Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                         ---------->DOF2                     <-------                                                    ---------->DOF2                       <---------ANAC46                    <---------------AGL15     <---------AHL20(2)                        <---------ZAT18                    --------------->AGL15   <---------CCA1(1)                           --------->ZAT14           ----------->GT1--------->DAG2    <---------RVE1(1)                           <---------ZAT14          ----------->GT1---------->DOF2   --------->ARR11(3)                       --------->ATHB12      --------->MYB52(1)<---------AHL20(2) <---------GLK1(2)                      --------->GLK1(2) ---------WRKY38(1)================================================================================== ---------WRKY45   ----------------->AGL3  <---------ARR11(3)                    --------->YAB1   agtcaacttaagggggaaaaaactatataaagtagcagattaaaagatttttttaaaagtaaagaattagttgaagttaccaagaatcagtggagtattc  25989600          <---------MYB52(1)         <---------DAG2        ----------------->AG        ----------------->AGL1        <---------------AGL15        --------------->AGL15                                        <----------DOF2       ----------------->AGL1                             <---------ARR11(3)                     <---       ----------------->AG                               --------->ARR11(3)                     ----       <-----------------AGL1                            --------->GLK1(1)                       ----      <-----------GT1  <----------ID1                    <---------GLK1(1)                  =========      <-----------------AGL1                        <---------ZAT14  ================================ ->ARR14(2)       --------->At4g35610     <-----------HVH21        --------->At4g35610<---------ARR11(3) --ARR14(2)       <---------At4g35610   --------->At4g35610 ------>ZmHOX2a(2)---------->DOF2<-------- =======================MADS_MADS       <---------At4g35610<------ZmHOX2a(2) ========================   gaagagttttcccttatgggagaagacaacaagagcaacttcagcatcacagagaacagagatctcatgagctttcttcaaaagaccagctcttcttttc  25989700       <---------O2       --------->ANAC55(2)       --------->O2       <---------TGA1a                                                            --------->HSFC1(2)   <-----------HVH21------>ZmHOX2a(2)             ------>MYB46(1)                 <---------HSFC1(2) ------HSFB2a(2)    =====================HOX2a_HOX2a                              --------->HSFB2a(1) ----->HSFC1(1)   --------->ARR11(3)              ------>MYB83                    <---------HSFB2a(1) ----->HSFB2a(2)  <---------ARR11(3)              -------->P           --------------->AGL15 ================bZIP_DOF                    ------->TEIL              ------>ZmHOX2a(1) ================bZIP_DOF                   <-----------GT1            <----------DOF2 --DOF2<---------ANAC55(2)        ------>ZmHOX2a(1)                    <---------------AGL15   ------ ================bZIP_DOF     --------->ARR14(2) <---------ALFIN1    ------>ZmHOX2a(2)    --------->ZAT6   gagaatgtcacttgtctattgatcttgttctctatcctcttcaattgaaccctaccccttcccatttttgatccttttttaagaaacttcttactctaaa  25989800                                                                                 <------ZmHOX2a(1)                         --------->YAB1               --------->At4g35610  --------->WOX13(1)    ------>MYB83    --------->LBD16           ---------->DOF2           <-----------------AG<--------    ------>MYB46(1)--------->ANAC58        --------->CCA1(2)            <-----------------AGL1      -  <---------MYB59  --------->ANAC58       <---------ARR11(3)            ------->TEIL     <-----------GT1 ---->DOF2  ---------->DOF2               --------->ARR11(3)  <----------DOF2  --------->MYB59  <----   agaaccaaacaaaacaaagacccccaataagaaactacaagagagatataaagaagagctcagactttggtatgaaccaattaggaaagtttttctttct  25989900                                   <----------DOF2                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                --------->ARR14(2)                                <---------ARR11(3)                          --------->DAG2 <----------DOF2                --------->ARR11(3)                          *TSS --DOF2 ---------->DOF2         <---------ARR14(2)              <---------MYB46(3) -------->TOE2(3)           <---------LBD16        --------->CCA1(2)       ---------->DOF2 ------DOF2                <---------LBD16      ----------->ARR10 <----------DOF2---------->DOF2   ttcctttataaaaagacttgtgtttgagtctcgggatctttatttatggagagatttgggtaagagtggttttagggaaaagctaaagctggtttctctt  25990000                                     --------->ETT(2)                                <---------ANAC55(1)                   <---------DEAR3(2)                                <---------ANAC58                     <---------ANAC58                                --------->ANAC55(2)                  <---------ANAC58             ---                                <---------ANAC46                     <---------ANAC46            <---                            <---------GLK1(1)                        --------->ETT(1)          <-----                           <---------ARR14(2)                      <-----------HVH21           ------                           --------->ARR14(2) <------------CBF    <-----------RAV1(1)    <---------AHL20(2)                          <------ZmHOX2a(1) <---------YAB1--------->TOE2(1)          <---------AHL20(2)                     <----------DOF2 <---------ETT(2)     --------->TOE1(1)         --------->AHL20(2)               <---------MYB46(3)  --------->REM1(2)  --------->ARR11(3)            <---------AHL20(2)         ----------->RAV1(1)--------->GLK1(1)--------->ATHB12   <---------ICU4 <---------ARR11(3)----         <<<<<<<<<<<<<<<<<LFY   <---------ANAC58      <---------ARR11(3)  <-------TEIL--------->YAB1        <<<<<<<<<<<<<<<<<<<LFY  <---------AtLEC2     <---------CCA1(2)<---------MYB46(3) --------->AHL20(2)   gtttgcaaaaaccacagtggtttctttaggatttgcgtgtcgacttctcattggtatatctcgtactaatgtcgggtccatgattttttaataaaactgc  25990100                                                                         <<<<<<<<<<<<<<<<<LFY                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                      --------->ANAC46                                                                     --------->SPL7                                                                     --------->SPL1(2)                                                                    <<<<<<<<<SPL4                                                                    <<<<<<<<<SPL5                                                                 <---------------AtSPL3                                                                 <---------------AtSPL8    ==========                                                               <<<<<<<<<<<<<<<<<<<SPL4     --------->TGA1a                                                               <<<<<<<<<<<<<<<<<<<SPL5     <---------TGA1a                                                          ----------->GT1>>>>>>>>>>>>>>>>>LFY                                        <---------ANAC46  --------->ANAC55(2)              <---------O2                                        <---------O2      --------->ANAC58 <---------ALFIN1--------->O2                                   <---------O2           --------->ANAC58--------->MYB46(3)                                   --------->O2           <---------ANAC55(2)           --------->LBD16 --->NtERF2                        <---------TGA1a      <--------P  <<<<<<<<<SPL1      <---------HSFB2a(2) ------ZAT18                <---------YAB1 --------->REM1(2)   <<<<<<<<<<<<<<<<<<<SPL1 --------->HSFB2a(2) ----LBD16<---------YAB1 <---------YAB1 --------->O2    =============================================MYC_MYB --->At4g35610    <-----------GT1  --------->TGA1a--------->CCA1(2)<---------SPL7   ------>ZmHOX2a(1) ----->LBD16    --------->AHL20(2) ==============================MYC_MYB<<<<<<<<<<<<<<<<<<<LFY<------   ggacttaaaaatatgaaaataaacaatttgattatcgacgtctcgtgaagagaaatgggtaagtaacattgtacggaccactggtccttccccaagtgtc  25990200                        --------->GLK1(1)                     ----------->ARR10                   --------->LBD16                  <---------ANAC46                  <---------DEAR3(1)                 <---------------------WRI1                 --------->ATERF1(1)                 <---------LBD16                 <------NtERF2                <---------RAP2.3(1)                <---------ERF1                ------>NtERF2                <---------RRTF1(1)                                --------->CCA1(1)               <---------ATERF1(2)      --------->ANAC58     --------->TOE2(3)               <---------DEAR3(1)       --------->ANAC58     ------->GAMYB               <---------RRTF1(3)       --------->ANAC46     --------->YAB1               <---------RAP2.3(2)   ------>ZmHOX2a(2)      --------->MYB46(3)               <---------RAP2.6(2)  <------ZmHOX2a(2)      ------>MYB83               <---------RRTF1(2)   --------->CCA1(2)      -------->P               --------->ATERF1(2) --------->AGP1--------->ARR14(2)<---------ARR11(3)               <---------RAP2.3(3) <---------ARR14(2)      ------>MYB46(1)                  <--------              --------->RAP2.6(3)  --------->ARR11(3)    --------->AtMYB61                 <---------            ----------->HVH21      <---------AGP1<---------ARR11(3)--------->ARR11(3) --------->AHL20(2)         <---------AtLEC2          --------->ARR14(2)    <---------MYB111(1)    <-----------GT1     <----------DOF2<------NtERF2  <---------ARR11(3)   --------->DEAR3(2)  --------->AHL20(2) ===============bZIP_DOF<---------GLK1(1)        --------->GLK1(2)--------->RVE1(1) <----------DOF2 -----HVH21 --------->WRKY12      <---------CCA1(2)     --------->MYB46(3)  <---------AHL20(2)   accttcgctttgcattgacggcggagatttccctgtagatctacgaaacaaaatctgaaccaaccaaaatatctatttttaatttccttttattaacatt  25990300                                                                           <---------AHL20(2)                                                                          --------->AHL20(2)       --                                                                       <---------YAB1             ---                                                                      --------->AHL20(1)          <--                                                                      <---------AHL20(2)         <---                                                                      <---------AHL20(1)  -----------                                                                     --------->YAB1   --------->ZAT2                           --------->HSFB2a(2)                       --------->AHL20(2)  --------->At5g28300                <-----------GT1               <---------MYB52(1)    <---------YAB1    --------->At4g35610    <-----------GT1     <----------DOF2       <----------DOF2   <---------ANAC58      <---------ZAT2 -TOE2(3)       --------->ZAT6    --------->DAG2                <---------ANAC58      <---------At4g35610 --GT1        <-----------GT1     <---------TOE2(3)        --------->ARR14(2)<---------TOE2(3)   ----   tctctattaccctattttacactattcttttggaataaggtgagaaccctttgttttatcaaatttgcttattatatttaatgttctcagctgtaacagt  25990400                                                                                       --------->GLK1(1)                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)                                                                                  <---------LBD16                                                                                --------->ETT(2)                                                                                <---------ETT(2)<----          --------->ARR11(3)                                                    <---------WRKY12<---- --------->GT1                                                                  --------->DEAR3(1) ------------>AtSPL3                       --------->ZAT2                       <---------DEAR3(1)<-- -------------AtSPL8                       --------->At4g35610                  ----------->HVH21 === ------ZAT14     <----------DOF2           <---------At4g35610               <---------ANAC46-------- >HVH21   <---------ARR11(3)               <---------ZAT2                    <---------ANAC58-------- ----->ZAT14 <----------DOF2              <---------AGP1                     <---------ANAC58--------   gaagtacaaatagacctttcttttggcaatagatgtttttggtagagctgagaaccaattgacaactgtgtaatgtattgcgtcgacggatttgtacgca  25990500  Previous    Next  AGI:  At1g69120.1    Description:  AP1 (APETALA1); DNA binding / transcription factor. Identical to Floral homeotic protein APETALA 1 (AP1) [Arabidopsis Thaliana] (GB:P35631;GB:Q8LA98;GB:Q9LQA8); similar to CAL (CAULIFLOWER), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G26310.1); similar to MADs-box protein [Citrus sinensis] (GB:ABM67697.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 25985993    to: 25989976    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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