Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->TOE2(3)                             <---------ANAC58 --------ALFIN1              <---------ANAC55(1) ------->ANAC46              <---------ANAC58 ------ALFIN1                --------->ANAC55(2) ->GLK1(1)                   <---------ANAC46                                                     <-- -ARR11(1)    --------->At4g35610                       <---------CCA1(2)                         <-- -ARR14(2)    <---------At4g35610        <---------ALFIN1                    <---------AHL20(2)   <-- ---ARR10 --------->ARR11(3) <---------ANAC55(2)   <---------CCA1(2)       <----------DOF2       <--- >ARR14(2)<---------ARR11(3)<-----------------------TaNAC69(2) <---------TOE1(3)           ----------   cacccctctgaacatctgctaacattcaattacgtaaacaccctcacattttcatctcttatcttatggttttcatgctttaatttgaatttcaaaagta  25710100                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----      <---------ZAT14                                                                           ----- <---------ZAT14                                                                         <---------ANAC58 --------->ZAT18                                                                         <---------ANAC46 -------ANAC46                                                                           <---------ANAC58 -------ANAC58         <---------ARR11(3)                                               --------->MYB55(2) -------ANAC58   --------->YAB1                   <---------YAB1  <-------GAMYB         <---------MYB46(3) --------------------TaNAC69(2)      --------->YAB1<------ZmHOX2a(1)                --------->ATHB12 >DOF2--------->ZAT14  --------->ARR11(3)   <---------YAB1 --------->CCA1(2)       <---------YAB1   gcttgcactgcatagagagtcataagaccttggaatcaatgttgatatgatgaggattgagaaacgagcgttgaagaagaggtttgtcattgggtgagac  25710200          <---------ZAT14          --------->ZAT14        <---------YAB1      <-----------GT1  --------->AHL20(2)  --------->AHL20(1)  <---------AHL20(2)  <---------AHL20(1) ---->ANAC58                                                               <---------ARR14(2) ---->ANAC58                                                               --------->ARR14(2) -----ANAC55(2)        <---------TOE2(3)        ----------->GT1           --------->GLK1(1) ---->ANAC55(2)       --------->DAG2       ---------->DOF2                <---------GLK1(1) ---->ANAC55(1)      ---------->DOF2   ----------->GT1         <---------AtLEC2              -------- ------>GT1        >>>>>>>>>GATA-1    <---------ZAT6 --------->ICU4   ----------->GT1       ---------   gtaattaattactatactatagataaaggtgactaggtgagtggtaaaagtcgtaatattggaatgcatggatggcaaatcccatagaagaaaaaaaagt  25710300                      --------->LBD16 <---------ALFIN1                     --------->LBD16 <---------ALFIN1                    --------->HSFB2a(2)                    ----------------->AGL1                    <---------HSFB2a(2)  <----------DOF2                    --------->ANAC46                    ----------------->AG <---------DAG2                     --------->ANAC58      <--                   <---------LBD16  --------->LBD16                         --------->ANAC58      <-- ->DAG2      <------MYB83      <---------GLK1(1)                 <---------ZAT14      ------>ZmHOX2a(1) ->DOF2      <------MYB46(1)   --------->GLK1(1)                 --------->ZAT14  ------->GAMYB<-----   gtaagagagagaagttggtattcccgaagaaggaactccccaacttttgccaaaacaaaatgccaacttcactgaaacacacaacctccttcccctcatt  25710400                                                                        <----------DOF2                                                                        --------->TOE2(3)                                                                      <---------YAB1         <-----------GT1                                             <---------ARR11(3)     <----------DOF2                                                 --------->ARR11(3)            <-    <---------DAG2                           <---------ICU4         --------->YAB1              =====  ---------->ID1                     --------->AHL20(1)            --------->ICU4         ----------- -------ANAC58          --------->GLK1(1)<-----------GT1        --------->AHL20(2)        <---------YAB1 -------ANAC58  <----------DOF2      <---------AHL20(1)       ----------->GT1   ------->TEIL--------- ----CCA1(2)<---------CCA1(2)        --------->AHL20(2)     ---------->DOF2 <---------TOE2(3)   -----   tcttggccttttctctatcttttgagaaatctatacaaatattttactaatttctctcttgagaaagtaattatctttaatgtatttgttttataaaagc  25710500    --------->ZAT18    --------->ZAT14                                                      <---------YAB1    <---------ZAT14                             ----------->GT1        <---------ICU4    <---------ZAT18                          *TSS           --------->ZAT2 --------ZAT14           <---------DAG2    ---------->DOF2  <---------ZAT2 =================RAV <---------ALFIN1 --------->ANAC58     --------->At4g35610 >TBP ----------->RAV1(1)<----------DOF2 --------->ANAC46   <---------At4g35610 --------->ICU4 ------ ->DOF2            --------->ANAC46    --------->ANAC46 --------->MYB52(1)      <---------YAB1------- ------>RAV1(2) <-----------GT1        --------->ANAC58<-----------GT1 --------->YAB1<-----------GT1   ctggactgcaccagtttttttccaccactttctccaagaacacacaaaagttgaaaaataccagctcattcacttatgactcatgagtaacttcttcctt  25710600                                                             ------->TEIL                                  --------->ARR14(2)      <---------ANAC55(2)                     ---                                  <---------ARR14(2)      --------->ANAC55(2)         <---------TOE2(3) >ZmHOX2a(1)          <---------ANAC58             --------->ANAC46      --------->YAB1   ---------->TaMYB80 -->TOE2(3)           <---------ANAC58           --------->ANAC46    --------->ZAT6 ---------->DOF2   ataaattcaaattgttcacaacttccttgagttccatttccgaacacaaacacacatcatacgtatatttgtcactaataaacatataaaggaatatgag  25710700                                                                                             --------              <---------ZAT14                                                                --------             --------->ALFIN1           ------->GAMYB                                 <---------GLK1(2)             <---------REM1(1)        --------->ANAC58                              --------->DEAR3(1)      ----------->HVH21               --------->ANAC58                            <---------At4g35610  ----------->RAV1(2)         <---------TOE2(3)                                   --------->At4g35610  <---------At4g35610       ---------->DOF2                                       --------->LBD16  <---------ZAT2         --------->ANAC58       <-----------GT1                 <---------LBD16  --------->At4g35610    --------->ANAC46      --------->ZAT18                <---------ARR14(2)  --------->ZAT2         --------->ANAC58 <---------YAB1                      --------->ARR14(2) ------>GLK1(2)         <---------LBD16--------->MYB46(3)                 <------ZmHOX2a(2)  --------   aatcagctgcaacgggtgtagggttctacgcaaaggttgcaaccaagattgcaccattcgaccatgccttcaatggatcaaatccgcagactctcaagcc  25710800                                                                 ------>ZmHOX2a(1)    <---------ALFIN1                                    <---------ARR14(2)        <---------MYB52(1)   --------->ZAT14                                      --------->ARR14(2)       --------->LBD16 ->ANAC58                     <---------ETT(2)          --------->GLK1(2)       --------->LBD16     < ->ANAC58   <---------ANAC58 --------->WRKY18(1)--------->TOE2(3)--------->ICU4<---------LBD16   <--- ->ANAC46   <---------ANAC58<-----------HVH21<-----------GT1--------->LBD16 <---------SPL7  <--------   aatgctacactcttccttgctaagttctacggtcgagccggtcttcttaacctcatcgaatccggtcctgatcaccttcgtcccggtactgaattatctc  25710900                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                               <-----                                                                                            ------>ZmHOX2a(2)                                                  <---------------AtSPL8                   <------ZmHOX2a(2)                                                  <---------------AtSPL3                  --------->ARR11(3)                                              --------->AHL20(2)                          <---------ARR11(3)                                            ----------->GT1                               --------->AGP1                          <-------TEIL    <---------ANAC58                                <---------ARR14(2)                       ------->GAMYB      <---------ANAC58      ----------->HVH21         --------->ARR14(3)    <----------DOF2 --------->MYB52(1)    <---------ANAC46      ----------->TGA1          <---------ARR14(3)   <---------DAG2--------->ANAC46     <---------ANAC58       --------->DAG2               --------->ARR14(2) -----------GT1 --------->ZAT14       <---------ANAC58      ---------->DOF2              --------->GLK1(1) -------DOF2    <---------ZAT14     <---------ARR11(3)--------->ZAT14               <---------YAB1 <- ---GT1     <-----------GT1         --------->ARR11(3)<---------ZAT14    ------->TEIL    <---------GLK1(1)   ttttacctttttttttactacacaacggtccattgaattatcttgcgagtaaatagtacagaaaaagtgacgatgtattttggattatgagagatcttca  25711000  Previous    Next  AGI:  At1g68510.1    Description:  LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42). Identical to LOB domain-containing protein 42 (LBD42) [Arabidopsis Thaliana] (GB:Q9CA30); similar to LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) [Arabidopsis thaliana] (TAIR:AT3G02550.1); similar to unknown [Populus trichocarpa] (GB:ABK92498.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883); contains InterPro domain Protein ASYMMETRIC LEAVES (InterPro:IPR017414) Range:  from: 25710545    to: 25711918    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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