Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->ATHB12                                                 <--------ATHB1                          <---------AHL20(2)     --------->ATHB51                          --------->AHL20(2)     <---------ICU4                         --------->AHL20(1)      -------->HAHB4                         <---------AHL20(1)     --------->AHL20(2)                         --------->AHL20(2)     <---------AHL20(2)                  --------->LBD16               <---------YAB1                  ----------->GT1<---------AHL20(2)  ----------->GT1                --------->At4g35610             <---------ATHB51                <---------LBD16 <---------YAB1  --------->ICU4  --------->CCA1(2)        <---------RAP2.6(2)   <---------ICU4  --------->YAB1 <---------TOE2(3)       <---------LBD16   <---------AHL20(2) <---------AHL20(2) <---------ARR11(3) ---------YAB1  <---------At4g35610         --------->AHL20(2) --------->ARR11(3)            <-------TEIL   ttttgattttgcggttttagcggaaaatttaatttttattttttaaaaaaataattggaaaataagatttaagtctatttgtttttatctaaaaatacat  25404900                       <---------ARR11(3)                       --------->ARR11(3)                      <------ZmHOX2a(1)                   --------->YAB1                <---------ICU4                                                           xxxxxxxxxxxx               --------->ICU4                                                            xxxxxxxxxxxx               <---------ATHB51                                                          xxxxxxxxxxxx               <---------AHL20(2)                                              --------->AHL20(2)               --------->AHL20(2)                                             <---------AHL20(2)              <---------AHL20(1)                                              --------->AHL20(2)             --------->YAB1                                          <---------ATHB12 xxxxxxxxxxxxxxx           <---------AHL20(2)                                  --------->AtLEC2<---------AHL20(2)           --------->AHL20(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)          --------->YAB1<---------CCA1(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <x          --------->AHL20(2)                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxx       --------->WOX13(1)                     <---------YAB1  <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxx      --------->AHL20(2)<---------RVE1(1)   <---------ICU4  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxx   --------->YAB1 --------->ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2)<---------TOE2(3)----------->GT1  --------->MYB46(3) ------>ZmHOX2a(2)  xxxxxxxxx   ctaaataatcaattaaaataattaggatatttttgtcatttgttaattctgactgaaccatctccatccaaatgatccaattaaattcagccaaatgagt  25405000                                                                                                    x                                                                                          <xxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              --------->MYB52(1)    <                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           --------->ANAC46   <xxxxxx           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          --------->TOE2(3)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <---------MYB52(1) <xxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 ------->TEIL<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xx xxxxxxxxxxx>smallRNA(le3)                     xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxx>smallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxx xxxxxxxxxx>smallRNA(le3)                   <---------AtLEC2 <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(i)           --------->ATHB12 <xxxxxxxxxxxxxxxxsmallRNA(s)------->TEIL ----- xxxxxxxxxxx>smallRNA(si3)           <-------TEIL    --------->At4g35610--------->ZAT18 <xxxxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(si3)    --------->ATHB12   <---------At4g35610<---------ZAT18<xxxxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(si3)     -------->HAHB4    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(si3)    <---------ATHB12 <------ZmHOX2a(2) --------->MYB52(2)<xxxxxxxxxxxxxx   ttcaaaatttagcctaaattttcaaactcatccaaatgattcatttggatggatcatctgaatgaaccgttttttgcactaaacgaacatcaaaactcat  25405100            ------>ZmHOX2a(2)      <---------At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              --------->ATHB51    <---------HSFB2a(2)                                                 --------->YAB1    --------->HSFB2a(2)                                                 <--------ATHB1  <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->AtLEC2                                             --------->TCP15(1) xxxxxxxxxxxxxxx>smallRNA(i)                    --------->GLK1(2)       <---------ICU4 xxxxxxxxxxxxxsmallRNA(se3)    --------->MYB52(1)     ---------->DOF2   <--------HAHB4 xxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------ARR14(2) xxsmallRNA(fl3)             <---------MYB52(2) --------->ARR14(2)     --------->ICU4 >smallRNA(fl3)              <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <---------ARR14(2)     <---------ATHB51 xxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxsmallRNA(s)       <---------PCF2 xxxxxxxxsmallRNA(i2) --------->YAB1           <---------GLK1(2)   ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->TOE2(3)      <------MYB83 <---------AHL20(2) xxxx>smallRNA(i2)  <---------WOX13(1) --------->TOE1(3)      <------MYB46(1) xsmallRNA(i)  <---------At4g35610     <xxxxxxxxxxxxxxxxsmallRNA(i)------------>CBF ---->At4g35610--------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2) xxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------MYB46(3) xxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ALFIN1 xxxxxxxxsmallRNA(i2)--------->ICU4 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ATHB12 xxxxxxxxxxxxx xxxxxxxxxsmallRNA(si3) <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)     ---   ctccatccagatgatccatctgaatgatgaaacgaacagagccttaatagaatctgaaaagagtgggtcctcaataattaaaaaccaagaattcaagggg  25405200                  --------->ANAC58                                                                  -             ---------->DOF2                          ------>MYB83                                  <          ------>ZmHOX2a(1)                           ------>MYB46(1)                               <    <----------DOF2   ---------->DOF2               --------->MYB46(3)                              -    <---------DAG2<----------ID1 <-----------GT1    <---------MYB46(2)                       <------- xxxxxxxxx>smallRNA(si3)    <----------DOF2        *TSS                                      -------- ------>ALFIN1    --------->ANAC58            --------->YAB1            <---------CCA1(2)--------->YAB1   atgggacttttcctataaagaagccaaagcctttctcaccattttctctcatcaccaaacaaacaaacacattcaaatctcataaacacattgataagta  25405300    ------>ZmHOX2a(1)                                                               ------>NtERF2 -------->ARR14(2)                                                                 --------->DEAR3(1) ---------ARR14(2)                                                           ------>ZmHOX2a(1) ---------ARR11(3)                                                           <----------DOF2       <- -------->ARR11(3)   --------->YAB1        ---------->ID1                    ======================== --ANAC55(2)      --------->YAB1           <---------CCA1(2)              ---------->ID1         ---- --->GT1    --------->CCA1(2)       <---------ZAT18                 ------>ZmHOX2a(1)     --------->ATHB12   aaaatcctctcgagagacaagaatgagaatgacacttgttcacttgtctctctccctcttctcatgtctcctccttgtcctttctccgaccttcattgcc  25405400                                                       <---------ATHB12                                                     --------->WOX13(1)                                               <---------ANAC58                                               <---------ANAC58                                               ----------->GT1                                               <---------ANAC55(2)                                               --------->ANAC55(2)      <-----------HVH21                       --------->ZAT18     --------->O2                             <---------------------WRI1     --------->TGA1a                   --------->MYB52(1) --------ALFIN1                        <---------DOF5.7(2)                            ----------->GT1 ==============bZIP_DOF              --------->DOF5.7(2)         ---------->DOF2      <---------ZAT6 -->NtERF2    ------->TEIL     <---------HSFB2a(2)  --------->MYB46(3)          <-----------GT1   tccactcccgtctccgaacccgaactcgtagttcaagaagttaacgagtgcgtaacaatcaatgtttaaaagtagtagttttatactattgttaaacatc  25405500                                                                                --------->TCP16(1)                                                                                --------->TCP20                                                                                --------->TCP15(1)                                                                                <---------PCF2                                                                                <---------PCF5                                                                               ----------->HVH21                                                                             --------->ALFIN1                                                                           <---------O2                                                                    <---------ZAT18                                                                    --------->ZAT18                                                          --------->GLK1(2)<-----------RAV1(1)                                <---------HSFB2a(2)     <------ZmHOX2a(1)  --------->O2<---------GLK1(1)                          <---------AHL20(2)      <---------HSFB2a(2)      --------->TGA1a                         <---------AHL20(1)       --------->HSFB2a(2)      ==========================                         --------->AHL20(1)   <---------ANAC58   <---------ANAC46      --------->GLK1(1)                  <---------ANAC46            <---------ANAC58   <---------ANAC58     --------->ARR14(2)     <-----------GT1    <---------AHL20(2)    <---------ANAC46   <---------ANAC58   --------->LBD16  --------->YAB1<---------ANAC46--------->HSFB2a(2)  <------ZmHOX2a(1)     <---------TGA1a   ggcattataacattgttgttgtgtatatatatttgtagaaagattaatgcgtctaggaggaatctaggcgtgctctcatgtgggaccggaaatccaattg  25405600                                                                                           ----------                                                                                           ----------                                                                                         <---------ANAC58                                                                            --------->ANAC58                                                        --------->LBD16     --------->ANAC46  <------                  --------->ANAC58                     <---------ANAC46     --------->ANAC58 --------                  --------->ANAC58                     <---------ANAC58     <---------ANAC55(2)             ----------->HVH21                 <---------At4g35610          --------->ANAC55(2) -----         <---------GLK1(1)                  <---------MYB52(1)   --------->ALFIN1        <---------ANAC58         <---------At4g35610               <-----------HVH21 ------>ZmHOX2a(2)        <---------MYB46(3)   <-------GAMYB<-----------------AGL1    <---------MYB46(3)<------ZmHOX2a(2)        --------->ALFIN1  <-----------RAV1(1)                  --------->MYB52(1)  --------->ARR14(2)        <---------AtMYB61  <---------MYB46(3)                   ------------>AtMYB77<---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ==========MYC_MYB--------->ANAC46--------->DEAR3(2)   <---------ANAC58     --------->ANAC55(1)------   acgactgttggagatgcgacccgaaatgggagaaaaaccgacaacggttagccgattgcgcgatcgggtttggcaaacacgcaatcggtggtcgtgacgg  25405700                                           --------->TOE1(3)                                    <---------MYB46(3)                                   --------->ALFIN1   <---------ARR14(2)                                 --------->O2         --------->ARR14(2)      <---------ANAC46           <---------ANAC58  --------->ANAC58   --------->TOE2(2)             <---------bZIP60(2)--------->LBD16 --------->ARR11(3)              <---------ANAC58  --------->ANAC55(1)     ------>ZmHOX2a(2) <-----------ARR10               ========================bZIP_DOF     --------->At5g28300 <---------ARR11(3)              <---------ANAC46  --------->ANAC58 <---------DEAR3(1) ->HVH21                         <---------TGA1a  <---------LBD16  <-------MYC3 ->TGA1 --------->ALFIN1         <---------O2 ---------->DOF2     --------->ANAC58 ---ANAC46                  ---------->DOF2--------->TOE2(3)      <---------O2                 <----- ->RAP2.6(3)                ===============bZIP_DOF--------->ANAC46------->MYC3    --------->ANAC58 ---->At5g28300         ----------->HVH21 --------->ZAT6          --------->ANAC58 --------->ANAC46 ----->GT1    <---------WOX13(1)<-----------------------TaNAC69(2)--------->ANAC46 --------->ANAC58   taaaatctacgtggtgactgactcgagtgacaaagacgtggttaaccctaaacccggaacccttagacacgcggtgatccaagacgagccactatggatc  25405800  Previous    Next  AGI:  At1g67750.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 5 precursor [Arabidopsis Thaliana] (GB:Q9FXD8;GB:Q8L8V9;GB:Q8W116); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42465.1); similar to pectate lyase [Salix gilgiana] (GB:BAB59066.1); similar to unknown [Populus trichocarpa] (GB:ABK94358.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Pectin l Range:  from: 25405251    to: 25407166    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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