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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                      <---------LBD16
                     <---------LBD16
               <-----------RAV1(1)
       <---------ARR11(3)
       --------->ARR11(3)                                                                      <----
      <---------RVE1(1)            --------->ANAC58                    ----------->RAV1(1)   -------
      <---------GLK1(1)            --------->ANAC58                   --------->ANAC46     ---------
      --------->GLK1(1) --------->LBD16                               <---------ETT(1) --------->YAB1
     --------->ARR11(3)--------->LBD16                  --------->ANAC46              <------ZmHOX2a(2)
     <---------ARR11(3)<---------LBD16                  --------->ANAC58           <---------ETT(2)
----------->RAV1(1)<-----------HVH21     <---------ATHB12      --------->YAB1     --------->DDF1  <-
------->At4g35610  <---------SPL7  --------->ANAC46     --------->ANAC58  <XXXXXXXXXXXXXXXXXXXXXMIR447C
 
cagcaacagatatctcttctggtgtccgggggtaatccaagctaatcaactcatcgtccaaggcattcaaaacccgacaaaacatgtcgatcacaacagc  27332700
                                                  <---------ZAT18
                                             ---------->DOF2
                                           <---------ATHB12     <------ZmHOX2a(2)
                                    ===================================HOX2a_HOX2a
                                    <------ZmHOX2a(1)  --------->YAB1
-----ALFIN1             --------->ANAC58 ------>MYB46(1) <---------YAB1                           <-
>GAMYB                  --------->ANAC58 ------>MYB83 --------------->AGL15             <---------ZAT2
->DOF2   <---------ATHB12       --------->DEAR3(1)--------->ZAT18 ---------->DOF2      --------->ANAC58
--------DAG2         <---------ATHB12  <---------MYB59<---------------AGL15            --------->ANAC58
 
acctttgcacaaatgaagcatgaaatcaagaaacaccgaggaccaaatcaaagggtactcataatagatcaaagtagccaaaacctgtgcaagcttgttt  27332800
                                                                                          XXXXXXXXXX
                                                                                    --------->ANAC55(2)
                                                          --------->ANAC58          <---------ANAC55(2)
                --------->HSFB2a(2)                       --------->ANAC46          --------->ANAC46
                <---------HSFB2a(2)      <---------YAB1   --------->ANAC58       ------>ZmHOX2a(1)
  ---------->DOF2        -------->P   --------->ICU4    ---------->DOF2     <---------GLK1(1)<------
----------GT1------>ZmHOX2a(1)     <---------YAB1      <---------ATHB12     --------->GLK1(1)-------
 
ttaacaaaaggaggtccttccacaactctaccagcattctcattatcaataacctccaaacaagccattgaaaacactgatttcctcacataactctgct  27332900
             <-------TEIL--------->TOE1(3)
           --------->AGP1--------->TOE2(3)
           --------->ARR11(3)
           <---------ARR11(3)                                                        --------->TOE2(3)
   <---------ZAT2    <-----------GT1 ------>ZmHOX2a(1)                   --------->ANAC58
XXXXXXXXXX>MIR783   <-----------GT1----------->RAV1(2)    --------->ARR14(2)         --------->YAB1
---At4g35610<------ZmHOX2a(2)    --------->ARR11(3)--------->MYB46(3)    --------->ANAC58
-->At4g35610================================HOX2a_HOX2a   <---------ARR14(2)         --------->TOE1(3)
 
catccaagctcatagatccatatttaacccttaaaacatcctgaagcgtttgcaaacaccagaactgaacttggacaagcttagaaaaccataacttctc  27333000
                                               --------->MYB52(1)
                          <----------DOF2   <---------ANAC55(2)
                   <------ZmHOX2a(1)        --------->ANAC55(2)                          ---------->DOF2
       --------------->AGL15      --------->At4g35610                           ----------->RAV1(1)
       <---------------AGL15      <---------At4g35610       <----------DOF2  ------->GAMYB
      ----------------->AGL2 --------->ATHB12  <-----------GT1 ---------->DOF2--------->At4g35610 <-
 
aatacatatactacaaatagaaggagtctctttgatttgctgacaataagtaacagcttgagactttaaagccgaatcaacagcaccagtttcaaagcta  27333100
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                             <------
                                                                                             <------
                                                                                          ----------
      <---------ANAC46                        ----------->TBP      --------->GLK1(1)     <-------GAMYB
      <---------ANAC58                 ------->GAMYB --------->TOE2(3)                  <-----------RAV1(1)
      <---------ANAC58     <---------ZAT6<---------ALFIN1         <---------ARR11(3)    <---------MYB46(3)
<---------YAB1  <-----------HVH21     --------->ANAC46   ---------->DOF2                --------->MYB52(2)
----------GT1   <---------ARR11(3)  <-----------GT1  --------->TOE1(3)             ------>ZmHOX2a(1)
 
attactattgcctgttcaaggtcatccattgtgttaacttaaccccactacaaaaaccctaaaaaccgagatttcaaaatccagtcctggtttgttgcat  27333200
                                   <---------GLK1(2)
                              <---------ZAT2
            <---------ANAC58  <---------At4g35610
-------->ANAC58            <---------MYB52(1)                                               --------
-------->ANAC46           <-----------HVH21                         <---------GLK1(2)       --------
-------->ANAC58           <-----------TGA1        <---------ZAT14   <---------ARR14(2)      --------
---ANAC58   <---------ANAC58  --------->ZAT2 <---------ZAT14<---------DAG2               <----------ID1
---ANAC58   <---------ANAC46  --------->At4g35610 --------->ZAT14   --------->ARR11(3) ---------->DOF2
>ID1 ------------>CBF  --------->ARR14(2)   ------>ZmHOX2a(1)    --------->YAB1   >>>>>>>>>TBF1   <-
 
acaagtcaaacaatgccttgaattagtatcgtcagctagcttctctccttcactgttctcttcccttatcagattttgatgcgaagaagaaaaagacgaa  27333300
                                        <---------ANAC58
                                      --------->ARR11(3)
                                      <---------ARR14(2)
                                      --------->ARR14(2)
                                     <------ZmHOX2a(1)
                          <---------HSFB2a(2)                                                  -----
      <------MYB46(1)     --------->HSFB2a(2)                           --------->ALFIN1 --------->DAG2
      <------MYB83      -------->P   ===========================HOX2a_HOX2a             ---------->DOF2
->ANAC46            <---------At4g35610 <---------ANAC58          <---------YAB1  ----------->GT1
->ANAC58            --------->At4g35610 ------>ZmHOX2a(2) ------>ZmHOX2a(2)    --------->CCA1(2)
->ANAC58     <---------ANAC58        ============================HOX2a_HOX2a  --------->ARR11(3)
---------DOF2<---------ANAC58---------->DOF2<------NtERF2<------ZmHOX2a(2)    <---------ARR11(3)  <-
 
acttttagtgggtttcgcttgagagcttaccagaaagtaaggatcgtggcgattttagcgatcggatttatgagagtgggagatatagtagaaaagggat  27333400
                                                                          --------->ANAC55(2)
                                                                          <---------ANAC55(2)
                                                                         <---------LBD16
                                                                       <---------SPL7
                                                                   <-----------GT1
                                                           XXXXXXXXXXXXXXXXXXXX>MIR426
     --------->TOE2(3)                                    <---------HSFC1(1)
  --------->GLK1(1)                                       --------->HSFC1(1)                <------ZmHOX2a(1)
  <---------GLK1(1)                                       --------->HSFB2a(2)        --------->ICU4
---->ICU4             <----------DOF2   <----------DOF2   <---------HSFB2a(2)     <---------YAB1
--------TOE2(3) <---------GLK1(1)       <---------DAG2 --------->GLK1(2)--------->MYB52(1) ---------
 
tatggaaaccctagtttgggtttctctttgaattcaaagaatacttttttttggtgagtttctagaaaatttcccttacggatttataaatatgaggaaa  27333500
                                                              <---------ANAC58
                                                              <---------ANAC58     --------->ZAT14
                            ----------->GT1            <---------AHL20(2)       --------->LBD16 ----
                     <---------At4g35610               <---------YAB1         <---------LBD16   ----
                     --------->ZAT2                 <---------RVE1(1)   <---------ARR11(3)     <----
                     --------->At4g35610           --------->ARR11(3)   --------->ARR11(3)     <----
                     <---------ZAT2                <---------ARR11(3)   --------->AHL20(1)   <------
-->GT1 <---------ZAT14 <----------DOF2             <---------GLK1(2)    <---------AHL20(1)  --------
 
attgtgagactggagagaagacggagctgtagggtttttttttttttatacacagatttttattagcttgcagaatattttcccagagaactataaatat  27333600
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AGI:  At1g72560.1   
Description:  PSD (PAUSED); tRNA binding. similar to hypothetical protein [Vitis vinifera] (GB:CAN81593.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ66174.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45614.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain HEAT (InterPro:IPR000357); contains InterPro domain Exportin-1/Importin-beta-like (InterPro:IPR013598)
Range:  from: 27328051    to: 27333129    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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