Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          >>>>>>>>>>>>>>>>>LFY                                      --------->At4g35610               <----------DOF2                              --------->ANAC58                         <---------ANAC58                          --------->ANAC58                             <---------ANAC58            <-                    <xxxxxxxxxxxxxxxxsmallRNA(i)                 <-----------RAV1(1)              <--           <---------ICU4 --------->ANAC58                  <---------At4g35610                 xxxxx ----YAB1 <---------AHL20(2)  --------->ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ---------   attctcgactaaataatgtccaagatggaagcaagacataagctccattgttgatagaatggagcttatgttggcttttgtttttgtttcaaaatggttt  24842400                                xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xxxxxxxxxxxxxxxx>smallRNA(i)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            --------->ZAT18                            <---------ZAT18                           <xxxxxxxxxxxxxxxxsmallRNA(i)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                          xxxxxxxxxxxxxxxx>smallRNA(i)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxsmallRNA(i)                    ----------------->AGL1                    ----------------->AGL2                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ----------------->AG                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxx>smallRNA(s)               <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <---------WOX13(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->ATHB12<xxxxxxxxxxxxxxxxsmallRNA(i)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ------->TEIL         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------YAB1     <---------ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(i)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->CCA1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) <---------YAB1 ----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <<<<<<<<<RAP2.2  <-----------GT1 ---------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ------>ZmHOX2a(1) -->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <-----------HVH21   ttaacttatgtgtgattgcttagccaaatgtggactctgaagatggttttcagttttagatatgaatgtccttgttactattgttacacagtcacacaga  24842500                                                                                                  ---                                                                                                  <--                                                                                               <-----                                                                                              <------                                                                                              -------                                                                                              <------                 --------->ATHB12                                                             -------                 <---------ICU4                                                               -------                <---------YAB1                                                                <------              --------->YAB1                                    <---------AtLEC2             --------         <------ZmHOX2a(2)                                    --------->ALFIN1     <---------HSFC1(1)         <---------YAB1                              <----------DOF2               --------->HSFB2a(2)        --------->ARR11(3)                        --------->ARR11(3)               <---------HSFB2a(2)        <---------ARR11(3)                        <---------ARR11(3)               --------->HSFC1(1)    ---------->DOF2                     --------->YAB1      <---------ANAC46   ------->GAMYB -------- xxsmallRNA(se3)--------->ICU4 <----------ID1    <---------CCA1(2)          <-----------GT1  --------   gtttacaaaagatcattcatcattgtttataagagaacaaattgataacatatatctttttgatgtggatggatttgttaaccctctagaagaacaccca  24842600        ---------->DOF2 ------>ARR14(2) -------ARR14(2) ----------AGL15 -----------AG ---------->AG -----------AGL2                                                                            <<<<<<<<< ---------->AGL2                                           --------->AHL20(2)         <---------ANAC46 ---------->AGL3                                          --------->YAB1              <---------ANAC55(1) -----------AGL3                               --------->WRKY45         ------>NtERF2 <---------ANAC58 ->ANAC46                                    <----------DOF2 --------->YAB1           <---------ANAC58 ->ANAC58          <---------ALFIN1    <----------DOF2   --------->AHL20(2)    --------->AHL20(2) ->ANAC58        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->YAB1 --------->TOE1(1)  --------->REM1(2)   aatttggctacaaagttgtcaacacattgttcttcgttcttctttgactttgactaaaaataaaaataaacctcggcctaagaaaatagcgtgttcacat  24842700                                                                <---------At4g35610                                                                --------->At4g35610                                                                ----------->GT1                                                               --------->ANAC58                                                               --------->ANAC58                                                           <---------ANAC55(2)                                                           <---------ANAC46                                                           <---------ANAC55(1)                                                           --------->ANAC55(2)                                                           <---------ANAC58                                                           --------->ANAC58                      ----                                <---------ARR11(3)         <---------ANAC58               <---------ALFIN1                                --------->ARR11(3)         --------->ANAC58              ------>NtERF2              <---------WRKY18(1) >>>>>>>>>RAP2.2         --------->MYB59               --------->RAP2.6(2)  --------->ATHB12           --------->AHL20(2)         <---------ARR14(2)           <-----------GT1 <---------YAB1              --------->YAB1             --------->ARR14(2)<---------TOE1(3)     ----- <<<<<<<<LFY ----------->HVH21 --------->CCA1(1)        <---------MYB52(1)<---------TOE2(3)------->TEIL   tggatgattaaggcctggaccgagtatcaaataatatctaaatgggcctagctaagcagttacgtaagctaaatttagggtttgtttttgccgcacctat  24842800                                                          --------->CCA1(2)                                                         --------->ARR11(3)                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                         <---------ARR11(3)                                                        --------->GLK1(1)            <---------GLK1(2)                       --------->DEAR3(1)           --------->ZAT2                        <---------ALFIN1           <---------ZAT2                       -------->P<------ZmHOX2a(2)                        --           <---------At4g35610                  ------>MYB83                         --------->ARR14(2)       <---------ALFIN1                         ------>MYB46(1)                      <---------ARR14(2)  <-----------GT1           *TSS              --------->AtMYB61       <----------ID1 --------->ARR11(3) ----->AHL20(2)      --------->YAB1          --------->MYB46(3)       ----------->HVH21------>ZmHOX2a(2) ------>TBP--------->At4g35610             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ARR11(3)   aaaataacaacacagcttcccatttgtaatttctagggttttgcaaaaccaacaccgaagatccaacacgatgggacgaagtaagtcgatcttctcttct  24842900                                                                    --------->LBD16       --------->YAB1                                              <---------ANAC46       --------->TOE2(3)                  <------MYB46(1)          <---------ANAC58   --------->MYB46(3)                     <------MYB83             <---------ANAC58             -----  ------>MYB46(1)                <-------TEIL                      <---------ANAC55(2)          -----  ------>MYB83       <---------ANAC58     ----------->GT1   <----------DOF2             <---------ARR11(3) ----------->RAV1(1) <---------ANAC58  --------------------->WRI1  <---------ANAC55(1)  --------->ARR11(3) ------->MYB46(3)<---------GLK1(1) <-----------HVH21  <----------DOF2                 <---------TOE2(3)   caccaacaatctcaattcgaattccttgagttcgattcgtcatttggtagaatcgtcttttgctttaatccgtgtgaagaaatagtctaagatttcaatt  24843000                                        <---------ICU4                                      <-----------GT1                                     <-----------GT1                                    <---------AHL20(2)                          ------->GAMYB<---------YAB1                                           -----    --------->AtLEC2     --------->ANAC46                                       <---------TOE1(2) ---->YAB1               --------->ANAC58                --------->ICU4      <---------ANAC46-------- ---->AHL20(2)           --------->ANAC58         ----------->GT1 --------->ATHB12          <--------   atatcaatgcaaggtttttgtatatcaacgccattgattttatcatttcgaaatgtgaaatgttgaattgattcggttttcgtagaatcgtgtttcgtca  24843100                                                       --------->WOX13(1)                             <------ZmHOX2a(1)   <---------ICU4                            <---------YAB1--------->GLK1(2)      <-------TEIL         <---------TOE2(3) <---------YAB1 ---->WOX13(1)     <---------ANAC58      --------->ARR11(3)                          <---------MYB46(3) ->TOE2(3)         <---------ANAC58      <---------ARR11(3)                 ------->TEIL -ANAC46     <---------AHL20(2)        <---------TOE2(3)           <---------ANAC46<---------MYB52(1)   atctgtgattcatatgaaattgctaggcttaggattagtttgagattttgattatgtcaatctagggtttagtgtatgaatcgccattggtttgggtttt  24843200                                               --------->ATHB12                                              <---------YAB1                                   <-----                                            <----------DOF2                                 <--------                                         ------>NtERF2                                 <---------ARR11(3)                                  --------->ALFIN1                              --------->TOE1(2)  <-                                <---------ANAC58                              --------->ARR14(2)   --                                <---------ANAC58                             <------ZmHOX2a(1) <-----                   <---------TOE1(3)    --------->ANAC58                  <---------AtLEC2  <--------                   <---------TOE2(3)    --------->ANAC58       ----------->GT1<---------ARR14(2)<----        <---------TOE2(3)       <---------ANAC46 <---------WOX13(1)     --------->ALFIN1   <---------   ggatttgtttgaggtcattttagggtttttttttgtgtgtggacgcctttgattgaacaattccgatgtaaaatgtgcaggacctgcgagatgttaccgt  24843300  Previous    Next  AGI:  At1g66580.1    Description:  60S ribosomal protein L10 (RPL10C). Identical to 60S ribosomal protein L10-3 (RPL10C) [Arabidopsis Thaliana] (GB:Q93W22;GB:Q9C6H7); similar to 60S ribosomal protein L10 (RPL10B) [Arabidopsis thaliana] (TAIR:AT1G26910.1); similar to 60S ribosomal protein L10 (EQM) (GB:P93847); similar to unknown [Populus trichocarpa] (GB:ABK92819.1); similar to unknown [Populus trichocarpa] (GB:ABK95468.1); contains InterPro domain Ribosomal protein L10e; (InterPro:IPR001197); contains InterPro domain Ribosomal protein L10e/L16; (InterPro:IPR016180) Range:  from: 24842828    to: 24844275    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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