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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
DOF2
<------
<---------
At4g35610
-------
-------
HSFC1(2)
<---------
At4g35610
--------->
ZAT14
------>
HSFC1(2)
--------->
At4g35610
<---------
ANAC58
<---------
ZAT18
----->
ANAC58
--------->
MYB59
<---------
ANAC46
<---------
At4g35610
----->
ANAC58
<---------
ZAT6
<---------
ANAC58
<---------------
AtSPL8
-
agcttctgctttcttagagttagctctccaacttcattctgtagcttgggaatgtaagtgattacattatcgattatagatggtgcagaccatttcttct
26840600
<---------
ICU4
--------->
YAB1
<---------
YAB1
<---------
MYB46(2)
<---------
MYB59
--------->
DAG2
<---------
MYB111(1)
---------->
DOF2
--------->
ANAC55(2)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
KAN4(2)
--------->
YAB1
--------->
YAB1
--------->
ICU4
<---------
ATHB12
--------->
ANAC58
--------->
YAB1
>>>>>>>>
---
At4g35610
--------->
ANAC58
----------->
GT1
>>>>>>>>>
TBF1
-->
At4g35610
----------->
GT1
---------->
DOF2
------>
MYB83
--------->
YAB1
--------->
TOE2(3)
-------->
WOX13(1)
--------->
MYB46(3)
------>
MYB46(1)
----------->
GT1
>>>>>>>>>
TBF1
<
gccaatcagcaagaaaagttatatatagctcaacaacaagcagaacatacctaacttgtaataataacagtgaaaacaaaacctttgaagaagaagaaga
26840700
<-----
------
------
<--------
--------->
ANAC46
--------->
ARR11(3)
--------
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
AtMYB61
---------
<-----------
RAV1(2)
--------->
TOE2(3)
<----------
DOF2
<---------
At4g35610
>
TBF1
<-----------------------
TaNAC69(2)
------>
ZmHOX2a(1)
--------->
At4g35610
-----------
HVH21
--------->
MYB59
------>
ZmHOX2a(1)
<---------
ZAT6
<----------
DOF2
atggtcaggaagaagagtgccaagagtgaggtaagaggcatgaagtctcatcctccttaaacgctccttagcgttatggtcttgtttctttgctgcacca
26840800
----
ALFIN1
<---------
WOX13(1)
<----------
DOF2
--->
ZAT6
--------->
ANAC58
--------->
ATHB12
<---------
ZAT14
--->
AtMYB61
--------->
ANAC58
<----------
DOF2
<---------
O2
--------->
ZAT14
-
ALFIN1
--------->
AtLEC2
<---------
DAG2
--------->
O2
<---------
At4g35610
<
--->
RAV1(1)
-------->
P
<---------
ARR14(2)
<----------
DOF2
--------->
At4g35610
=
>
REM1(1)
------->
TEIL
<----------
DOF2
<---------
YAB1
------>
ZmHOX2a(1)
<---
ctacttgagccatcaacctcatgcaaaactggttctttcctttttctttgtgattgacaagtgtccttctctgcagactctttctcaacgattgtttctg
26840900
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
--------->
CCA1(2)
--------->
GLK1(1)
<---------
GLK1(1)
<-------
GAMYB
<------
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ZAT14
--------->
ARR14(1)
<------
NtERF2
<---------
ARR14(2)
<---------
ANAC46
--------->
ARR11(1)
------>
NtERF2
<
------
ZmHOX2a(1)
----------->
GT1
--------->
ATHB12
--------->
RAP2.6(3)
<
=======================
HOX2a_HOX2a
<---------
YAB1
--------->
ANAC46
--------
--------
RAV1(2)
<------
ZmHOX2a(2)
<---------
At4g35610
--------->
AHL20(2)
<----------
ID1
<
caggagggatatgcaagcgatcatggagtaaacttgatattgaagtctgatgattcggttgagaagacat
atatatacgacggcaagaggaacaaaaaag
26841000
<---------
ALFIN1
------>
MYB46(1)
<-
------>
MYB83
----
-------->
P
<---------
ICU4
------>
ZmHOX2a(1)
--------->
YAB1
<---------
ZAT18
<---------
MYB52(1)
<---------
AHL20(2)
<---------
YAB1
---------
ANAC46
--------->
AtMYB61
--------->
AHL20(2)
<---------
TOE2(3)
---------
---------
ANAC58
--------->
MYB46(3)
--------->
ICU4
--------->
TOE2(3)
<---------
ARR11(3)
-->
DOF2
<----------
DOF2
------>
ZmHOX2a(1)
<---------
ATHB12
<---------
AHL20(2)
<---------
YAB1
---------
ANAC58
<---------
MYB55(2)
------------>
CBF
--------->
TOE1(3)
--------->
ARR11(3)
aggcttgtgctctttcctaccaccgatggtcctaagttaaacttagaactgcaattaatgtctaaaaccctaattaagttaacaagatgatcatgacaat
26841100
----------->
HVH21
<-----
--------->
MYB46(3)
--------->
At4g35610
--------->
TOE1(3)
----------->
TGA1
<-----------
GT1
<---------
At4g35610
---------->
DOF2
-------->
P
--------->
At5g28300
<---------
ICU4
------->
TEIL
<-----------
TBP
--------->
TOE2(3)
----------->
RAV1(2)
<---------
YAB1
---------->
DOF2
-
--------------
AGL15
<---------
WRKY38(1)
<---------
AHL20(1)
------------>
CBF
------
----->
YAB1
--------->
DAG2
<---------
WRKY12
--------->
AHL20(1)
------------>
CBF
--------->
At4g35610
--->
CBF
<------
ZmHOX2a(1)
---------->
DOF2
----------->
GT1
<---------
TOE2(3)
<---------
ATHB12
<-
gatatatataggaaaaggtagccttagcctaaagtcaacccctgacgcagtaatatataacaaattaagaatggcacaatgcaatgaagctgcagaatta
26841200
<---------
YAB1
<---------
ARR11(3)
-
<------------
CBF
--------->
ANAC58
-
<---------
TOE2(3)
----------->
HVH21
<
<---------
YAB1
<-----------
HVH21
-----
--------->
AHL20(2)
--------->
ANAC58
<----
--------->
YAB1
<---------
ANAC58
--------->
bZIP60(2)
<----
----
AHL20(2)
<---------
AHL20(2)
<-----------
RAV1(2)
--------->
ANAC58
-----
-------->
TOE2(3)
<---------
ANAC58
<-------
TEIL
--------->
ANAC46
<-----
--->
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
--------->
ANAC58
------
--------
ICU4
----------->
GT1
--------->
AHL20(2)
--------->
LBD16
----------->
GT1
<-----
aacattaatattgaatattaaaatgcttgaagattaaaaaataaagaggttcagggaatcacaggtcacagcaagttattagaagagaaatggtcgtata
26841300
-------->
ZAT14
-------->
At4g35610
---------
ZAT14
---->
ARR14(2)
-----
ARR11(3)
-----
ARR14(2)
---->
ARR11(3)
--------->
ANAC58
----
GLK1(1)
--------->
ARR11(3)
--->
GLK1(1)
--------->
YAB1
--------->
ANAC58
----
CCA1(2)
--------->
GLK1(2)
---------->
DOF2
----------->
GT1
<------
ZmHOX2a(1)
tctgcagtacataagaatttgtaaatgataagacctagagcgagcgagccagagaagagcaaaaacagttttatttgttttagagaagaggaaaacttgt
26841400
<-------
TEIL
<---------
MYB59
--------->
ANAC55(2)
<---------
ANAC58
<---------
ANAC58
<----------
DOF2
--------->
ARR14(2)
----------->
RAV1(2)
<--------
P
<---------
ARR14(2)
-------->
P
<---------
At4g35610
<----------
DOF2
<---------
MYB46(3)
<------
ZmHOX2a(1)
<-----------
GT1
------>
ZmHOX2a(1)
<---------
AtMYB61
<-------
gagacaggatttacagaggctttcttacctgattcatctcctccgatgttctacttctttgtaagaatgcagaggttgccatagttttttcttctaatgt
26841500
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AGI:
At1g71200.1
Description:
basic helix-loop-helix (bHLH) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO24674.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598)
Range:
from: 26840203
to: 26840970
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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