Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <-----------GT1                  --------->ARR14(1)                                     <---------AHL20(2)<---------ARR11(3)      ---------->DOF2                             <---------ALFIN1          --------->ARR11(3)<-------TEIL                        --------->ANAC58              --------->YAB1   <---------ARR14(2)                        <---------ATERF1(1)          <---------ATHB12  --------->ARR14(2)                        --------->ANAC58<---------------------WRI1     --------->ARR11(1)       -----            <----------DOF2----------->RAV1(1) <-----------GT1       ----------->ARR10----------->GT1   gtctcaaacttcttctttccaatcggaggccacacctattttttcgatttttccaatgatattagtttatgtagattcgaagaaagaaccgaaaaaaatc  25052700                                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               <---------MYB52(1)                                                              <-------GAMYB                                                             <---------MYB46(3)                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                             --------->DEAR3(1)                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <             --------->DAG2                         --------->ZAT6    <---------YAB1                -         --------->AHL20(2)               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <-         --------->YAB1                  <---------AtLEC2  --------->LBD16                         <-      ----------->GT1                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->YAB1          <---------AHL20(2)  <-----------GT1 <---------ANAC58                <--     --------->ICU4           --------->AHL20(2) --------->ZAT14  <---------ANAC46    <-------GAMYB<- ----------->GT1  ---------->DOF2    --------->At4g35610   ------>NtERF2   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->YAB1  ---------->DOF2   <---------YAB1    <---------MYB52(1)<---------ANAC58    <xxxxxxxxxxxxxx   atatggaataataaaaaagtgaaagaagaaatataaatgacctgcatgcagttaactcttccgccgttgcttgtgatggaagtaatgtcgttgttagcct  25052800                                                                            --------->TOE2(3)                                                                      --------->ANAC58      <---------ANAC58                                            <---------------------WRI1      <---------ANAC46                                            <------NtERF2      <---------ANAC58                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <------NtERF2                                               --------->LBD16    --------->MYB55(2)                                         <---------LBD16<xxxxxxxxxxxxxxxxxxxxxx    <---------MYB46(3)                                   <---------ANAC58  --------->MYB46(3)   <---------DEAR3(1)                                    <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   --------->ALFIN1                                      ----------------->AGL1 ---------MYB46(3)                                       ----------->RAV1(2)--------->YAB1 -------->LBD16                                          <---------ANAC58 <xxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------ANAC58                   <-------GAMYB         <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ANAC46 --------ANAC58  --------->At4g35610  ---------->DOF2  --------->ZAT18<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------LBD16    <---------At4g35610 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58 --------ANAC46  <------NtERF2    --------->At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(s) <---------LBD16 xxxxxxxxsmallRNA(se3) <------ZmHOX2a(1)             <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->At4g35610   tgcgggtggctgggaaggcagcggaggacttaagtccgttgaaaggagcgaccatagtggcctgagccggagaggcaaccatagtagcggaagagagcat  25052900                                                                        --------->YAB1                                                                        -------->HAHB4                                          <------MYB83                  <---------ICU4                                          <------MYB46(1)              --------->ICU4                              ----------->HVH21          <<<<<<<<<<WRKY43                            <---------ANAC58             <<<<<<<<<<WRKY26   --------->ANAC58         <---------ANAC58        <----------DOF2  --------->YAB1           <------   --------->ANAC58     <----------DOF2  --------->MYB59 <<<<<<<<<<WRKY38           --------->YAB1 <------ZmHOX2a(1) <-----------GT1       <---------AtMYB61          <---------AHL20(2)     --------->ANAC58 xsmallRNA(i2)   <----------DOF2    <---------TOE2(3) <---------AtMYB61<---------YAB1      --------->ANAC58   agaggaagccattgttcttctttactctttgtgtgactgaggtttggtctagtgctttggtcatctatatataatgataacaacaatgagaacaagcttt  25053000                                                <---------ALFIN1                                            <------ZmHOX2a(2)                                           --------->ARR14(2)                                           <-----------ARR10                                           --------->ARR11(3)                                           <---------ARR11(3)                                   --------->ZAT14                             <-------TEIL  <---------ARR14(2)          <---------GLK1(1)                            --------->GLK1(2)   --------->ANAC46      <---------ARR14(2)                    <-------TEIL   --------->ZAT18                    --------->ARR14(2)            -                 ==================================HOX2a_HOX2a <---------ANAC58                    --                 ===================================HOX2a_HOX2a<---------ANAC46                  ----     ------>ZmHOX2a(2)      --------->CCA1(2)------>ZmHOX2a(2) <---------ANAC58            <---------ANAC58     ===================HOX2a_HOX2a<---------ZAT18   <---------MYB52(1)--------->CCA1(2) <-----------GT1  --------->ATHB12 --------->CCA1(2)      <------ZmHOX2a(1)  <---------YAB1     ----------->GT1  <--- ----DOF2        <------ZmHOX2a(1) <---------ZAT14  <-------GAMYB--------->ALFIN1      *TSS<---------ANAC58   ggagtgatcggagggtctaggatacatgagattcaagtggactaggatctacaccgttggattttgagtgtggatatgtgtgaggttaattttacttggt  25053100                                                                  --------->ALFIN1                                                                 <-------MYC4                                                                 ------->MYC4                                                                 <-------MYC2                                                                 ------->MYC2                                                                 <-------MYC3                                                                 <-------PIF5                                                                 ------->PIF5                                                                --------->O2                                                                --------->PIF3(3)                                                                <---------O2                                                                <---------TGA1a                                                                <---------ANAC46                                                                <---------PIF3(3)                                                                --------->TGA1a      ---------->DOF2                                           <<<<<<<<<<HY5   ----------->RAV1(1)                                       ---------------->PIF3(2)   --------->RAP2.6(2)                                   <---------ICU4 ------>GAMYB                                           <<<<<<<<<<<<<<<<<<<<HY5              -------- ------->MYB46(3)      --------->ALFIN1          --------->At4g35610    <---------ARR11(3)   <------- ----->MYB52(1)     <---------AtMYB61          --------->MYB46(3)------->MYC3       ------->TEIL    < ------DOF5.7(2) <------ZmHOX2a(1)   --------->RAP2.6(3)--------->ICU4  --------->ARR11(3)  ---------   aacggccacaaaggcctaaggagaggtgttgagacccttatcggcttgaaccgctggaataatgccacgtggaagataattccatgaatcttatcgttat  25053200                                                                         <---------LBD16                                                                     ------>ZmHOX2a(1)                         <---------AtMYB61                         <-----------------AGL2                         --------->ALFIN1            <---------ZAT18--------------->AGL15                       <---------ANAC58              --------->ZAT18<---------------AGL15                       <---------ANAC58        <---------ANAC46    ----------------->AGL1                       <---------ANAC46        <---------AtLEC2    ----------------->AGL2                  <---------MYB46(3)       <---------ANAC58        <-----------------AG                 <---------AtMYB61         <---------ANAC58        <-----------------AGL1 ->DOF5.7(2)<---------ANAC58  <---------ANAC58 <---------ANAC58    ----------------->AG       <------ --MYB52(1) <---------ANAC58  <---------ANAC58 ----------->RAV1(2)<-----------------AGL1<-----------GT1 ---------YAB1----------->HVH21          <-----------GT1    ---------->ID1       --------->AHL20(2) >TOE2(3)   <---------ANAC46 <---------MYB46(3)<---------ANAC58 <----------DOF2  <---------AHL20(2)   ctatgagtgaaattgtgtgatggtggagtggtgcttgctcattttacttgcctggtggacttggccctttccttatggggaatttatattttacttacta  25053300            <----------DOF2                          <-------TEIL           <---------DAG2                <---------AHL20(2)   <---------AHL20(2)                <----      --------->YAB1                  --------->AHL20(1)     --------->YAB1             <---------ZAT6   <----------DOF2 <-----------GT1    <---------AHL20(1)<---------YAB1            <---------------AtSPL3 ---YAB1<---------CCA1(2)      ----------->GT1   <---------YAB1    ----------->GT1<---------------AtSPL8   tagagctttcataccttttttttaccttggatttagttaatatataatggtatgattcatgaataaaaatgggaaatttttgaatttgtactgctaaatg  25053400                                       <---------AHL20(2)                                       --------->AHL20(2)                                    ==========================================MADS_MADS                                    --------------->AGL15       <------MYB46(1)              <---------------AGL15       ----------->GT1        <---------AHL20(2)       <---------ANAC46     <---------AHL20(2)       <---------ANAC55(2)<---------AHL20(2)                          <---------------AGL15       <------MYB83    <---------AHL20(1)              <---------DAG2 <---------YAB1                -      --------->MYB46(2) --------->AHL20(1)         <-----------GT1 --------->YAB1   <---------AHL20(1)      --------->MYB111(1)<---------AHL20(1)--------->ANAC58   --------------->AGL15  --------->AHL20(1)      --------->MYB59  --------->ARR11(3)  --------->ANAC58   --------->HSFB2a(2)   --------->AHL20(2) ---TEIL               <---------ARR11(3)---------->DOF2<----------DOF2      ----------->GT1       --   cataagattaggtgaaactgtggaatatatatttttttcatttaaaagcaaaatttgccttttactagaattataaatatagaaaaatatataacattca  25053500               --------->ARR11(3)            --------->YAB1                                                                       ----      --------->YAB1                                                    <---------At4g35610   -------     ----------->GT1                                                    --------->At4g35610   ------- <---------AHL20(2)       --------->MYB52(1)                       --------->ANAC58           ------- -------->YAB1 <---------ARR11(3)       <---------AHL20(2)  <---------ALFIN1             --------->REM1(1) ------->AHL20(2) <----------DOF2   <---------YAB1--------->ICU4   --------->ANAC58<---------ARR11(3)   aataaaaatgaaaataagaactttcaaaaaacagaactatgtttaatgtgtaaagattagtcgcacatcaagtcatctgttacaatatgttacaacaagt  25053600  Previous    Next  AGI:  At1g67090.1    Description:  RBCS1A; ribulose-bisphosphate carboxylase. Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (RBCS-1A) [Arabidopsis Thaliana] (GB:P10795;GB:Q94JW2;GB:Q9FPI6;GB:Q9SAV4); similar to ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) [Arabidopsis thaliana] (TAIR:AT5G38430.1); similar to ribulose-1,5-bisphosphate carboxylase /oxygenase, small subunit; ribulose-bisphosphate carboxylase [Brassica napus] (GB:CAA53083.1); similar to Ribulose bisphosphate carboxylase small chain F1, chloroplast precursor (RuBisCO small subunit F1) (GB:P27985); contains InterPro domain Ribul Range:  from: 25051821    to: 25053087    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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