB1 -
 
tttagtcgattccacttttttttcccttctaaattaatgaaaaaactttgttaacaataaaatacataattaaaaaaacatttgtaataatttaataatt  27400700
                    <------NtERF2                                            XXXXXXXXXXXXXXXXXXXX>MIR418
                   --------->RAP2.6(2)                                       --------->bZIP60(2)
                  <---------ANAC46                                           --------->TGA1a
                  --------->ATERF1(2)                                        --------->O2    <------
                  <---------ATERF1(2)   --------->ANAC58                     <---------TGA1a -------
           --------->YAB1    <---------ANAC58                        --------->MYB52(1)      -------
   --------->AHL20(2)        <---------ANAC55(2)                  ------>MYB46(1)           --------
---->AHL20(2)     <---------RAP2.6(2)   --------->ANAC58          ------>MYB83 ----------->TGA1
-ATHB1--------->AHL20(2)     --------->ANAC55(2)                <---------MYB59----------->HVH21
->AHL20(2) --------->AHL20(2)<---------ANAC46                <-----------GT1 <---------O2   <-------
--AHL20(2) <---------AHL20(2)----------->GT1        --------->ANAC55(2) --------->ANAC46  --------->AtMYB61
--ICU4--------->AHL20(1)     <---------ANAC58  ========================================bZIP_DOF
>ICU4--------->YAB1------>NtERF2        --------->ANAC46  --------->YAB1------->GAMYB    --------->MYB46(3)
-----AHL20(2)     <---------DEAR3(1)  =================================================bZIP_DOF    -
->ATHB51--------->YAB1  <-----------RAV1(1)    <----------DOF2  --------->TOE2(3)       ------->TEIL
-------->YAB1    --------->RAP2.6(3)  ---------->DOF2 <---------AHL20(2)===============MYC_MYB     <
 
tatcaaaaaaataataatatggcggcaatgttgcgttacaaaaacgccatcttttatgtaattgtaacctaataacagcaacgtgacgatgaaccaccac  27400800
                                               <---------ARR11(3)
                                               --------->ARR11(3)
                                              <---------CCA1(2)
   <---------ANAC58                       ----------->TBP
   <---------ANAC58                   ------>MYB83
   <---------ANAC46                 <---------MYB59
---ALFIN1                <----------DOF2  --------->AHL20(2)
-->AtMYB61            <---------ARR11(3) --------->AHL20(1)           <------------CBF
-->DEAR3(1)           --------->ARR11(3) <---------AHL20(1)   <---------ANAC58           ---------->DOF2
->MYB46(3)           <---------CCA1(2)------>MYB46(1)         <---------ANAC46--------->HSFB2a(2)
--MYB55(2)    --------->ANAC58      --------->TOE2(3)         <---------ANAC58<---------HSFB2a(2) <-
-------->ZAT2 --------->ANAC58   <-----------GT1           ------->GAMYB     *TSS     --------->TOE1(3)
---------ZAT2 --------->ANAC46--------->ANAC55(2)--------->TOE2(3)  <---------YAB1    --------->TOE2(3)
 
cgagttgcgttagaaaaacgccatatatcttttatgtaacctaatatatatatcttaaacaacaggcttggattattgtctctcgaaaacctaaaatcgc  27400900
                                                                    ----------->RAV1(2)
                                                    --------->AtMYB61
                                                    ============================RAV
                                                    ----------->RAV1(1)     --------->YAB1
                                                    ------->GAMYB --------->ARR14(2)
                                                  -------->P      <---------ARR14(2)
                                               --------->LBD16   <---------At4g35610       <--------
                                              --------->ANAC46   <---------ZAT2            <--------
                                              --------->ANAC58   --------->ZAT2       ==============
                                              --------->ANAC58   --------->At4g35610  ---------->DOF2
                                             <---------LBD16  <---------At4g35610 <----------ID1
                                       --------->ANAC58    =========================================
                                    --------->STY1(2)      ---------->DOF2  --------->ATHB12       <
        <---------ANAC58            <---------STY1(2)     <---------REM1(1)--------->ICU4  ---------
        <---------ANAC58           --------->ANAC58 ================================================
    <----------DOF2   <---------AtLEC2 --------->ANAC58 --------->At4g35610<---------YAB1  <--------
---------DOF2  <---------At4g35610 --------->ANAC58--------->MYB46(3) ------>ZmHOX2a(1)    ---------
 
tctttctcttttcttgtcatcttctccatggctgagtctagcaagttatccgcaaccacagttgaagcagctcctgctatgattaaggccaaagacgtga  27401000
                                             <---------ARR14(2)
                                             --------->GLK1(2)
                                        ---------->DOF2
       <---------HSFB2a(2)            --------->ANAC58
-TGA1a --------->HSFB2a(2)        --------->ARR11(3)
-ANAC55(2)                       --------->GLK1(1)
=bZIP_DOF         --------->GLK1(2)   <---------ANAC55(2)
=bZIP_DOF         --------->ARR14(2)  --------->ANAC58
-----------GT1    <---------ARR14(2)  --------->ANAC46                                 <---------ARR14(2)
>ANAC55(2)        <-----------ARR10<------ZmHOX2a(2)                                   --------->ARR14(2)
=MYC_MYB         <---------GLK1(2)<---------ARR11(3)         --------->TOE2(3)  <---------YAB1
-O2    --------->LBD16           <---------GLK1(1)   ----------->GT1     ===========================
>O2------>ZmHOX2a(1)      ----------->HVH21  --------->ARR14(2)          <------ZmHOX2a(1)       ---
 
tttctccttccgagaaggaagaatctgatcagacggagatcacgaaagtatccgtcttgaaaaaccttgatgagaaggagatgatcaaagaattcgctga  27401100
                                                                             --------->HSFB2a(1)
                                                                             <---------HSFC1(2)
                                                                             <---------HSFB2a(1)
                            <---------MYB46(3)                      --------->GLK1(1)
                         --------->ARR14(2)                    <---------LBD16
                   --------->DAG2             --------->ARR14(2)   <---------ARR14(2)
                  <XXXXXXXXXXXXXXXXXXXXMIR169G*  <---------MYB46(3)--------->ARR14(2)
              --------->ANAC58            <---------LBD16   ---------->DOF2  --------->HSFC1(2)
          --------->HSFB2a(2)         ---------->DOF2      ---------->DOF2  <-----------ARR10
          <---------HSFB2a(2)   <------MYB46(1)  <-----------RAV1(1)--------->CCA1(2)
     <---------At4g35610 <---------ARR14(2)   <---------ARR14(2)  <------NtERF2      <---------At4g35610
====HOX2a_HOX2a  ---------->DOF2----------->GT1--------->GLK1(1)<---------ANAC46     --------->At4g35610
--->ZmHOX2a(2)--------->ANAC58  <------MYB83 <------NtERF2<---------ATHB12 <------ZmHOX2a(1) -------
 
tcgtcttcagcgtctcgaagcaaaggtggatttgttggtaacaaaggcggatttgttggcaataaaggcggatatacaggagcttctcatctcagccaag  27401200
                                                                                            --------
          ------>ZmHOX2a(1)                                                                 <-------
      --------->ARR11(3)                                                                    --------
    <---------HSFB2a(1)                                                           ------->TEIL     <
    --------->HSFB2a(1)       <---------TOE2(3)                              <------ZmHOX2a(1)    <-
    <---------HSFC1(2)        <---------TOE1(3)                          --------------------->WRI1-
    --------->HSFC1(2)    --------->At4g35610                    <---------HSFC1(2)         <-------
  ---------->DOF2         <---------At4g35610    --------->WRKY38(1)   <---------LBD16      --------
-->MYB52(1)    --------->AtLEC2       <---------At4g35610        --------->HSFC1(2)      <---------At4g35610
 
ggtgagaaagttcctgccatgaagacttctgctaaggcttcttctgagagcgatgactcatacatggacacttcttcggaggatgaatcgtcttctgctg  27401300
                                     --------->ZAT2
                                     <---------ZAT2
                                     <---------At4g35610
                                --------->ANAC58
                             <------NtERF2
                            <---------RAP2.6(3)
                            ------>NtERF2
                           --------->RAP2.6(2)
                           --------->ATERF1(2)
                           --------->RAP2.3(3)                                        --------->ARR11(3)
                           >>>>>>>>>AtERF-4                                           <---------ARR11(3)
                           --------->DEAR3(1)                               <---------ZAT2
                           --------->RAP2.3(2)               --------->At4g35610      <---------GLK1(2)
                           >>>>>>>>>AtERF-3                  <---------At4g35610  ---------->DOF2
                           <---------ATERF1(2) --------->ARR11(3)           --------->At4g35610
->At4g35610               --------->RAP2.3(1)  <---------GLK1(2)          <-----------RAV1(2)
--ZAT2                    --------->ERF1       <---------ARR11(3)      --------->ANAC58
--->RAV1(2)             --------->ALFIN1   ---------->DOF2   <---------ZAT2 --------->ZAT2
---------ARR14(2)      ------->PIF5  --------->At4g35610     --------->ZAT2 <---------At4g35610
-----ZmHOX2a(1) --------->At4g35610 --------->ANAC58        <-----------RAV1(1)--------->At4g35610
-------->ARR14(2)      <-------PIF5 --------->ANAC58        ==========================RAV          <
--At4g35610     --------->ZAT2  --------->ANAC46   <----------DOF2     --------->ANAC46   <---------
->ZAT2       ----------->RAV1(2)--------->ANAC58--------->GLK1(2)      --------->ANAC58--------->GLK1(2)
 
aggaacctgtaaacaaacctgctgcaagtgccgccaagccagctactaaagattctttattctctgctggtttcaagccagctgctaaagattctttatt  27401400
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AGI:  At1g72790.1   
Description:  hydroxyproline-rich glycoprotein family protein. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G57070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45675.1)
Range:  from: 27398409    to: 27400461    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g72800.1   
Description:  nuM1-related. similar to ATNUC-L1/PARL1 (PARALLEL 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G48920.1); similar to Os08g0192900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061178.1); similar to hypothetical protein OsI_027109 [Oryza sativa (indica cultivar-group)] (GB:EAZ05877.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 27400878    to: 27402162    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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