Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------ANAC58                                    -                                                <---------ANAC58                                    <                                           <---------DAG2                                           -                                           <----------DOF2                           --------->MYB46(3)                                          xxxxxxxxxxxxxxxx>smallRNA(i)              --------->ANAC58<                                         xxxxxxxxxxxxxxxx>smallRNA(i)               --------->ANAC58<                                <---------HSFC1(2)                          --------->YAB1         --                                --------->HSFC1(2)  <---------YAB1          --------->ATHB12       <-                   ------>ZmHOX2a(2)     xxxxxxxxxxxxxxxx>smallRNA(s)       -------->ATHB1  xxxxxxxxx                 <---------ARR11(3)  <-----------RAV1(1)<---------MYB46(3) <---------YAB1   ---------                 --------->ARR11(3)----------->RAV1(2)<---------MYB52(1)   <---------ATHB12<---------YAB1 --DOF2      <---------AtLEC2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->GLK1(1)------->GAMYB--   tatgggcaatggaatgcatgatctctattggcgatacttctggcgcttttgcttccgattgttcagacctgatttctatcattgacaaccaagacgattg  25060700              --------->ARR14(2)              <xxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->At4g35610          <------NtERF2          <---------At4g35610         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---------->RAV1(1) ---------RAP2.6(3) ----->NtERF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------DDF1<---------ARR14(2)                   <----------DOF2 xxxxxxxxxxxxxxxxsmallRNA(s)                      --------------->AGL15 ------->DREB2C(2)                              <-----------GT1            --------->TOE1(1) --------ETT(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------------AGL15   ------>ZmHOX2a(1) xxxxxxxxxxxxxx>smallRNA(fl3)    <----------DOF2---------->ID1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >ATHB12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <-----------GT1    <---------GLK1(1)              <--- ------->RAP2.6(2)       ------>ZmHOX2a(1)---------->ID1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   gccgacattcgcagcggaattggcatcctatcgctctttagtttgtttttttcctttttttgtattagatttcttcctcgtagttctaatactcgaacag  25060800                                                                                               xxxxxx                                                                                 ---------->DOF2xxxxx                                                              xxxxxxxxxxxxxxxx>smallRNA(s)     <-----                                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxx                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxx                       --------->ANAC58                <---------MYB46(3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <---------HSFC1(2)                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ARR11(3)             --------->HSFC1(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----------DOF2             --------->HSFB2a(1)                 --------->YAB1             -------->P<-----------ARR10             <---------HSFB2a(1)              xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxsmallRNA(se3)           ---------->DOF2                 --------->AtLEC2  ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxx         <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) --------->HSFB2a(2)  --     <---------At4g35610         <----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ARR11(3)     --------->At4g35610        <---------DAG2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->GLK1(2) ------GLK1(2)         --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <---------HSFB2a(2)xxxx   attgtttagctaagaaagttcgggctcgtaatagccttttcttccatgtaagcatattggttcctgaatggctctctctaccagaaagtatctttccgat  25060900                                                                                    <---------At4g35610                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 <---------At4g35610                                                                                 --------->At4g35610                                                                               --------->TGA2(1)                                                                               <---------TGA2(1)                                                                               --------->bZIP60(1)      <---------YAB1 <------ZmHOX2a(1)                                      ----------->HVH21      <---------AHL20(2)                                                  ----------->GT1      --------->AHL20(2)     --------->AHL20(2)                           <---------ANAC58    ==========================================================================MADS_MADS    <---------------AGL15  --------->AHL20(2)                             <---------ANAC46 xxxxxxxxxxxxxxxxx>smallRNA(i2)                                           <---------ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      --------->ALFIN1 ----MYB52(1) <---------MYB46(3)                                     <---------ANAC58      --------->ATHB12 xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <---------------AGL15 --------->At4g35610 xxxxxxxxxxxxxxxx>smallRNA(i2)                  --------->TOE2(3)    <---------ANAC58  --------->LBD16 >smallRNA(si3)     ----------->GT1             --------->ANAC46    <---------MYB46(3)--------->RAP2.6(2) ------->TOE2(3)   <---------TOE2(3)        <---------ALFIN1  <----------DOF2  <---------bZIP60(1) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(2)   <---------ZAT18<------NtERF2--------->RAP2.3(2)   aacttaatataaatggtgtttgaggaaaaaaaaatataaaaaaatcacaccctcaatctgtgtgctttaatgggtggggtgacatcagccgcatgatttc  25061000                      ----------->GT1                      --------->bZIP60(1)         ------>ZmHOX2a(2)              <-----------GT1        <------ZmHOX2a(2)             <---------DAG2                                      <----------        --------->GLK1(1)      ------->GAMYB                                          <---------AHL20(2)       <---------AGP1 <---------bZIP60(1)                                         --------->YAB1       --------->ARR11(3)     --------->MYB46(3)                                 <---------ATHB12       <---------ARR11(3)     <---------MYB52(2)    --------->YAB1             --------->WOX13(1)      --------->RVE1(1) ----------->HVH21  <----------DOF2                   ------------>CBF   ---------->DOF2    <---------O2    <----------DOF2                     <---------AHL20(2)    <---- xxxx>smallRNA(fl3)   <---------bZIP60(2)  <---------DAG2------------>CBF--------->AHL20(2)----------   agagctaaagatctctacaatgtgatgtgacaacaaactactttactttatttttcataaccaatttatgcattataaaatcaatcatattatttcaata  25061100      --------->ANAC58  --------->TOE2(3)  <-----------HVH21                                                                      <---------MYB46(3) --------->ANAC46              --------->CCA1(2)                                         ----------->GT1 -GT1 --------->ANAC58    ---------->DOF2                     ----------->GT1      <-----------HVH21 -----ARR11(3)    <---------At5g28300                      <---------ANAC46        <-----------TGA1 -->CBF          <-----------GT1          *TSS           <---------ZAT14   <----------DOF2   tcaacgtcaagtcatcgatttaccctgtaaaagatagacctgtagtttacgagttggagttaagtggtttcaaatttctttttctcgtcagtggttacaa  25061200                                                                --------->ARR11(3)                  -                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <------ZmHOX2a(1)                     --                   --------->TOE2(3)                <-----------HVH21                              <-                   --------->YAB1               <---------ARR11(3)                               ----       <---------AHL20(2)      ------>ZmHOX2a(1)--------->ARR11(3)                             <-----      --------->AHL20(2)<---------At4g35610     --------->GLK1(2)            <---------MYB52(1)------   acttacaatttaaaatttttatcttaagctctcctctcttctctctccaaaatctttcagagaggagagcttgataatcgttttgtctccagtttgatcc  25061300                                                                <---------At5g28300                                                        ------>ZmHOX2a(2)                                                       --------->HSFB2a(1)                                                       <------ZmHOX2a(2)                                                       --------->GLK1(1)                                                      <---------ARR11(3)                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                      <---------ARR11(1)                                  --------->ATHB51    --------->ARR11(3)                                  <--------ATHB1      <-----------ARR10                             <                                  <---------ICU4     <---------CCA1(2)                            --- -------->GLK1(1)                 --------->AHL20(2) <---------ARR14(1)                        ------ ------->ARR14(2)                 --------->YAB1 <---------ARR14(2)           <---------MYB52(1) ---- --------ARR14(2)            <------ZmHOX2a(2)--------->ANAC55(2)       ----------->HVH21      <----- ----->LBD16                <---------ARR11(3)<---------ANAC55(2)--------->DEAR3(2)       <---------MYB52(1) ----LBD16      <---------CCA1(2)<---------ATHB51--------->ARR14(2) ------>MYB83 <----------DOF2<---- >ZmHOX2a(2)    ---------->ID1   <---------ATHB12--------->MYB52(1) ------>MYB46(1)  <-----------GT1-   ggatttgtttatattctcgtctctatgcgagatcaataatttccgattacatatcggatcttctgttaccgactatgaccggtcttttctccgtttttaa  25061400                                                              <-----------RAV1(1)         <----------DOF2                                    <----------DOF2        ------>ZmHOX2a(2)             ------>ZmHOX2a(2)    ------>ZmHOX2a(2)      <---------ARR11(3)      --------->MYB46(3)          <------ZmHOX2a(2)      --------->ARR11(3)      <---------MYB55(2)         --------->AGP1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <---------AGP1                             - ---------ARR14(2)           --------->ANAC58            --------->ARR11(3)                         < ---->GAMYB                  --------->ANAC58            <---------ARR11(3)                     <---- --->MYB52(1)               <xxxxxxxxxxxxxxxxsmallRNA(s) <-----------ARR10                      <---- ----->ANAC46            <---------ANAC58                --------->ARR14(2)               <---------ARR11(3) ------GT1               <---------ANAC58                --------->ARR14(3)               --------->ARR11(3) -----LBD16             <---------At4g35610              <---------ARR14(3)            <-----------GT1 -------->ARR14(2)  <-----------RAV1(1)                  <---------ARR14(2)    <---------ANAC46------   cggaacttgatctttatctccattgttgctcacccatcgatctcaacgttttcttccaagatctttgttgtctccatttcttcgtggattaacatcttcg  25061500                                                                                  <---------ARR14(2)                                                                                --------->LBD16                                                                               --------->ANAC46                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                               --------->LBD16                                                                              ----------------->AGL1                                                                              ----------------->AG                                                                              --------->HSFB2a(2)                                                                              <---------HSFB2a(2)                                                                             <---------LBD16                                                                          --------->ATERF1(1)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                     --------->ALFIN1      <---------MYB52(1)                                             <---------ANAC46 --------->DEAR3(1)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->At4g35610                          --------->REM1(1)     <---------MYB46(3) ---------At4g35610     <xxxxxxxxxxxxxxxxsmallRNA(i)               --------->MYB55(2) -------HVH21    --------->ANAC58       --------->ZAT6            <---------DEAR3(1) -------TGA1     --------->ANAC46   <----------DOF2               <---------AtMYB61   ----------->GT1 --->ANAC46      --------->ANAC58 ------->TEIL    <---------YAB1  --------->ALFIN1--------->ARR14(2)-   tcacctccgattgctcaagacgcaagagcaaaaatggactttagactacatcaagatagatgtaatcggtggtggagtctcccgaaactggtgattccaa  25061600  Previous    Next  AGI:  At1g67105.1    Description:  other RNA Range:  from: 25061142    to: 25061927    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version