Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <------ZmHOX2a(2)                          ---                                                      --------->ARR11(3)                          <--                                                      <---------ARR11(3)                      <------                                               --------->At4g35610                           <-------    <---------ARR11(3)                        <---------ARR11(3)                 ---------->DOF2 ----    --------->ARR11(3)    ---------->DOF2     --------->ARR11(3)  --------->ANAC46         --------->AHL20(2)   aactaaaatctaagacaaaacaataactcaaaggcacaagagtaagaagagcttacgatctacaataaacgagacgaagaacaaaatgcgagattatatc  25212200      <---------ICU4   --------->YAB1 --->ZmHOX2a(1)                                                                                    -- -------YAB1      --------->TOE1(2)                                     --------->GLK1(2)         --- -----GT1   <---------HSFB2a(2)               ---------->DOF2      ---------->DOF2          --------- --CCA1(2)  --------->HSFB2a(2)  <---------TOE1(2)              --------->YAB1              <-------- ----->TOE2(3)   <---------HSFB2a(1)   <----------DOF2       --------->YAB1                 ---------   cttattgatcatttctgaaacattcgaaagtctcatatgttctttccacaaagtctctacctataatcaaaaagaatttgaatttgaataacaaaatctg  25212300                                                                    <-------MYC2                                                                    <-------MYC3                                                                    ------->MYC3                                                                    ------->PIF5                                                                <---------ZAT18                                                                --------->ZAT18                                                       <---------TOE2(3)        --------------->AGL15                          <---------TOE1(3)   <-----------HVH21                                <---------MYB52(1) ------->DAG2                           <------ZmHOX2a(2)    <---------ANAC46  ----------->RAV1(2) ------->DOF2                          <---------ARR11(3)    <---------ANAC58  --------->At4g35610 >ARR14(2)                             --------->ARR11(3)    <---------ANAC58  <---------At4g35610 -ARR11(3)                    ------->TEIL        <---------ANAC58  <-------PIF5 >GLK1(2)              <---------AHL20(2)         <---------ANAC58  ------->MYC2          <----------DOF2   aaaagtgtcactaaaaatatcaaatttttatgaacatacaagatcatccatttcgttagggtttcgtgcacgagctaatccatctgagactcctttaaga  25212400                                                 --------->ANAC58                                                 --------->ANAC46                                              <---------REM1(2)                          --------->TOE1(1)              <---------AHL20(2)          --------->GLK1(2)                     <---------WOX13(1)              --------->AHL20(2)         <---------GLK1(2)                    --------->ATHB12             --------->AHL20(2)      ---------->DOF2     --------->At4g35610 <---------YAB1     ---------->DOF2               --------->LBD16 ---------->DOF2           <---------AHL20(2)   <--  --------->YAB1                 <---------LBD16 --------->ANAC58   <<<<<<<<<<MYB80      --------->TOE2(1)   actatcacaaagaaatttaaaaaacttttcaaaaccccagaaagattctacacgaaagcagcgaaattttggtttgaatttgattgaaacctcgtaagcg  25212500                                          --------->ALFIN1                         --------->bZIP60(1)                                        --------->ALFIN1                 <-------GAMYB                                       <-------MYC3               --------->ALFIN1 <---------O2                                       ------->MYC3               <---------ANAC58 --------->O2                             --------->ZAT18                  <------ZmHOX2a(1)--------->DEAR3(2)           --------->At4g35610  --------->GLK1(1)       <-------TEIL--------->ALFIN1   <-------GAMYB     <---------ANAC46        <---------ZAT18           --------->CCA1(2) <---------At4g35610    <---------------------WRI1------>NtERF2           --------->ARR11(3) --------->At4g35610       <-  <---------DEAR3(1)       <---------At4g35610--------->At4g35610 <---------ANAC46 <---------bZIP60(1) ----ZmHOX2a(2)            --------->At4g35610<---------At4g35610 <---------ANAC58<XXXXXXXXXXXXXXXXXX   atcgatggcgaagagctcaaactcttctaagcggacttccatgtgtggagctgtaagatacagaggaagcgtgggagttgaaacgacgtcgttggagact  25212600                                                                                                    <                                                                                               ------                          <---------ICU4                       <---------ANAC58           --------->HSFB2a(2)              <---------CCA1(2)                   <---------At5g28300                     <---------HSFB2a(2)            <---------ANAC58       *TSS          <-----------GT1       ---------->DOF2--------->MYB52(2) --------ZAT18<---------ARR14(1)  <---------GLK1(2)   <---------MYB52(1)      ---------->DOF2 ------- XXMIR4228  <---------ANAC58 <-----------GT1 <<<<<<<<<TBF1     <---------ANAC58      <-------TEIL  <-   gttcgcttctgagagcgtatcacttccatttttactgattctacttcttcttcaccgttctctattcgtgagccaaagaagaaagggttcgtcgagaaaa  25212700                                                                                    <---------YAB1                                                                                  -------->ATHB1                                                                                  <--------HAHB4                                                                        <---------YAB1                                                                      ---------->DOF2         -------                                                                  --------->ICU4  <---------ICU4                                                                --------->YAB1    --------->ATHB12                                                                <---------ICU4    --------->ATHB51    ---------->DOF2                <-----------RAV1(1)         --------->ICU4     --------->YAB1 --------->LBD16       <---------ANAC46       <---------YAB1 --------->YAB1      --------->ICU4 ---------LBD16     <------ZmHOX2a(1)<---------MYB52(1)     <---------YAB1     --------->WOX13(1) --->DAG2        <-----------RAV1(2)<-------GAMYB    --------->PCF2--------->YAB1<---------ATHB12 --->DOF2 <-------TEIL--------->At4g35610  <-----------------AGL3 <---------YAB1 <---------ATHB51 --------LBD16   ==============================RAV   <---------PCF2-------->HAHB4<---------YAB1   gcgcgggaaagatgcaggctcaggagcgggaatttctctgttgggcctattaatgggcccatatgataatgataaagatagcaattattagagaatagat  25212800                 --------->ANAC46                 --------->ANAC58           <-------GAMYB           <---------ANAC58           <---------ANAC58          <------MYB83          <---------ANAC58          <------MYB46(1)         <------MYB46(1)         <---------MYB46(3)         <------MYB83       <--------P--------->ANAC58      ----------->GT1                      ----------->GT1     --------->ATHB12                 <---------TOE2(3)                <------MYB83     <-------GAMYB    <---------TOE2(3)                 <---------YAB1    <----------DOF2<------MYB46(1) --------->MYB52(2)    <---------YAB1       ---------->DOF2         ---------->DOF2       <---------MYB46(3)<---------MYB52(1) -->ATHB12<---------ANAC58  --------->ATHB12  <-----------HVH21    <-----------RAV1(1) <---------MYB46(3)   tggaatatggttgggttgcacacaaaaaaaagattggaatatggttaatgtcaaagcactttgatgaaattgttggttttgtaaatcggtcgttactact  25212900                                                                                        <-----------RAV1(1)                                                                                      --------->YAB1                                                                                     <---------ATHB51                                                                                     <---------ATHB12                                                                                     --------->ICU4                                                                                   --------->WOX13(1)                                       --------->ZAT6                       <---------ICU4                                  --------->YAB1                           --------->ICU4                                  --------->TOE1(3)                        <---------ATHB51                           --------->ZAT6    --------->YAB1                --------->AHL20(2)                   --------->LBD16--------->TOE2(3)      --------->ARR11(3)<---------AHL20(2)--------   caggtctatataagtctaatcccgatgtaacagtaatcttaacacaataacaaatagaagaaattgtttagttgaaaataattagcaattatgttgtgac  25213000                                                                                            ---------                                                                                        -------->P                                                                                       ------->GAMYB                                                                                      <---------MYB55(2)                                                                                      <---------MYB111(1)                                                                                      --------->MYB46(3)                                                                                     ------>MYB83 ---                           <---------ANAC55(2)                                       ------>MYB46(1)     ----------->GT1  <---------ICU4                     <---------GLK1(2)        --------->MYB46(3) --->HVH21          --------->TOE2(3)                  ------->GAMYB<---------AHL20(2)<---------MYB111(2)   cgagaaatagagaaatgtttttcattaatacataaactgttttgatgaaattttcaacagaatcacctagtttattagtctaaaaccaacaaccagttgc  25213100  Previous    Next  AGI:  At1g67320.1    Description:  DNA primase, large subunit family. Identical to Probable DNA primase large subunit [Arabidopsis Thaliana] (GB:Q84WJ2;GB:Q0WRZ1;GB:Q8LFN6;GB:Q9FYG1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71590.1); similar to Os07g0406800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059432.1); contains InterPro domain DNA primase, large subunit, eukaryotic/archaeal; (InterPro:IPR007238); contains InterPro domain DNA primase, large subunit, eukaryotic (InterPro:IPR016558) Range:  from: 25209055    to: 25212635    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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