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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                               <---------AHL20(2)
                           <---------RVE1(1)                                             <----------
                           <---------CCA1(1)                                      <---------AHL20(2)
                          --------->ARR11(3)                <---------ARR14(2)    --------->AHL20(2)
                          <---------ARR11(3)       --------->AHL20(2)            <---------AHL20(2)
                       --------->HSFC1(1)         --------->AHL20(2)          -------->ATHB1
                 --------->ARR11(3)               <---------AHL20(2)          --------->AHL20(2)
                 <---------ARR11(3)           --------------->AGL15           <--------HAHB4
                 --------->ARR14(2)     --------------->AtSPL8                --------->ATHB51
     <---------ARR11(3)--------->HSFB2a(2)   ----------------->AGL3          --------->ICU4   ------
     --------->ARR11(3)<---------HSFB2a(2) <-----------GT1  --------->ARR14(2)<---------AHL20(2)----
 ---------->DOF2 <---------ARR14(2)  <----------DOF2     <---------TOE2(3)   <---------ATHB51 ------
 
aaatcaaagacatttcttagtatcttctagatatttcattcttttagtaccatataaattagggatttggacaattcacaattatttattttaaaccaaa  27057400
  <---------ICU4
  <--------ATHB1
  --------->ATHB51
  -------->HAHB4
 <---------AHL20(2)
 --------->AHL20(2)
 <---------YAB1
 --------->ICU4
 <---------ATHB51
--------->AHL20(2)                     <---------------AtSPL3
<---------AHL20(1)          <---------ANAC46
-GT1                     ----------->HVH21      <---------AHL20(2)            --------->MYB46(3)
>MYB83               --------->At4g35610        --------->AHL20(2)           --------->ANAC46
----->YAB1      --------->YAB1         <---------------AtSPL8    --------->AHL20(2)      --------->YAB1
>MYB46(1)     <---------MYB52(1)--------->ANAC55(2)              <---------AHL20(2)--------->YAB1 <-
 
caaaataattgttctccgataatcagatgtgacttatgtgatatagtacatataaatatacacactgtttaaatttgtctacccaatcggaatcatagaa  27057500
                                                --------->AHL20(2)
                                               <---------YAB1                               <-------
                                            <---------AHL20(2)                              --------
                                       <----------DOF2                                  <-----------HVH21
                               --------->MYB52(1)--------->AHL20(2)                    --------->ANAC58
                               <---------ARR14(2)<---------AHL20(2)                    --------->ANAC46
                    <---------------AtSPL8  <---------YAB1                             --------->ANAC58
---------DOF2     --------->MYB52(1)   <---------DAG2       <-----------HVH21          --------->bZIP60(2)
 
actttattgtttacccaaacaaaacggtactgaatatcggaactttttttattaaaaaaaaactgtgagagagaaattgaatcaacgtccaagtcacttg  27057600
                                                                                        <---------ANAC58
                                                                                        <---------ANAC58
                                                                                      ------>MYB46(1)
                                                                              <-------MYC4
                                                                              <-------MYC3
                                                                              ------->MYC4
                                                                              <-------MYC2
                                                                              ------->MYC2
                                                                              ------->MYC3
                                                                              -------->ABF1
                                                                             ==================MYC_MYB
                                                                             --------->ANAC55(2)
                                                                             <---------ANAC55(2)
                                                                             --------->O2
                                                                             <---------O2
                                                                             <--------ABF1
                                                                             --------->TGA1a
                             --------->LBD16                                 <---------TGA1a
                            --------->LBD16                              <-----------HVH21
                            --------->ANAC46                            ------->GAMYB ------>MYB83
                            ----------->GT1                   <---------TOE1(3)       -------->P
       --------->DAG2      <---------LBD16               ----------->GT1===============MYC_MYB
      ---------->DOF2--------->AHL20(2)                  <---------ZAT6 ----------->HVH21
 --------->ANAC58    <---------AHL20(2)               <------ZmHOX2a(1)<------------AtMYB77
 --------->ANAC58   <---------AHL20(2)             <-----------RAV1(2) ================MYC_MYB
--ANAC55(2)         --------->AHL20(2)       ==========================================bZIP_DOF
->ANAC55(2)      --------->WOX13(1)          ---------->DOF2  <---------TOE2(3)      <---------ALFIN1
 
atgcaagaaaaaagcgaaaccaattaaattcccgtaaaaacagaacacaaaagaacaggagagttaatgttctaactgacacgtgtccctaccttgccat  27057700
          --------->AHL20(2)                    --------->At4g35610
          <---------AHL20(2)                  <---------ICU4
         --------->YAB1                       --------->YAB1
         --------->AHL20(2)                --------->YAB1                                     <<<<<<
   --------->ANAC58                     --------->YAB1                --------->YAB1       <<<<<<<<<TBF1
   --------->ANAC58                 --------->LBD16           --------->YAB1              xxxxxxxxxx
   --------->ANAC46                --------->ANAC46     ----------->GT1               <---------CCA1(2)
 
acactcacacaattaaaatttctaactctgtctcttatccgaaaaataatcatctccaagtgtaataagaaaatcaaaataaaactctcatttcttcttc  27057800
                                         *TSS                                          -------------
       --------->AHL20(2)           --------->ANAC46                                  <----------ID1
------>ZmHOX2a(1)                   --------->REM1(1)                           ----------->GT1
<<<TBF1----------->TBP            ------>ZmHOX2a(1)                            ---------------------
xxxxxx>smallRNA(i)           <---------At4g35610     --------->TOE2(3)--------->MYB52(1)          --
 
ttcctcgcctataaatacaactccattctctcatctcctacatcacaaaacaaaaacctcacttaaaaaaaaaaaacagaagacagaaaaaaacaaaaaa  27057900
         >>>>>>>>>>GT-3b
      <----------ID1                                                                  --------->LBD16
      ----------->GT1                                                                 <-------------
    ---------->DOF2                                                                   ------>ZmHOX2a(1)
<----------ID1                       <-----------GT1                                  --------------
----------->ANAC81        <----------DOF2   ---------->DOF2                    <-----------GT1
--->ANAC81             <-----------GT1   ------>ZmHOX2a(1)       <---------ANAC58    <--------------
-------->DOF2--------->AHL20(2)<----------DOF2                   <---------ANAC58    <--------------
 
aaaaagaaaaagaaaaataaacaaattttcttttcttttttttcctctaaagtttctattttgtctattcgtgtttttttttttacttcctgataatggg  27058000
                                 --------->At4g35610
                                <---------DEAR3(2)
                                <---------ERF1
                                <---------RAP2.3(1)
                                <---------RRTF1(1)
                                ------>NtERF2
                                <---------ATERF1(1)
                               <---------RAP2.6(2)
                               --------->DEAR3(1)
                               <---------DEAR3(1)
                               <---------RAP2.3(2)
                               <---------RAP2.3(3)
                              <---------At4g35610
                              ------>NtERF2
                              <------NtERF2
                             <---------RRTF1(1)
                             <---------ATERF1(1)
                             <---------RAP2.3(1)
                             <---------DEAR4(2)
                            <---------RAP2.3(2)                          --------->ARR14(2)
                            <---------RRTF1(2)            --------->ARR11(3)
                            <---------RAP2.6(2)           <---------ARR11(3)     ----------->GT1
                            <---------DEAR3(1)           <---------HSFB2a(1) --------->At4g35610
                           <---------LBD16               --------->HSFB2a(1) <---------At4g35610
                           <-------TEIL               <------NtERF2   ------->GAMYB
                     ---------->DOF2                 --------->LBD16  --------->AtMYB61            <
--AGL15            <---------MYB52(2)              <------NtERF2     --------->MYB46(3)         <---
->AGL15           ------>MYB83--------->ATERF1(1)  <---------LBD16  -------->P   <---------ANAC46<--
---AGL2           ------>MYB46(1)<------NtERF2   <---------DEAR3(1)<-----------GT1             -----
---AGL3 ----------->GT1  --------->ARR11(1)    <-----------HVH21 <------ZmHOX2a(2)         ---------
 
agcctatgaaacagaaaaaccaactaaagatgcggcggctctagagacacagtcgccggaagatttcgatcaaccatctccgcttcgtaaaatcatctcc  27058100
                   <---------ZAT14
              --------->LBD16
            --------->ATERF1(1)
            <------NtERF2
           ------>NtERF2
           --------->ABI4(1)
          --------->RAP2.3(2)
          --------->ATERF1(2)
          --------->DEAR3(1)
          <---------ATERF1(2)
          <---------DEAR3(1)
         --------->DEAR4(2)                                              --------->ANAC46
         --------->ORA47(2)                                             ------>ZmHOX2a(1)
         --------->ATERF1(1)                                    <-------TEIL
         --------->RAP2.3(1)                                ------->TEIL--------->LBD16
         --------->ERF1                                     <-------TEIL<---------LBD16
        <---------ATERF1(1)             <---------At4g35610 --------->SPL7
       --------->DEAR3(1)               --------->At4g35610 <---------TOE1(2)<---------GLK1(1)
---------DEAR3(2)<---------ZAT14     ---------->DOF2       <---------SPL1(1)<---------GLK1(2)
--------HVH21<---------DEAR3(1)   <----------DOF2          <---------MYB52(1)--------->GLK1(1) <----
-------MYB52(1)  --------->ZAT14<---------PCF2            <---------SPL7--------->HSFB2a(2)    <----
---->ANAC46<---------ATERF1(1) ----------->TCP11(1)     <---------------AtSPL3                 -----
>At4g35610--------->RAP2.3(3)--------->ALFIN1           --------------->AtSPL8             <--------
 
gtcgcttccatcgccgccggtgtacagttcgggtgggccttacagctctctcttcttactccgtacgttcaactcctcggaatccctcacaaatggtcat  27058200
                                                                                          <------NtERF2
                                                                                          --------->ATERF1(1)
                                                                                         <---------ATERF1(1)
                                                                                         ------>NtERF2
                                                                                        --------->DEAR3(1)
                                                                                       <------NtERF2
                                                                                  <------MYB46(1)
                                                                                  <------MYB83
                                                                                 --------->MYB59
                                                                              --------->ARR14(2)
                                                                          <-----------------AGL3
                                                 <---------MYB46(3)       ----------------->AGL3
                                                 <---------DEAR3(2)       ----------------->AGL1
                                                <---------TOE2(2)         ==========================
                                <---------WOX13(1)                        <-----------------AGL2
                              --------->ATHB12  <---------DEAR3(1)        <-----------------AGL1----
                         --------->LBD16        <---------TOE1(2)         ----------------->AGL2<---
                         ------>NtERF2      <---------ATHB12           <------MYB46(1) --------->ATERF1(1)
-----At4g35610          --------->ANAC46 --------->AtMYB61             <------MYB83    --------->RAP2.3(1)
-----CCA1(2)           <---------LBD16  --------->MYB46(3)            --------->MYB59 <---------ATERF1(1)
---->At4g35610 --------->PCF5<---------YAB1------>MYB83            <---------REM1(1) <---------DEAR3(1)
---HVH21  <-----------RAV1(1)--------->ICU4------>MYB46(1)  ----------->HVH21 <---------ARR14(2)====
 
ctctcatttggctctgtggtccagtctccggcatgattgttcaaccaatcgtcggtttccacagtgaccgatgtaggtccaaatttggtcgccgtcgtcc  27058300
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AGI:  At1g71880.1   
Description:  SUC1 (SUCROSE-PROTON SYMPORTER 1); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen ion symporter. Identical to Sucrose transport protein SUC1 (SUC1) [Arabidopsis Thaliana] (GB:Q39232); similar to ATSUC6 (SUCROSE-PROTON SYMPORTER 6), carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen ion symporter [Arabidopsis thaliana] (TAIR:AT5G43610.1); similar to ATSUC5/SUC5 (SUCROSE-PROTON SYMPORTER 5), carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen ion symporter [Arabidopsis thaliana] (TAIR:AT1G71890.1); similar to SUC2 (SUCROSE-PROTON SYMPORTER 2), ca
Range:  from: 27057842    to: 27060003    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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