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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
<---------
AHL20(1)
<-
<---------
AHL20(2)
<-
--------->
AHL20(1)
<-
--------->
YAB1
<---------
--------->
AHL20(2)
--------->
YAB1
<---------
YAB1
---------->
DOF2
<---------
YAB1
<---------
At4g35610
---------->
DOF2
<-------
TEIL
<---------
YAB1
<-----------
GT1
------->
TEIL
--
agcattacaaaaagacgactattatattcatgagtcaaagtttataaatgaaattacgaataactatatatgagttttgttgaatctgactaataacatg
25569200
----------->
GT1
<---------
TOE2(3)
---------->
DOF2
--------------
AGL15
--------->
ATHB12
--------->
AHL20(2)
--------
DAG2
<<<<<<<<<<
WRKY63
--------->
ICU4
<---------
AHL20(2)
---------
DOF2
<---------
ATHB12
<---------
ICU4
--------->
AHL20(2)
--
GT1
--------->
ZAT14
--------->
YAB1
<---------
AHL20(1)
------------->
AGL15
--------->
AHL20(2)
<-----------
GT1
<---------
AHL20(2)
actttttaaagtatagtcaaatgatttttaatattactaaaaatgatttaactatatacaaattcaattttgtttttaaaaaacttgtcaatttaattac
25569300
<---------
AHL20(1)
--------->
AHL20(1)
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
--------->
YAB1
<--------
ATHB1
<--------
HAHB4
--------->
ATHB51
<---------
ICU4
----------->
GT1
<---------
ATHB51
--------->
ARR11(3)
<---------
YAB1
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(1)
--------->
MYB46(3)
<---------
AHL20(1)
<---------
ARR11(3)
--------->
ANAC46
--------->
AHL20(2)
--------->
AHL20(1)
<---------
ARR14(2)
--------->
AHL20(1)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
GLK1(2)
--------->
ICU4
<---------
AHL20(1)
<---------
CCA1(2)
<---------
ARR11(3)
<---------
ATHB12
----------->
GT1
<-----------
GT1
--------->
ANAC58
--------->
ARR11(3)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
ANAC58
----------->
ARR10
------------>
CBF
agaaactatgactgtgaaaatatttttttcaaactgtatatccagccactaggtgtttgataagattttgaaaaatataatttcaataattatattttag
25569400
<---------
AHL20(1)
--------->
AHL20(2)
<---------
ARR11(3)
--------->
ICU4
<---------
AHL20(2)
--------->
ARR11(3)
----------->
GT1
<---------
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(2)
--------->
ATHB12
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<---------
AHL20(1)
<---------
YAB1
---------->
DOF2
<-------
TEIL
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<---------
WOX13(1)
<-----------
GT1
<---------
AHL20(2)
--------->
ICU4
--------->
AHL20(1)
<------------
CBF
<
acttaatatccatttttaaaaaataaattagaaggtcaaaatgatgaattaaaatttattcagaaagacattaattgatacatatatattcttcatacgt
25569500
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
<---------
ZAT18
----------->
HVH21
--------->
ZAT18
<---------
AHL20(2)
<--------
--------->
TCP16(2)
----------->
TBP
---------
------------>
CBF
<---------
TCP16(1)
------>
ZmHOX2a(1)
--------->
TOE2(3)
---------
YAB1
<---------
PCF5
--------->
TOE2(3)
<----------
DOF2
<---------
ATHB12
ctattatttgcaatgtatgacttatttgggtccactatttctatccatccttatatatatgaccacgcattagtatttctttatctcaacttaatcatct
25569600
--------->
ARR11(3)
<---------
ARR11(3)
--------->
YAB1
<---------
AHL20(2)
<---------
At4g35610
<---------
AHL20(2)
<---------
ICU4
--------->
ICU4
<---------
AHL20(1)
<------
ZmHOX2a(2)
--------->
At4g35610
--------->
YAB1
=============================
HOX2a_HOX2a
<---------
ATHB12
--------->
ARR11(3)
<---------
At4g35610
-
ICU4
--------->
WOX13(1)
<---------
ARR11(3)
------>
ZmHOX2a(1)
<-----------
GT1
>
YAB1
------------>
CBF
--------->
GLK1(1)
----------->
ARR10
<---------
YAB1
------>
ZmHOX2a(1)
tcttaaaccctcaatcatatatttttgtgaaaatttacagagatc
atggctggatgcttagttcctgaatgtgctgatgatatttccatcctgctaatcg
25569700
<---------
ICU4
--------->
ATHB51
<---------
YAB1
--------->
LBD16
--------->
ANAC58
--------->
ANAC58
<---------
LBD16
------>
MYB46(1)
-------->
P
--------->
AtMYB61
<---------
MYB55(2)
--------->
GLK1(2)
---------->
DOF2
------->
GAMYB
--------->
DAG2
<---------
MYB59
---------->
DOF2
--------->
MYB46(3)
<---------
CCA1(2)
--------------->
AGL15
<---------
MYB111(1)
<---------
ANAC58
<---------------
AGL15
<---------
MYB111(2)
--------->
WOX13(1)
----------------->
AGL1
--------->
MYB46(3)
----------->
HVH21
<---------
ANAC58
--------->
REM1(1)
----------->
GT1
------>
MYB83
---
accatgacactgcatcaatcgcgtctctcacatcaatgcttcaacaattttcaaaaagag
gtaaagaatcgaccaacccgcataattgtttttttttttc
25569800
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<--------
<---------
AHL20(2)
<---------
ZAT18
<--------
--------->
AHL20(2)
--------->
TOE2(3)
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
------->
ID1
--------->
ICU4
----------->
GT1
<---------
ICU4
----------->
GT1
----
gtcgtttatactagcattgattatttattttttcattcacatatcaaattgttaaaaaaattcttaatttttgcacttgttctgttaaaattttataatt
25569900
<----
--------->
ANAC58
--------->
ANAC58
--------->
AHL20(2)
--------->
ANAC46
<---------
AHL20(2)
<------
ZmHOX2a(2)
<---------
WOX13(1)
<---------
ARR11(3)
--------->
ATHB12
<-----------
GT1
------
--------->
ICU4
--------->
YAB1
------
<---------
YAB1
--------->
WOX13(1)
<-----
--------->
YAB1
<---------
AHL20(2)
<-----
--------->
ICU4
--------->
AHL20(2)
-------
-
AHL20(2)
--------->
YAB1
<------
ZmHOX2a(2)
--------->
ARR11(3)
-
YAB1
--------->
AHL20(1)
<---------
MYB46(3)
--------->
ARR11(3)
--------->
ARR14(2)
------->
GT1
<---------
YAB1
<-----------
RAV1(1)
<---------
ARR11(3)
<---------
ARR14(2)
tgttaaaacatattatgatgattaattctaaatctcttgatactgtggtttatgcattgtattgatacgatctaagaattaatcacgatctacgaaatta
25570000
<------
<--------
ATHB1
--------->
TOE2(3)
--------->
ATHB12
--------->
GLK1(1)
------>
ZmHOX2a(2)
<---------
GLK1(1)
<------
ZmHOX2a(2)
-----
AHL20(2)
<---------
At5g28300
--------->
CCA1(2)
<---------
ARR11(3)
--->
AHL20(2)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AGP1
-----
--->
AHL20(1)
<---------
AHL20(2)
--------->
ARR11(1)
--------->
ARR11(3)
<
----
AHL20(1)
--------->
CCA1(2)
---------->
DOF2
<---------
CCA1(2)
----
----
AHL20(2)
<---------
ARR11(3)
<---------
ANAC55(2)
<------
MYB46(1)
--------->
ICU4
-->
AHL20(2)
--------->
ARR11(3)
<-----------
HVH21
<------
MYB83
<---------
ATHB12
atttgaagaaatctcaaataagatataaatgtataaatcacagtgtttgtcacataaaaaagatttgaagctatttggtcttagatctcaatgatttaac
25570100
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AGI:
At1g68210.1
Description:
APRR6 (PSEUDO-RESPONSE REGULATOR 6); transcription regulator. Identical to Putative two-component response regulator-like APRR6 (APRR6) [Arabidopsis Thaliana] (GB:Q9C9F6); similar to ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT2G01760.1); similar to TPA: response regulator [Oryza sativa (japonica cultivar-group)] (GB:FAA00259.1); contains InterPro domain Response regulator receiver; (InterPro:IPR001789); contains InterPro domain CheY-like (InterPro:IPR011006)
Range:
from: 25569646
to: 25572965
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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