Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->AtLEC2          ------>MYB83                                         --------->TOE2(3)          ------>MYB46(1)                                 --------->At4g35610         ----------->RAV1(1)                         <------MYB46(1)  <---------ZAT18                                    <------MYB83                 <---------ARR14(2)  --------->ZAT14                                   <---------AtMYB61             --------->ARR14(2) >GT1   --------->AtMYB61               --------->YAB1    <---------At4g35610<---------ANAC46  <----- ------------TaNAC69(2)    <---------ANAC46         --------->MYB59 <---------ATHB12<-------TEIL    -   actgtgaacaccaacaatgcaaaatagttttgtataagtcaataacattttagtttggtctgctatctcaatctttgtattgtggattcgttgttacgac  25921600                                                                               >>>>>>>>>>>>>>>>>LFY                                                                               <<<<<<<<<<<<<<<<<LFY                                                                              <---------ARR14(2)                                                                      --------->YAB1      --------->ZAT14                <----------DOF2                                      <---------YAB1       <---------ZAT14            <---------RAP2.6(2)                         <---------TOE2(3)     --------->ARR14(2)            <---------ANAC46                         --------->AHL20(2)      --------->GLK1(1)       ----------->HVH21                <---------AHL20(2)       <---------ANAC46      <---------ANAC46     ----------->RAV1(2)               --------->AHL20(2)        ----------->GT1------------>CBF ----LBD16 <---------LBD16       ----------->GT1     <---------AHL20(2)    <---------GLK1(2) --------->TaMYB80           <-----------GT1  <-----------GT1 <---------YAB1<---------KAN4(2)   ggaaaatgcctgatgcggctatatgaaaatataactcgttataaaattttgccaaataaatgttatgatgtataatagaatatccaatggagtatagtga  25921700                                                                              <-----------GT1                                                                    <---------ANAC58                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                 --------->GLK1(2)                                                                --------->KAN4(2)                                                                <---------ARR14(2)                                         ------->GAMYB          <---------GLK1(2)                                        --------->ANAC58       <---------HSFC1(2)                                        --------->ANAC46       <---------HSFB2a(1)          <------ZmHOX2a(1)                 --------->ATHB12       --------->ANAC58       --------->HSFB2a(1)    ---------->DOF2               ------->TEIL---------->DOF2                     --------->HSFC1(2)   ------->GAMYB   tgaaacgatttttgacgaatgtttgagaaaaaagtcttaacaacgaaaccagaaatgttttaagaagattccttgttttcttacaacccaaagaggagac  25921800                              <---------HSFC1(2)                       <---------ANAC58                       <---------ANAC58                  <----------DOF2                                         --------->YAB1               --------->ANAC58                                     --------->GLK1(2)              <-               --------->ANAC58         --------->ANAC46           <---------GLK1(2)             ----       <---------GLK1(2)      --------->HSFC1(2)             <---------LBD16                  -------       <---------ARR14(2)    --------->ANAC58  <---------ZAT14    --------->HSFB2a(1)        <-------       --------->ARR14(2)    --------->ANAC58  --------->ZAT14    --------->GLK1(1)         ---------   acacacacagatttggaacgctttgacttgcaagcttcttctaagacactactctagtagtctctcggagattctatcttcactctctggtttattcaat  25921900       <------MYB46(1)       <---------MYB46(3)       <------MYB83      <---------AtMYB61     <---------MYB55(1)                          <---------ANAC58     <---------MYB52(1)                          <---------ANAC58     <--------P                              <------------CBF    <---------MYB52(1)                     <---------YAB1                                --------->ZAT14 ----------GT1                            <---------AHL20(2)                             <---------ZAT14 ----->AHL20(2)                      <---------AHL20(2)                      <---------ANAC58 -->WOX13(1)                <----------DOF2<---------AHL20(2)                <---------ANAC46 --AHL20(2)              <-----------GT1<---------YAB1                       <---------ANAC58 --->CBF           ------------>CBF<----------DOF2          <---------MYB46(3) <------NtERF2   taaaccggttggtttagttccatcaattttcttttctcttttatttttattgctagttttgtttgttattttgagaatggcgtcgaactactactctgtt  25922000                                                                      <---------YAB1                                                                      --------->At4g35610                                                                    --------->YAB1                                                                   <---------YAB1                        <---------ZAT2                            <---------ARR11(3)                        --------->At4g35610               <---------LBD16                --------->LBD16                  <--------P                <---------ANAC46--------->LBD16          --------->ARR14(2)    --------->ANAC58<------MYB83            <---------ANAC55(2)   --------->ARR11(3) <---------ARR14(2)    --------->ANAC58<------MYB46(1)      <---------MYB52(1)--------->ANAC46 <---------ARR11(3)   --------->DAG2 <<<<<<<<<MYB98 --------->YAB1         ------>ZmHOX2a(2)   --------->ARR11(3)  ---------->DOF2<-------GAMYB<---------GLK1(1)  --------->ICU4 ---------->TaMYB80  <---------CCA1(2)   cagataaagcaatgcattgggttgggagctagaaatcagagtcgttatgtgaagatgatccacgggaatatcatcagagctcttccatatccagagacgt  25922100                                                                                      <---------DAG2                                                                                   ------>MYB46(1)                                                                                   ------>MYB83                                                                                 --------->AtMYB61                                                                                 <---------MYB59                                                                                 ------->GAMYB      -                                                                               ------>MYB83         <                                                            --------->ALFIN1   --------->ANAC58------                             --------->DOF5.7(2)         ------>NtERF2         ------>MYB46(1) ------                            --------->TOE2(3)           --------->DEAR3(1)     -------->P      ------                        <---------ARR14(2)           --------->ANAC46  --------->GLK1(1)      <------                    ------->MYC3           <---------ALFIN1 <---------ZAT6     --------->ANAC58<-----                   --------->ANAC46 ---------->DOF2  --------->ANAC58  <---------GLK1(1)     --------                 <---------ALFIN1 --------->YAB1     --------->ANAC58 <---------GLK1(2)      <-------     <-----------GT1<-------MYC3<---------TOE2(3)   ------->TEIL--------->ETT(2)--------->MYB46(3) <-   ttttgtataacaacatcgtccacgcgtatgcgttaatgaaaagctccacttatgcacgccgagtgttcgacagaattccccaaccaaaccttttctcctg  25922200                                                                                                 <---                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              ------- -------->KAN4(1)                                                    ------>ZmHOX2a(1)       <------- ---------KAN4(1)                                              <---------HSFC1(2)            <------- >ZmHOX2a(1)                                                   --------->HSFB2a(1)           <------- --->LBD16                                                     --------->HSFC1(2)            -------- --->HSFB2a(2)                                                 <---------HSFB2a(1)    <---------ANAC46 ---LBD16                      <---------ANAC58           <---------HSFB2a(2)    --------->bZIP60(1) ----HSFB2a(2)                 <---------ANAC58           --------->HSFB2a(2)    <---------bZIP60(1) --->RAV1(2)             --------->ZAT2                <----------DOF2        <---------AtMYB61  <--- --LBD16     <---------At4g35610 <---------CCA1(2)  ------->TEIL     <---------YAB1   <---------O2<-- --------KAN4(2)      ---------->DOF2          ---------->DOF2 --------->At4g35610<-----------HVH21   gaacaatcttctcttagcttattcaaaagctgggcttatctcagagatggaaagtacctttgagaagcttcctgatagagatggtgtcacttggaacgtg  25922300                                    <---------At4g35610                              <------MYB46(1)                              <------MYB83                             <---------MYB46(3)                             --------->MYB55(2)                             --------->MYB111(2)                             --------->MYB46(2)                             --------->MYB111(1)                             <---------DEAR3(1)                            <--------P                            <---------MYB55(1)                           <---------ANAC58 ------ANAC58              <---------ANAC58 -MYC2                    --------->ATHB12 >MYC3                    <------MYB83<---------MYB46(3) -MYC3                    --------->MYB55(2) >MYC4                    <------MYB46(1) -PIF5                    <---------MYB46(3) >MYC2                   <---------AtMYB61 >PIF5                  <---------WOX13(1) <---------TOE1(3)       --------->ARR11(3) --HSFB2a(1)           <---------ARR14(2)  <---------TOE2(3)       <---------ARR11(3) --ANAC58         <---------ANAC58  --------->At4g35610      <---------YAB1                   <------ --ANAC58         <---------ANAC58  --------->ZAT2         --------->YAB1                     <------ ->HSFB2a(1)      <---------ANAC46  <---------ZAT2 --------->YAB1  <---------GLK1(2)     <---------ZAT6 ------ANAC58    --------->ATHB12 <-----------RAV1(2)     --------->ICU4   <---------At4g35610<------ -------YAB1 --------->ATHB12<---------AtMYB61    <---------YAB1  <---------RVE1(1)     <---------TOE2(3)   cttattgaaggctattcattgagtggattggttggtgcagctgttaaggcttataatacgatgatgagagatttttctgctaatttgactagggttacgt  25922400                                                                <------MYB46(1)                                                                <------MYB83                                                       <-------TEIL                                                     --------->ARR14(2)                                                     <---------ARR14(2) ---ANAC58                            --------->MYB52(2)--------->ATHB12 ---ANAC58            <---------HSFB2a(2)        <---------At4g35610 <---------YAB1          <------- ---ANAC46            --------->HSFB2a(2)  <---------LBD16    <-----------RAV1(2)        <---------CCA1(2)   tgatgacaatgttgaaactttcttctagcaatggccatgttagtttggggaagcagattcatgggcaggttatcaaacttgggtttgagtcttatctttt  25922500  Previous    Next  AGI:  At1g68920.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G26260.2); similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G26260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15348.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 25918675    to: 25921569    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g68930.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to Os02g0106300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045627.1); similar to hypothetical protein OsI_005347 [Oryza sativa (indica cultivar-group)] (GB:EAY84114.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 25921977    to: 25924208    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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