Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <-------GAMYB   =====================HOX2a_HOX2a                                        <---------MYB46(3)   <----------TaMYB80                                     --------->MYB52(1)  ------>ZmHOX2a(2)                   ---------->DOF2  ----------->HVH21   <------ZmHOX2a(2)          --------->WRKY18(1)       ============================HOX2a_HOX2a         <-----------HVH21          ----------->TGA1    ======================HOX2a_HOX2a        ----------->GT1         --------->GLK1(2)      --------->ARR11(3)    <---------ARR14(2)         <---------GLK1(2)--------->ALFIN1              <------MYB83       ----    --------->ARR14(2)        --------->HSFB2a(1)----------->GT1       ------>ZmHOX2a(1)     <-------   --------->WOX13(1)        <---------ATHB12<---------AtMYB61--------->ARR14(2)             -------- ----------------->AGL1    ---------->DOF2   <---------TOE2(3)<---------ARR14(2)    --------->ANAC55(2) ------ANAC58   --------->TOE2(3)   ===========================HOX2a_HOX2a    <------MYB46(1)-------- ------ANAC58   --------->TOE1(3)   ------>ZmHOX2a(1)  <---------ARR11(3)    <---------TOE1(2) <-----   cttgccaatcgggtcaaaccctaaatcgccaaagattcctgacggttgaggtggtaagatcgcatatactgtcctgtgctaggtttacatatcacacaca  25103900                                       --------->AHL20(1)                                       --------->ARR11(3)                                       <---------ARR11(3)                                       <---------AHL20(1)                                      --------->AHL20(2)               --------->ICU4                                --------->ANAC58                    ----------->HVH21       <---------At5g28300      ----------->GT1                     <---------MYB52(1)      <-----------GT1           --------->ANAC55(2)                --------->LBD16   <---------ICU4               --------->ANAC58                  <---------ANAC55(2) ----->ANAC46              <---------------AtSPL3                 --------->ANAC55(2) --ALFIN1                  --------->ANAC46                       --------->O2 ->ANAC58                <---------ALFIN1         ---------->DOF2 <---------O2                     <- ->ANAC58                --------->ANAC46     >>>>>>>>>>MYB80     <---------ANAC46  <---------AHL20(2) ----ALFIN1  <----------DOF2    <---------ANAC55(2)       --------->STY1(2) <---------TOE2(3)--------   cttcatagttaccctcttttgacatccacacagtacgtaaatatatcaaaccaaaagcatagctagtcccgtgatgttgatgttgttttatttcagaaag  25104000                                                                                               ======                                                                                               <-----                                                                                              <------                                                                                            <--------                                                                                            ---------                                                                                           <---------TOE1(2)                                                                                       --------->HSFB2a(2)                                                                                    ------>NtERF2                                                                                    --------->ABI4(1)                                                                                   --------->DEAR3(1)                                                                        --------->At4g35610--------->SPL7                                                               <---------ANAC46    --------->ANAC46                                                             ------>NtERF2         <---------ALFIN1                                                            --------->DEAR3(1)    --------->DEAR4(2)                                                            ----------->HVH21    <---------At5g28300                            --------->CCA1(2)               <---------DEAR3(1) --------->MYB46(3)  --                            --------->At4g35610             <----------ID1     <---------MYB55(2) --- ------TEIL  --------->At4g35610                           --------->ATERF1(1)--------->ANAC46------- -->DOF2     <---------At4g35610             <---------GLK1(2)<------NtERF2 <---------ALFIN1---------   cttcatatgaaaatcagcggctacttcaagagatgacttctcatatggattcttaggctgaggcgacgagtagaagctccactcaccgcctcgaacgatc  25104100         <---------ANAC58         --------->O2         <---------TGA1a         ==================================MYC_MYB         <---------O2         <---------bZIP60(2)         --------->TGA1a         ========================================MYC_MYB         <---------ANAC46               -------->P         <---------ANAC58             --------->MYB46(3)        <-----------------------TaNAC69(2) ==============================HOX2a_HOX2a -ZmHOX2a(2)                       ------->GAMYB  <---------ARR11(3) ---ARR14(2)                      --------->MYB46(3) -HSFB2a(1)                       <---------MYB52(2)   <---------WRKY18(1) >HSFB2a(1)                      <---------TOE2(3)--------->ARR11(3)                       ---------- ------->LBD16                  <---------DOF5.7(2) <---------ICU4         --------->AtMYB61--------- ------>LBD16            --------->ARR14(2)      --------->GLK1(1) <XXXXXXXXXXXXXXXXXXXXMIR783   ---- -->ARR14(2)             <---------ARR14(2) ----------->GT1    --------->ANAC58         --------->ANAC58 >HSFC1(2)              <------ZmHOX2a(1)----------->RAV1(2)   --------->ANAC58         --------->ANAC58   ccgagtaagagacgtggattagatgaggacctgttaacgaacaacctggtgaaatcttgactggcaagcatggacgaccatagcttcgaaacgcagtgaa  25104200                                                                                         <-------GAMYB                                                                                        <---------MYB46(3)                                                                                        ------>ZmHOX2a(2)                                                                                  --------->YAB1                                                   <---------MYB52(1)       ------>ZmHOX2a(1)                                               ====================================HOX2a_HOX2a                                               <------ZmHOX2a(2)            ===================HOX2a_HOX2a ->GT1   ------->TEIL                        --------->At4g35610  <---------TOE2(3)    <---------YAB1 >At5g28300<----------DOF2               --------->GLK1(2)        <---------TOE1(2)   <---------ARR11(3) ----->ARR11(3)                         --------->YAB1            <---------TOE1(3) <---------YAB1   atctcgcgatggactttgtaggcagtctcgagagtatatcaagaatcagatcagttgggatggaatctaaggtttctcctctattcatgatcgttgtatt  25104300             ---------->DOF2        --------->LBD16       <---------ANAC58       --------->HSFB2a(2)              ----------->GT1                       --------->WOX13(1)   --       <---------ANAC46              --------->GLK1(2)                    ----------->GT1          <-       <---------HSFB2a(2)           <---------ARR14(2)           ----------->GT1                 <--       <---------ANAC58              --------->ARR14(2) ------>MYB83<<<<<<<<<MYB98--------->WOX13(1)      <---------LBD16       <---------YAB1              ------>MYB46(1) <------------CBF         ----   <---------ANAC58       --------->CCA1(2)           <---------MYB59 <---------AHL20(2)         <---   <---------ANAC58      --------->ARR11(3)        <-----------GT1<---------YAB1<---------ATHB12<----   <---------ANAC46      <---------ARR11(3) --------->AHL20(2)<---------GLK1(2) ------------>CBF-----   agtttgcttgcggaagaaagagagagagatatgaatacaaatctgttaaaatttgacctaattagattatgttaaattgttaatcaatctcatttatggt  25104400                                                          <------NtERF2                                                          <---------At4g35610                                               ------>ZmHOX2a(1)  --------->ICU4                                               <----------DOF2  <----------DOF2                                               --------------->AGL15                                               <---------------AGL15                                              <-----------------AGL1   ----------->HVH21                          <-----------------AGL3 ------->ZAT18                                <-----------------AGL2   <-----------GT1 -----NtERF2                <---------ZAT6  ------>MYB83  --------->ZAT2 -------DEAR3(2)        --------->ICU4      ------>MYB46(1)  ------>NtERF2                   <------- ----->ETT(1)           <---------YAB1    ------->GAMYB   --------->ATERF1(1)          --------->YAB1 ------DEAR3(1)    --------->ANAC58      --------->MYB46(3)--------->ATERF1(1)        <---------At4g35610 -----ORA47(1)     --------->ANAC58    <-----------GT1    <---------ZAT2              --------->At4g35610 ---->RAP2.6(3)  ---------->DOF2 <---------TOE2(3)        --------->At4g35610  <-----------GT1   <---   cggcactgaccaaggcccaagaagccatgagtgttaagttttaaccatcctttttttggcagcgggccttaattaaccatttaacttcatcagaactttt  25104500                                <---------ARR11(3)                         --------->ARR14(1)                         --------->CCA1(2)                         --------->GLK1(2)                        <---------GLK1(2)                        --------->ARR14(2)                        <---------ARR14(2)                        --------->ARR11(1)                       --------->GLK1(1)                       <---------GLK1(1)                       <---------HSFB2a(1)                       --------->HSFB2a(1)                      ----------->ARR10                    --------->LBD16                  <---------LBD16             ---------->DOF2                 <---------ANAC46           --------->ANAC58                 <---------ANAC58           --------->ANAC46                 <---------ANAC58           --------->ANAC58     --------->ATHB12<------NtERF2 <----------DOF2                              ------------>CBF   --    <---------YAB1--------->LBD16  <---------DAG2                       <<<<<<<<<EIN3             --- ---DOF2      <-------PIF5      --------->ARR11(3)                     ----------->GT1         <----- --------GT1  ------->PIF5<-------TEIL  <-----------GT1            ------------>CBF        <---------   aacagtgtgattagcacttgcgcggagattcggagagcttttttacaagaaagcacagtagaaaaatcaaacaatgtataaaaccaatttcaacttttat  25104600                                                                                          <----------                                                                                         <---------O2                                                                                         --------->O2                                                                                         ============                                                                            <---------AHL20(2)                                        ----------->RAV1(1)         --------->At5g28300  --------->TGA1a                                  ---------->DOF2                 --------->ZAT6         --------->ANAC46 ------->LBD16               --------->ANAC58          <---------YAB1       --------->AHL20(2) -------------->AGL2         --------->ANAC58        --------->YAB1----------->GT1       <---------TGA1a ------GT1  --------->YAB1   <---------ANAC46      ------->TEIL  <---------At5g28300     --------->bZIP60(2) -DOF2   --------->YAB1   ----------->HVH21     <---------ATHB12<-----------GT1   <---------AHL20(2)   ccccaaaccagtaatcacagcaattgaagtgacgcataaagacaacacaaatgaatcataaatgttttacagtaaaatttatatataatccacgtcgctc  25104700                                                     --------->STY1(2)                             <-                                                  --------------------->WRI1             <---------ANAC58                         <---------YAB1           <---------ANAC58                       <---------ANAC58                      <---------MYB52(1)         --------->MYB52(2)                      <---------ANAC46                     <-------GAMYB       ----------->RAV1(1)           ----------->HVH21<---------LBD16                    <---------ANAC58--------->At4g35610           ------>ZmHOX2a(1) <-----------RAV1(1) -HVH21             <---------ANAC58<---------At4g35610     <-------TEIL   <----------DOF2        --- ============================MYC_MYB--------->ZAT2<---------ANAC58<---------LBD16------->TEIL     <--   ttattttcagcaattgtctcttccgttacaataacatcagctccaacatgttccttgctagattcatcctcgggtgacttttgaatctgttgcggttcaa  25104800  Previous    Next  AGI:  At1g67130.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G42430.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 25102925    to: 25104288    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g67140.1    Description:  binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO49307.1); similar to hypothetical protein OsJ_020624 [Oryza sativa (japonica cultivar-group)] (GB:EAZ37141.1); similar to hypothetical protein OsI_022329 [Oryza sativa (indica cultivar-group)] (GB:EAZ01097.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain HEAT (InterPro:IPR000357) Range:  from: 25104571    to: 25121035    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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