Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------TOE1(3)                                                                      <---------TOE2(3)          --------->ANAC58                                        <----------DOF2              ------          --------->ANAC58                                     --------->ARR11(3)            <-------        <--------P                                             <---------ARR11(3)           <-------- --------->ARR14(2)                                         <-----------GT1                <--------- <---------ARR14(2)                                        <-----------GT1             <------------- ----->MYB83                                              --------->AHL20(2)           -------------- ----->MYB46(1)                  ----------->RAV1(1)      <---------AHL20(2)      ---------->DOF2   ccaaatactggtaagtcatatacagactcattctccaacatttcagtgactataacgaaattaaacatctttaaggcatggatttaaagctaattacggt  24857400    ---------->DOF2  ------>ZmHOX2a(1) --------->TOE2(3) --->At5g28300 --TOE2(3)                       --------->YAB1 -At5g28300           ----------->RAV1(1) --GT1             --------->ANAC58                                                      ---------->DOF2 --AGL15           --------->ANAC46    --------->YAB1       ----------->RAV1(1)   <---------MYB52(2) ->AGL15           --------->ANAC58  <---------ARR11(3)  --------->YAB1  <---------GLK1(2)   aatcctaaaagtctaacacatatgcaacattctcatcaaaatcatacataaacccaaaatcacaacagttttcaaaattctcaaacaaacccaaagaagg  24857500                                                        <---------ANAC58                                                        --------->ANAC55(2)                                                        <---------ANAC46                                                        <---------ANAC58                                                    <---------ANAC58                                                    <---------ANAC58                                                <---------ANAC58                                                <---------ANAC46                                                <---------TGA1a                                                <---------ANAC55(2)                                                --------->ANAC55(2)                   ------>ZmHOX2a(2)                                                <---------O2                         <------ZmHOX2a(2)                                                --------->TGA1a                     <---------AGP1                      --------->ANAC58          --------->O2                        --------->ARR14(2)                      --------->ANAC58      <------ZmHOX2a(1)                       --------->AGP1                  ----------->GT1        --------->CCA1(2)            <----------ID1<---------ARR14(2)                 <---------------AtSPL8 <---------ARR14(2)----------->HVH21         <---------ARR11(3)             <------ZmHOX2a(1)    <---------HSFB2a(2)   <---------ANAC55(2)         --------->ARR11(3)         --------->ICU4          <---------LBD16<---------ANAC58--------->MYB46(3)----------->ARR10 <   aagagtgagtgatgaggaagaggtaagaaacaatacctggaagataggagacgtgagtgcgtgacaacaaatgggacaatcgagtagatctagctcgaac  24857600                                                                                          <---------HSFB2a(1)                                                                                   <------MYB83                                                                                   <------MYB46(1)                                                                                  <---------MYB46(3)                                                                                <------NtERF2                      --------->DEAR3(1)                                        <---------At4g35610                <------NtERF2                                                   --------->ATERF1(1)               <---------ATERF1(1)                                              --------->At4g35610               ------>NtERF2                                                    <-------GAMYB              --------->DEAR3(1)                                                <---------ZAT2              <---------ALFIN1                                                 <---------DEAR3(2)             --------->ATERF1(1)                                               <---------ATERF1(1)             <---------ABI4(2)                                                 <---------MYB46(3)             <------NtERF2                                                     --------->MYB55(2)            <---------ATERF1(1)                                                <---------RAP2.3(1)            ------>NtERF2                                                      ------>NtERF2           --------->ANAC46  ------>NtERF2                                    <---------RAP2.6(2)           --------->ANAC58  --------->LBD16                              <---------At5g28300           --------->ANAC58 --------->DEAR3(1)                            --------->SPL7  --------->HSFB2a(1)         ------>ZmHOX2a(2)  --------->ANAC46                    <-------MYC3  <---------RAP2.3(3)   <        <------ZmHOX2a(2)   --------->ANAC58     <---------ALFIN1       ----------->HVH21 --------->HSFC1(2)       <---------ARR14(2)   --------->ANAC58     --------->ZAT6 ------->MYC3  <---------RAP2.3(2)   -       --------->ARR14(2) ------>NtERF2    --------->ARR14(2)  --------->ANAC46<---------ERF1     ---    --------->HSFB2a(2)   <---------ATERF1(1)  <<<<<<<<<<<<<<<<<LFY ----------------->AGL1<---------HSFC1(2)    <---------HSFB2a(2)  --------->DEAR3(1)<---------ARR14(2)  <---------O2 <---------RAP2.3(1)   --- -----------HVH21--------->DEAR3(1)    <---------LBD16       <---------ALFIN1 <---------DEAR3(1)<----   aatgtcccagatcgcgccaccgcatcgcctccgccattttctacggattcaacactggaaggaacacgttgcctcttacggcggctggtcgaagcttctc  24857700                                                                                              -------                                                                                          <------NtERF2                                                                                         --------->LBD16                                                                       <---------DAG2   --------->LBD16                                                                       <----------DOF2  --------->RAP2.6(2)                                                             --------->TOE2(3)          --------->RAP2.3(2)              --------->GLK1(1)                           <-----------GT1              <------NtERF2        --------->MYB52(1)                              <----------TaMYB80             <---------LBD16 ---------ARR14(2)                                     <---------ARR14(2)             ------>NtERF2 -------->ARR14(2)                                     --------->ARR14(2)             --------->LBD16 -------->HVH21            ----------->ARR10           <-----------ARR10             --------->ANAC46 ------>LBD16--------->ARR14(2)                        ---------->TaMYB80        <-----------GT1 -----LBD16  <---------ARR14(2)                     ----------->GT1   <---------DAG2<---------LBD16   cggacatggctatcggatttcgatgggattagcttcgctacaatgtcaatagatgagtatataccctaatcgcctttttctattttcccgccggaatggt  24857800                                                                           --------->AHL20(2)                                                                          <---------YAB1                                                                       --------->AHL20(2)                                                                       <---------YAB1                                                                    --------->ARR11(3)                                                                    <---------AHL20(1)                                                                    --------->AHL20(1)                                                                    <---------AHL20(2)                                       --------->AHL20(2)           --------->AHL20(2)                                       <---------AHL20(2)           <---------ARR11(3)             <-                            <-----------HVH21  --------->YAB1  --------->AHL20(2)                  <-                         <---------ANAC58    --------->AHL20(2)<---------AHL20(1)                  --                         <---------ANAC58   --------->YAB1     --------->AHL20(1)                  --                --------->GLK1(2)   --------->WOX13(1)    --------->AHL20(2)             --------->AHL20(2)                *TSS    <---------MYB46(3) --------->AHL20(2) --------->YAB1   <---------AHL20(2) ---    ---------->DOF2  <-----------RAV1(1)<---------AHL20(2)<---------AHL20(2)<---------AHL20(2)    <-- ---->GT1      <---------GLK1(2)  ------------>CBF      --------->YAB1 <---------AHL20(2)<---------AHL20(2)   ttttcagaaaggtttcagaatctctgtgggtgtcatagcaattaaataaaaataactaaaataaatataatatattattatataatggtattaaaacacc  24857900          --------->YAB1         <---------YAB1      <---------AHL20(2)      <---------YAB1      --------->AHL20(2)   <---------AHL20(2)   --------->AHL20(2)   --------->AHL20(1)   <---------AHL20(1)  <---------AHL20(2)  --------->YAB1  --------->AHL20(2)                                <---------ICU4 <---------YAB1          --------->YAB1            --------->ICU4 --------ICU4         --------->WOX13(1)           <---------YAB1                                  -- -------HAHB4      <---------ARR11(3)            --------->YAB1                                    <- ------->ATHB51    --------->ARR11(3)          <---------WOX13(1)                                 --- ------->YAB1   --------->AHL20(2)           --------->ATHB12         --------->DAG2           ------ ------>ICU4 --------->YAB1                 <---------YAB1           ---------->DOF2        --------- -------YAB1<---------YAB1                  --------->ICU4      <---------YAB1 <---------ATHB12------   ataattatattattatgataaaatctatcaaaaattagtcaaaaacatgattgataattaagaactatgaataaagttccaaacatgtattcaaaaatta  24858000                                     --------->AHL20(2)                                    <---------AHL20(2)                                 --------->AHL20(2)                                <---------AHL20(2)   --------->YAB1               --------->AHL20(2)  <---------YAB1             <---------AHL20(2) ------->AHL20(2)            --------->AHL20(2)                                        --------->AHL20(2) --------AHL20(2)         --------->YAB1                 <---------KAN4(2)     ----------->GT1 ------>AHL20(2)       <----------DOF2   --------->YAB1 --------->YAB1      <----------DOF2 --->AHL20(2)       <-----------GT1 --------->AHL20(2)<---------TOE2(3)    <---------ANAC58 >YAB1----------->GT1  --------->TOE2(3)--------->AHL20(2)                 <---------ANAC58 --->YAB1    ----------->GT1--------->AHL20(2) --------->YAB1      ---------->DOF2 --------->AHL20(2)   taaaattatagtaaaatgtttattactttaataaataaataaataaaaatcatactaagaataaacaaataaagtttgcttttgttaaaataaacataga  24858100                                                        --------->ATHB12                                                  <---------AHL20(2)                                                 <---------AHL20(1)      --------->AHL20(2)                                                 <---------AHL20(2)      <---------AHL20(2)                                             <---------AHL20(2)         --------->AHL20(2)                                           --------->CCA1(2)         <---------CCA1(1)             <-                                          <---------ARR11(3)        <---------ARR11(3)             --                                          --------->ARR11(3)  <---------ZAT6                   ------                                      ---------->DOF2  <---------YAB1<---------RVE1(1)     --------->LBD16                                 ----------->GT1 --------->AHL20(2) --------->ARR11(3)   <---------LBD16   aaactatgaaattagttagaatattgtttttttttttgttaaaagatataattttttttgattagtgtgagatatttaatcaaacaagttttgcgcaaaa  24858200                              ----------->RAV1(1)                              ------>MYB46(1)                              ------>MYB83                           --------->ANAC58                                                   <------MYB83                           --------->ANAC58                                                   <------MYB46(1)                           --------->ANAC46                                          --------->YAB1   <---------ICU4    --------->ANAC46                                         <---------ARR14(2) --------AHL20(2)    --------->ANAC58                               <---------ARR11(3)    <---------- ------->AHL20(2)    --------->ANAC58<-----------GT1<------ZmHOX2a(1)         --------->ARR14(2) --->ICU4      <------ZmHOX2a(1) --------->YAB1   <---------TOE2(3) --------->ARR11(3) ------>ZmHOX2a(1)   attaaaaattagaactaggaaacacacaaacccaacaataaaccctagcacttaggaagactcttgatgaaatcttgccaaatccaatcctattgttggt  24858300  Previous    Next  AGI:  At1g66620.1    Description:  seven in absentia (SINA) protein, putative. Identical to Putative E3 ubiquitin-protein ligase SINA-like 2 [Arabidopsis Thaliana] (GB:Q9C6H3); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT1G66630.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 24856469    to: 24857816    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version