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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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------->YAB1
--------ICU4                                                                                       <
-------ATHB12         --------->TOE2(3)             <----------DOF2        ----------->GT1      <---
------>ICU4      --------->AHL20(2)            ---------->DOF2 <---------YAB1                  -----
---->YAB1        <---------AHL20(2)     ----------->GT1      <-----------GT1              ----------
 
atcatgaaattggtcactatttaaacatcaatacaatctcaagaggtaacaaaagctttgaattttactattgggcaatggaaaataagaaaaatgtgat  25351700
<---------At5g28300
-----------GT1  --------->DAG2                        ----------->GT1        ----------->RAV1(2)
------ICU4     ---------->DOF2        <------ZmHOX2a(2)               ----------->GT1
---->ICU4  <---------YAB1            <---------ARR11(3)     <---------AHL20(2)            ----------
->GT1    <---------At4g35610         --------->ARR11(3)--------->At5g28300 <---------ALFIN1   <-----
 
ttttaccgattgagatgataaagttcccaacttgaaacaagatcagaaggcttaagactgtaatttatgcagagagtaacacctgtaagaaaaaaacagt  25351800
                    --------->CCA1(2)
                    <------ZmHOX2a(2)
                   <---------ARR14(3)
                   --------->ARR14(3)
                   <-----------ARR10
                   --------->ARR14(2)
                   --------->AGP1
                   <---------AGP1 --------->CCA1(2)
                   <---------ARR11(3)
                   --------->ARR11(3)
                   <---------ARR14(2)
          ----------->GT1        --------->ARR11(3)                                      --------->HSFB2a(2)
        ---------->DOF2     <------NtERF2                                  --------->GLK1(2)
--------->CCA1(2) --------->RVE1(1)                                        <-----------ARR10      --
-------------->ANAC81------>ZmHOX2a(2)          <---------ARR14(2)        <---------GLK1(2)    -----
------HVH21    ---------->DOF2   <---------ARR11(3)            --------->REM1(1)         <---------HSFB2a(2)
 
cagatataaacaaaagttaaaagatctgggcagagagatattagattaggggatagtgtctcgcttacatctcttaagaatctcgtcttcttccacaaga  25351900
                                   ----------->RAV1(2)
                                   --------->At4g35610
      <----------DOF2              <---------At4g35610                                            <-
   --------->RAP2.6(2) <----------DOF2                                                            <-
-------->DOF2 <-----------GT1   ------>ZmHOX2a(1)                                              -----
---->YAB1<----------DOF2    <-----------GT1               --------->ZAT14            ------>ZmHOX2a(1)
 
ataaagccgcttcttttaaactcgttctttatttcctcatctgtagccattttctttcaacttcactctctcgctctctctgtgtttcctagagagagaa  25352000
                                       <------NtERF2
                                       <<<<<<<<<<E2Fb
           ----------->HVH21          --------->LBD16
           <---------RAP2.6(2)       <---------ANAC46
       <---------ANAC46              <---------ANAC58
     <-----------RAV1(1)             <---------ANAC58
  <-----------RAV1(1)               <---------LBD16             <---------MYB46(3)
---------DOF2                     --------->ALFIN1           <------NtERF2     <----------DOF2
--------DAG2                --------->ANAC58               <---------ANAC46    <---------DAG2      <
---->GLK1(2)------>NtERF2   --------->ANAC58        <----------DOF2 *TSS   <---------ZAT18        --
 
gctttttgttgtgggcgactggtgaagacgaaggcaagtggcgggaaattgtctggtttagggcgggatgttggctaatgcccttttctctaaccttctt  25352100
                                                                     --------->DOF5.7(2)
                                                                    --------->TOE1(3)
                                                                    --------->TOE2(3)
                                                                   ----------->GT1
               <---------AHL20(2)                                 <---------TOE2(3)----------->GT1
         --------->LBD16                                     --------->TOE2(3)    --------->DAG2
     ------->TEIL                                            --------->TOE1(3)----------->HVH21
---------AHL20(2)                                           ----------->GT1--------->ATHB12
------->AHL20(2)                                            <---------ANAC55(2) ---------->DOF2  ---
 
atttaatggacccgagttttaaatgggccttaaattttgaacaaaaacaaatgggccttgaatacgttaaacgttaaatgagtgaaaggtgaaaacagtt  25352200
                                           --------->ANAC58
                                           --------->ANAC46
                                           <---------ANAC55(2)
                                           --------->ANAC58
                                <---------DAG2
                            --------->WRKY12
                            --------->WRKY45----------->GT1
                            --------->WRKY38(1)
                           <---------MYB52(1)
                           --------->DOF5.7(2)
                          <-------GAMYB    --------->ANAC55(1)                           <----------
                          <---------At4g35610--------->At5g28300             --------->ARR11(3)
               --------->WRKY12 <----------DOF2                              <---------AHL20(1)
  <---------GLK1(2)      <---------ANAC46 <---------LBD16                    --------->AHL20(1)
------->GAMYB  --------->WRKY38(1)       <---------ALFIN1                   <---------AHL20(2)
-------->RAV1(1)<---------WRKY18(1) <-----------GT1                     --------->AHL20(2)
 
caacagaaactgaaacggttgactaattccgttgactttttgcaacacggaaaatagttcatgtagggaatttgaataaatattttggtcagactgaatt  25352300
                                                                     <---------ZAT2
                                                                     --------->ZAT2         <-------
                                                                     --------->At4g35610    --------
                                          --------->AHL20(2)         <---------At4g35610--------->AHL20(2)
                                          <---------AHL20(2)        ----------->ARR10   <---------AHL20(2)
                                          --------->AHL20(1)     <---------ANAC58      <---------YAB1
                                          <---------AHL20(1)     <---------ANAC58   <---------YAB1
                                       --------->YAB1     <---------MYB59          --------->TOE2(3)
                                      <---------AHL20(2)  <---------DAG2         ------>MYB83
                               ------->MYC3               --------->TOE2(3)      ------>MYB46(1)
   <---------GLK1(2)           <-------MYC3               --------->TOE1(3)     ----------->RAV1(1)
-------AGL2          <---------YAB1------->TEIL        <-----------GT1        --------->MYB46(3)
 
tggctagattatcaaatttggagtatgaaaaacacatgtatataataaaataggctatttaccttattgcttagctccgaaaccaacattataaattatc  25352400
                                                                                      ---------->ID1
                                                                        <---------ARR11(3)
                                                                        <---------GLK1(2)
                         <------MYB83                                   --------->ARR14(2)
                         <------MYB46(1)                --------->ARR11(3)       <---------GLK1(2)
                     --------->GLK1(2)                  <---------ARR11(3)    --------->HSFB2a(2)
                ---------->DOF2                         --------->GLK1(2)     <---------HSFB2a(2)
--ICU4         --------->AHL20(2)         --------->ANAC58              <---------ARR14(2)
->YAB1         <---------AHL20(2)         --------->ANAC58              --------->ARR11(3)       <--
 
acacaaatttgtagggaattaaagaatttggtttttggattttgtaagcaaattgccaaaatctatctaaatccagattttctagatttgtttttttttt  25352500
                    --------->GLK1(2)
                    --------->ARR11(3)
                    <-----------ARR10                                                        <------
                    <---------ARR11(3)                          ----------->GT1      --------->ARR11(3)
           <---------YAB1                                      --------->MYB59       --------->AHL20(1)
          <---------AHL20(2)                               <---------GLK1(2)         <---------ARR11(3)
        <---------YAB1            <---------YAB1    <---------AHL20(1)               <---------AHL20(1)
        <---------------AGL15   --------->YAB1      --------->AHL20(2)             <---------AHL20(2)
     <---------AHL20(2)         <-----------GT1     --------->AHL20(1)             <---------AHL20(1)
     <---------YAB1 --------->ARR14(2)              <---------AHL20(2) --------->AHL20(2)   --------
    <---------AHL20(2)    <----------DOF2          <---------ATHB12   --------->AHL20(2)  <---------
---------GT1        <---------ARR14(2)  <---------YAB1     --------->ARR11(3)      --------->AHL20(1)
 
aaactatttttattattttagaaaatctacttttattacaattgtgaatgggcaataaattagattttggtaaataaaaaaactaaaatatttttaccta  25352600
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AGI:  At1g67630.1   
Description:  POLA2; alpha DNA polymerase. similar to unnamed protein product [Vitis vinifera] (GB:CAO46654.1); contains InterPro domain DNA polymerase alpha/epsilon, subunit B; (InterPro:IPR007185); contains InterPro domain DNA polymerase alpha, subunit B (InterPro:IPR016722)
Range:  from: 25348103    to: 25352069    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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