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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                              <---------DAG2
                                                              <----------DOF2
                                                           <-----------GT1
                                                      ------>ZmHOX2a(2)
                                                     <------ZmHOX2a(2)
                                                    --------->GLK1(2)
                                                    <---------ARR11(3)
                                                    --------->ARR11(3)
                                                    --------->ARR14(2)
                                                    <---------ARR14(2)
                            <---------YAB1          <---------AGP1                                 <
                       ----------->GT1           --------->MYB59                             <------
        <---------------AtSPL8    ===========================HOX2a_HOX2a                     -------
        <---------------AtSPL3    ==========================HOX2a_HOX2a                     --------
  ------>ZmHOX2a(2)<-----------GT1<------ZmHOX2a(1)<------ZmHOX2a(1)         <---------MYB46(3)   <-
 
tttgatctatacgagtacgtttttagcagttaatataggatgtgcaaagggttaggatctgtttactttttttttttttttggttacacttctcatttat  26942800
       <-------MYC2
       ------->PIF5
       ------->MYC2
       <-----------HVH21
       <-------PIF5
       <-------MYC3
       ------->MYC3
      ====================================bZIP_DOF
      --------->O2
      --------->bZIP60(2)
      <---------TGA1a
      --------->TGA1a
      <---------O2
      --------->ANAC46
    <------------OsbHLH66
    <---------ALFIN1                       <------ZmHOX2a(1)
 --------->ANAC46                         ----------->GT1
-----------GT1                            <----------ID1
---AHL20(2)                       <-----------------AG                           --------->ATHB12
-->AHL20(2)--------->At4g35610    <-----------------AGL1                        <---------YAB1
->AHL20(2) <---------At4g35610 <----------DOF2                      ---------->DOF2  <-----------GT1
----------GT1     <---------CCA1(2) <---------YAB1       <---------YAB1       --------->YAB1       <
 
ttttcccccacgtgagctctcatttctcaggcttcttttctcattaggaaaaaaaaaactattcttacccatatagctcaaggatgatttacacattttg  26942900
                                                                                       --------->ICU4
                                                                                     <---------ICU4
                                                                                    --------->ICU4
           --------->DAG2                                                           <---------YAB1
          ---------->DOF2                                                         <---------ICU4
     --------->YAB1                                                               --------->YAB1
    <---------YAB1                                                               <---------ATHB12
  <---------GLK1(1)                                                            ------>MYB46(1)
  --------->GLK1(1)   <-------GAMYB              <-------TEIL                  ------>MYB83
 <---------ARR11(3)   --------->At5g28300--------->ZAT18                     --------->AtMYB61
 --------->ARR11(3)  ----------->GT1     <---------ZAT18                     <---------MYB59 <------
---------ZAT6   ---------->DOF2     ---------->DOF2  <-------TEIL     <---------ATHB12 <---------YAB1
 
tagagatatcataaaaagctaatgcggttaaaaactatccaaagtccacaagtacatacacataggggaacaaatcacgaccaaatcatgattatggacg  26943000
                               <---------At4g35610
                               --------->At4g35610
                               <-------GAMYB
                             >>>>>>>>>>>>WRKY18                     --------->AHL20(1)
                          --------->ETT(2)                          <---------AHL20(2)          ----
               --------->TOE2(1)                           <----------DOF2          ----------->GT1
               --------->TOE1(1) ----------->HVH21    --------->ETT(1)   ---------->DOF2       <----
---------------WRI1 --------->ICU4               <---------GLK1(2)  --------->AHL20(2)     ---------
 
gacattacaaagacttcatcgtacttatgttgacagttgacaccagataaaagattgtcgggctttacaaataaaatgaagcccattttgtgaaaccaat  26943100
                                                                 --------->REM1(1)
                                                       -------->ZAP1
                                                     <---------WRKY18(1)
                                                    --------->WRKY45
     <---------ATHB12                               ----------->HVH21
 <---------MYB59                                    --------->WRKY12                           <----
--------->ANAC58                                   --------->DOF5.7(2)                  --------->AHL20(2)
--------->ANAC58                     ---------->DOF2--------->WRKY38(1)  ------>ZmHOX2a(1) ---------
----->YAB1                         <---------ZAT6 <-------GAMYB  --------->YAB1   <---------AHL20(2)
-----ATHB12                <---------ATHB12---------->DOF2<---------GLK1(2)      --------->AHL20(2)
>MYB46(3)       ----------->GT1<---------MYB52(1)<---------MYB46(3)     --------->TOE2(3) <---------CCA1(2)
 
gagacccaattaagaagggaagaaaaacaaatcagttagtgaaagtgaaaggtcgttgaccgattccttcatcatcctcatcgttttaattttaaatctt  26943200
                                  ------->MYC3
                                  <-------MYC3
                                  <-------MYC2
                                  <-------MYC4
                                  ------->MYC2
                                  <-------PIF5
                                 --------->ANAC58
                                 --------->HSFB2a(1)
                                 --------->ANAC58
                                 <---------HSFB2a(1)
                                <---------TOE2(2)
                                <---------TOE1(2)
                             --------->ANAC58
                             --------->ANAC58
                            --------->SPL7
                            <---------ZAT18
                            *TSS------->TEIL
                          <---------SPL7
 <---------HSFC1(1)   <---------ANAC46                --------->MYB46(3)
 --------->HSFC1(1)   <---------ANAC58   <----------DOF2
 --------->HSFB2a(2)  <---------ANAC58   <---------DAG2------->GAMYB
 <---------HSFB2a(2) --------->ATHB12 <---------ALFIN1<---------MYB52(2)        ----------->RAV1(1)
-----YAB1         <------------CBF------->PIF5     <----------ID1    --------->TOE1(2)             <
>ARR11(3)---------->DOF2<---------------AtSPL3   --------->YAB1     <---------ANAC55(2)    ---------
 
gattctagaagaaaaagagaccattgagtggtacgcacgttccacttttctatgacaacaaactcacaaaaacgtgagagagacaacaaaaaatgaaagt  26943300
            <---------CCA1(2)
       --------->ORA47(1)
       ------>NtERF2
      --------->DEAR3(1)
     --------->ORA47(2)
     --------->DEAR3(2)                                        --------->RAP2.6(3)
     --------->ATERF1(1)                                      --------->ARR14(2)
     <------NtERF2                                            <---------ARR14(2)
     --------->RAP2.3(1)                                 --------->ANAC58
    <---------ATERF1(1)                                  --------->ANAC58               <---------MYB52(1)
   <---------DEAR3(1)                                  ---------->DOF2      <---------TOE2(3)
---------AtMYB61 <---------ANAC55(2)                >>>>>>>>>GATA-1        ---------->DOF2      <---
->DOF2<---------ETT(1)                            ----------->GT1----------->GT1   <-----------GT1
 
ttttggtcgccgaccatatcacctaagacatagtagagagaatgagagatagatagataaaagcaaatcggcaaaaactaaagttttttccattaagtag  26943400
                                                                  --------->DOF5.7(2)
                                                                  <---------MYB52(1)
                                                                 <-----------HVH21
                                                                 <-------GAMYB
                                                               <------NtERF2
                                                               --------->RAP2.3(1)
                                                              ------>NtERF2
                                                             --------->DEAR3(1)
                                                             --------->RRTF1(2)
                                                             <---------DEAR3(1)
                                                            --------->DEAR4(2)
                                                            --------->RRTF1(1)
                                                           <---------RAP2.3(1)
                                                           <---------DEAR4(2)
                                                  --------->WRKY38(1)
                                            ------>NtERF2 ------->GAMYB
                                            --------->ABI4(1)--------->RRTF1(3)
                                           <---------ALFIN1<---------ATERF1(1)
                                           --------->AtMYB61--------->ERF1
                                          --------->ORA47(2)--------->RAP2.6(1)
                                          --------->MYB46(3)--------->RAP2.3(1)
                                          <------NtERF2   --------->DEAR3(1)  --------->AGP1
                                          --------->ATERF1(1)--------->RAP2.3(2)------>ZmHOX2a(2)
            <---------ANAC46              --------->DEAR3(2)--------->ORA47(2)--------->ARR11(3)
          <---------MYB46(3)              --------->DEAR4(2)--------->ATERF1(1)=====================
          --------->MYB55(2)             ------>NtERF2   --------->MYB46(3)   <---------ARR11(3)
         --------->ALFIN1                <---------ATERF1(1)<------NtERF2     <---------AGP1
         <---------AtMYB61              <---------ALFIN1------>MYB46(1)   ---------->DOF2        ---
      <---------DEAR3(1)   <---------ANAC58--------->DEAR3(1)--------->RAP2.3(3)====================
     <---------At4g35610   <---------ANAC46--------->DREB2C(2)--------->ABI4(1)<------ZmHOX2a(2) <--
---ZmHOX2a(1)              <---------ANAC58------->GAMYB------>MYB83<---------DOF5.7(2)         ----
 
gagttttgagcggtggtttgttttgtaatgggttgtatttgtgccaccgcccgttcaccaagcgccgccgttaccgataaagatctattagattccagca  26943500
                                                                         --------->SPL7
                                                                       --------->TOE1(2)
                                                                       <---------SPL7
                                                                      --------->TGA1a
                                                                      --------->ANAC46
                                                                      --------->ANAC58
                                                                      --------->ANAC58
                                                                     --------------->AtSPL3
                                                                <-----------HVH21
                                                               =================bZIP_DOF
                                                               <----------DOF2
                                                              ------>ZmHOX2a(2)
                                                             <------ZmHOX2a(2)
                                                            <---------ARR11(3)
                                                            --------->GLK1(2)
                                                            --------->ARR11(3)
     ------>ZmHOX2a(1)                                      <---------ARR14(2)
    --------->TOE2(3)                                       --------->ARR14(2)
============HOX2a_HOX2a                                    <------ZmHOX2a(1)                   <----
------>ARR14(2)                                           --------->HSFB2a(1)                 >>>>>>
============HOX2a_HOX2a       <-----------HVH21           <---------HSFB2a(1)                -------
-------ARR14(2)              --------->ANAC46             <---------HSFC1(2)         <---------At4g35610
----->GLK1(1)         <---------ICU4                      --------->HSFC1(2)         --------->At4g35610
 
aatccatccttcaacttctccctcatcatcccccgtcgtcttcgtcttcatccaagaaggaaggatctttcacacgtacgacttcttcagcttctatcac  26943600
                                                                     <-------GAMYB
                                                                    --------->MYB52(2)
                                                           <---------MYB46(2)
                                                           <---------MYB55(2)
                                                           --------->MYB46(3)        <---------ETT(1)
                                ------>ZmHOX2a(1)          <---------MYB52(2)        ----------->HVH21
                                =======================HOX2a_HOX2a  <---------MYB46(3)
                            <---------RAP2.6(3)            <---------MYB111(2)   --------->At4g35610
                            --------->ORA47(1)             <---------MYB111(1)   --------->GLK1(1)
                            ------>NtERF2                  --------->AtMYB61     <---------At4g35610
                           --------->DEAR3(1)             --------->ANAC58       <---------HSFC1(2)
                        --------->ANAC46        ------>ZmHOX2a(2) <---------MYB52(1) --------->DEAR3(1)
                        --------->ANAC58  ----------->RAV1(2)--------->MYB52(1)  <---------GLK1(1)
                     <---------SPL7       <---------At4g35610------>MYB46(1)     <---------ZAT2
      --------->MYB52(1)--------->ANAC58  --------->At4g35610------>MYB83        --------->ZAT2
-----YAB1        ------>ZmHOX2a(1)   --------->bZIP60(2)  --------->ANAC58     <---------PCF2-------
>>>>>>>>>>>LFY   <-----------RAV1(1) --------->ANAC46  --------->At4g35610  <---------ANAC46 <------
-->YAB1        ----------->RAV1(2) <---------ALFIN1 ---------->DOF2 --------->MYB55(2)------>NtERF2
 
cattgtggctaatggttatcctgtggcacgccgtccttccacttcatctgatcgaaacagcaccaaaccggtcgttgttgtgggagctccgaccagaaat  26943700
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AGI:  At1g71520.1   
Description:  AP2 domain-containing transcription factor, putative. Identical to Ethylene-responsive transcription factor ERF020 (ERF020) [Arabidopsis Thaliana] (GB:Q9C9I8); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G22810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16308.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471)
Range:  from: 26942187    to: 26942768    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g71528.1   
Description:  other RNA
Range:  from: 26943224    to: 26946614    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g71530.1   
Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G33770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46874.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245)
Range:  from: 26943229    to: 26946614    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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