Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <------ZmHOX2a(1)             <-------TEIL                                         <---------ANAC58            <--------P                                            <---------ANAC46          ----------->GT1                                  <-----------HVH21         --------->DAG2                              <---------ARR14(2)  --------->ALFIN1---------->DOF2        --------->DAG2                               --------->ARR14(2) <------ZmHOX2a(1)--------->MYB52(1)       ---------->DOF2                           <---------LBD16  <---------ANAC58  <------ZmHOX2a(1)  >>>>>>>>>TBF1                            ----------->ARR10 --------->ATHB12 <------ZmHOX2a(1) <----   agaagaagaaaaaggtagattagtagtcaccttgagaaacagggagagatttgtggaaacgggtcattgagtgaggaggaggaagaggaagtaaaggagg  26108400                                         <------ZmHOX2a(1)                                      <------ZmHOX2a(1)                                    --------->ALFIN1                                   <------ZmHOX2a(1)                                 --------->ALFIN1                              --------->ALFIN1                             xxxxxxxxxxxxxxxx>smallRNA(se3)                             <------ZmHOX2a(1)        ---------->DOF2    --------->ALFIN1     <------ZmHOX2a(1)    <------ZmHOX2a(1)                                        --------->YAB1  <------ZmHOX2a(1)     XXXXXXXXXXXXXXXXXXXX>MIR854A-E                       --------->YAB1  -------- --ZmHOX2a(1) <------ZmHOX2a(1) <------ZmHOX2a(1) ----------->GT1XXXXXXXXXXXXXXXXXXXX>MIR834 <-------   aagaggaggagaaagaggaagaagatgaggaggaggaggaggaggaagagagttgtgaaattgagagtagaagtagcagtagtaatagtagtagtagcta  26108500                                                                    <------MYB46(1)      --------->CCA1(2)                                             <------MYB83     --------->ARR11(3)                                            <---------AtMYB61     --------->ARR14(2)                                          <---------ARR14(2)     <---------ARR11(3)                                          --------->ARR14(2)         <--------     <---------ARR14(2)       <---------AtMYB61                 <------ZmHOX2a(1)           <--------    <---------HSFB2a(1) <---------TOE2(3)                    <------ZmHOX2a(1)              <--------   ----------->ARR10    <---------TOE1(3)             ---------->DOF2                --------->YAB1 ->STY1(2)    ----------->RAV1(1)          ----------->GT1 --------->ALFIN1         <---------YAB1 --STY1(2)<---------TOE2(3)<---------ARR14(2)    ---------->DOF2--------->ATHB12    --------->ICU4   gaaggaagatttgaggcaacaagattgaggttttggtgagaagaagggtgcaaaagaaaaggaggaggattggtttgaacatggtgatgataaggcttgt  26108600                                                     --------->ICU4                                                   --------->YAB1                                                  <---------YAB1                                                --------->YAB1                                        <------MYB83 <---------YAB1                        --------->DAG2                                        <------MYB46(1)                                 <------ZmHOX2a(1)              --------->ATHB12         <---------------AtSPL8                   --------->At4g35610            <---------------AGL15    <-------GAMYB--------->ICU4                <---------At4g35610       --------->ALFIN1             --------->MYB111(2)                         --------->ZAT2 -ANAC46    --------------->AGL15   <---------MYB46(3)  --------->ICU4          <---------ZAT2  ----- -ANAC58   <-----------------AGL1   --------->MYB55(2)  <---------YAB1        <---------RAP2.6(2) -ANAC58   <-----------------AGL3   --------->MYB52(2)--------->YAB1     <---------AtLEC2 ---------->DOF2   ggagaagaggtgttcttgatttggaactagggatgtgtttgttggtactgtgatgatgatgatgagttttttcttccatggctgctgagaggaaaaggag  26108700                                                                          >>>>>>>>>TBF1                          ---------->DOF2                               ------------------------>ANAC81                     <----------DOF2                                   >>>>>>>>>TBF1                    <---------ANAC58                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <---------MYB46(3)                                    >>>>>>>>>TBF1  >>>>>>>>>TBF1              <-----------RAV1(1)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <----------DOF2                --------->At4g35610   >>>>>>>>>TBF1  >>>>>>>>>TBF1  ------         --------->ARR11(3)           --------->DAG2            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------ARR11(3)    <----------DOF2 ---------->DOF2>>>>>>>>>TBF1  >>>>>>>>>TBF1   -------- ---->At4g35610     <---------ANAC58 ---------->DOF2         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ctacagagagagacctttgttggctttggaaagctttggaaaagcagaagaaagagagagagaagaagaagaagaagaagaagaagaagaagagagtgtg  26108800                                                                     <---------ZAT18                                                                ---------->DOF2                                                               <---------WRKY12                                                               <---------WRKY38(1)       <---------AHL20(2)                             *TSS                          --------->DAG2                --------->AHL20(2)   <---------YAB1 ---------->DOF2                        ---------->DOF2                 <---------AHL20(1) --->ALFIN1     --------->CCA1(2) <------------CBF  <-----------RAV1(2)      <----------DOF2   <----- ->ALFIN1    ----------->GT1---------->DOF2       <-----------HVH21  --------->ZAT18<---------AHL20(2)   ggtttatgagagagagagataaaagaggcagaaagggattgtctgagtttttggtcagggaaaggtcaaagtccccttccttttgttttattttattttt  26108900                                                                      --------->AHL20(2)          --------->YAB1                                         --------->AHL20(2)         --------->ICU4                                          <---------AHL20(2)       --------->YAB1                           <---------AHL20(2)---------->DOF2   <------NtERF2                              <----------DOF2 --------->YAB1  ------>NtERF2  --------->ICU4      --------->ICU4          <---------ATHB51                <------- --------->RAP2.3(3)----------->GT1--------->YAB1            <---------ATHB12           --------->AHL20(2) ------GT1<---------ICU4      <---------At4g35610            --------->ICU4           ----------->GT1   ctgcccccaaaataatgaaatgatgttatttatgctgtcataaataagctttaattgttggcaataataaaagaaaataggcctataaatgtaaataact  26109000                                          --------->ANAC58                               --------->ARR14(2)                               <---------ARR14(2)                               --------->ARR11(3)                               <---------ARR11(3)   --------->ZAT18                              <------ZmHOX2a(1)     <---------ZAT14              <---------YAB1<---------ANAC46--------->TOE1(2)     --------->ZAT14        <---------TOE2(3)  <---------ANAC46              --------->YAB1         -     <---------ZAT14   <---------MYB46(3) --------->ANAC58               <---------AHL20(2)    ------   <---------YAB1  --------->ATHB12     ---------->DOF2      --------->ARR11(3)              <------- ----GT1    <---------ZAT6  <---------TOE1(3)--------->CCA1(2)       --------->AHL20(2)--------->ICU4   atattagtatagtagtataaatgatttgttgaggatattgagaaaagctacgagtaaactatagttcttgattatataatcgcaatgtgatttttaagaa  26109100                           <-----------ARR10                                                        <                           --------->GLK1(2)                                                        <                    <------MYB83                                                                    <                    <------MYB46(1)                                                                 <   --------->ATHB12 <---------ANAC46          --------->ARR11(3)                              <------   <---------ICU4  <---------MYB46(3)         <---------ARR11(3)                         <----------DOF2  --------->ICU4   --------->MYB46(2)  <---------ARR11(3)                               -------------  <---------ZAT6--------->ATHB12       --------->ARR11(3)                              <------------- ---------->GT1--------->ICU4         --------->YAB1                        --------->ATHB12  <------ ---->DOF2     <---------YAB1    --------->MYB46(3)                    <---------YAB1--------->ANAC58 --TOE2(3)    <---------TOE2(3)--------->MYB52(1)<----------DOF2   ------->GAMYB     --------->ANAC58   agtagtgattaccgataatgtttggtgagaatctaaccgatgatattagacctttatatgttttttcaacagcatgaatgatttgataagccttttatgg  26109200                                                                                                    < ---------ANAC46                                                                                ----- ---------ANAC55(2)                                                                             ----- ---------ANAC58                                                                                <---- ---------ANAC58                                                                                <---- ---TOE1(3)                                 <---------AHL20(2)   <---------AHL20(2)         --------- -->AGL15                                  --------->AHL20(2)    ---------->DOF2<---------PCF5 ------ ----AGL3                         ------->MYC3                  --------->AHL20(2)      <---------YAB1 ---TOE2(3)   <---------MYB46(3)  <-------MYC3          --------->ZAT14   --------->ATHB12  <--------   tttcgtaaaccccaagttgttgttgttgttgttacacatgttttataaaatggaccaatacactcattaaatcgaattatggggaccattctgtttaatt  26109300  Previous    Next  AGI:  At1g69440.1    Description:  AGO7 (ARGONAUTE7); nucleic acid binding. similar to AGO1 (ARGONAUTE 1) [Arabidopsis thaliana] (TAIR:AT1G48410.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72762.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68471.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64744.1); contains InterPro domain Argonaute and Dicer protein, PAZ (InterPro:IPR003100); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Stem cell self-renewal protein Piwi (InterPro:IPR003165); contains InterPro domain Region of unknown function DUF1785 (InterPro:IP Range:  from: 26104722    to: 26108829    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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