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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                           ------->GAMYB
                                          <---------MYB55(2)
                                          <---------MYB111(2)
                                          --------->MYB46(3)                    --------->SPL7
                                          <---------MYB52(2)                    ------->TEIL
                                         ------>MYB83                        <---------ANAC58
                                         ------>MYB46(1)                     <---------ANAC58
                                        ----------->RAV1(1)              --------->GLK1(1)
                                       --------->AtMYB61             --------->ANAC46
                                      --------->MYB46(3)             --------->ANAC58
                                      <---------ATHB12               --------->ANAC58    -----------
                                      <---------MYB52(2)             <---------ANAC55(2) <----------
                --------->YAB1        <---------MYB55(2)             --------->ANAC55(1) <----------DOF2
          --------->ANAC58           --------->ANAC58               <---------LBD16     --------->TOE2(3)
          --------->ANAC58           --------->ANAC58           <------ZmHOX2a(1)   <----------DOF2
          --------->ANAC46           ------>MYB46(1)            <---------PCF5<---------SPL7
        ---------->DOF2              ------>MYB83        --------->At4g35610--------------->AtSPL8
      --------->CCA1(2) ---------->DOF2------->GAMYB     <---------LBD16--------->ARR14(2)
   ----------->GT1  --------->GLK1(2)-------->P         ------->GAMYB--------->ANAC55(2)<-----------
--------->DOF2  --------->AHL20(2) --------->AtMYB61   --------->MYB46(3)<---------GLK1(1) <--------
---->TOE2(3)   <---------ATHB12   --------->MYB46(3) ----------->RAV1(1)<---------ARR14(2) ---------
 
ttaaaagagataaaagcaatgaaattctaaagactaaaccaaccaacaaacctgtccaacagcgggaggaccacggaactgcgtaccctttcctttaatt  24825600
                                --------->ANAC58                                                   -
                                --------->ANAC58                                                 ---
---->AGL15               --------->At4g35610                                                   <----
-----AGL15               <---------At4g35610                                                   -----
------AGL3               --------->ZAT14                              <---------WOX13(1)       -----
-AHL20(2)                <---------ZAT14  <---------YAB1            --------->ATHB12         <------
>AHL20(2)            <-----------GT1   <---------YAB1--------->MYB52(1)   <--------P         -------
 
agagaccatagtcccattgcattgttactgcagacaaacaatatgatgaattacacaaacagaaaacaacttaattggtagtttaagttggaagagtgag  24825700
                                                                         --------->ANAC46
                                                                         <----------ID1
                                                                         ----------->HVH21
   --------->YAB1                                         --------->ARR14(2)
-------->ATHB12                                           <---------ARR14(2)
-------->RAV1(1)                                         <------ZmHOX2a(1)----------->RAV1(1)
-----At4g35610                                    <-------TEIL   <---------DOF5.7(2)              <-
---->At4g35610                <------ZmHOX2a(2)<------MYB46(1) --------->DOF5.7(2)    --------->ARR11(3)
---->ZAT18                    ==================================HOX2a_HOX2a           <---------ARR11(3)
---ZAT18       --------->ARR14(2)              <------MYB83    <---------MYB52(1)     <-----------ARR10
-->ZAT18       <---------ARR14(2)             --------->MYB59----------->GT1<---------ALFIN1     <--
 
caccattggtaatctccaaatttgccaggctcgatcaagggctcaacattaggttcatcaggaaccgttaacttaagcgacacatcgaagagcttagcga  24825800
               ----------->GT1
               --------->LBD16                                                            --------->LBD16
           <---------ARR14(2)                                                             ------>ZmHOX2a(1)
          --------->GLK1(1)                                                              <---------LBD16
    <---------ANAC46                                                                    <---------LBD16
   <------NtERF2                                                                   <----------DOF2
 <---------RAP2.6(2)                                                          <-----------GT1
 <---------ANAC58                                                           --------->CCA1(2)
 <---------ANAC46                                                          --------->ARR14(2)
 <---------ANAC58                                                          --------->ARR11(3)
<------NtERF2<---------LBD16             --------->WOX13(1)        <------ZmHOX2a(1)    ----------->RAV1(2)
--------DEAR3(1)        <----------DOF2<---------YAB1      <---------YAB1  <---------ARR11(3)
------P   <---------GLK1(1)       <---------ETT(2)       --------->YAB1    <---------ARR14(2)
 
gttggcgtcttggatttccggtgaattctttactctgtcaacatcattcaacaaaaacagtcatgaaacaggaaggaagatttacactttctcctggatt  24825900
                                                                                             <------
                                                                                             -------
                                                                                             <------
                                                                                     ----------->HVH21
                                                                                    ------>ZmHOX2a(2)
                                                                                    --------->DEAR3(2)
                                                                       --------->ANAC58      -------
                                                                       --------->ANAC58     --------
                  <xxxxxxxxxxxxxxxxsmallRNA(s)                       <------ZmHOX2a(1)      <-------
             <---------ANAC58                                  --------->At4g35610 <------ZmHOX2a(2)
             <---------ANAC58                                  <---------ZAT14    <---------ARR14(2)
          <---------MYB52(1)                             <-----------HVH21   --------->MYB52(1)
        <---------ZAT6     <---------MYB46(3)    --------->At4g35610 =====================HOX2a_HOX2a
        ----------->GT1    --------->ATHB12   <---------At4g35610    ======================HOX2a_HOX2a
    --------->ZAT14<---------At4g35610        --------->At4g35610 --------->At4g35610--------->TOE1(2)
    <---------ZAT14--------->At4g35610     ---------->DOF2     <---------At4g35610--------->ARR14(2)
 
aaaaaactatactgttacttacagctacaatggttgccatcgaaattgaagcagaagactggtgagagcagaggaagccaaaacggatccgacgaataat  24826000
     <--------P
    <-------GAMYB
    *TSS             <---------ANAC58
  <---------TOE1(3)  <---------ANAC46
  <---------TOE2(3)  <---------ANAC58
--ATHB1           <-----------GT1
-->ATHB51     <---------AHL20(2)                                         <---------DOF5.7(2)
---ICU4       --------->AHL20(2)                            <---------AHL20(2)
-->YAB1<------MYB83<---------At5g28300               <---------DAG2    --------->DOF5.7(2)
->ICU4 <------MYB46(1)                      ------------>CBF--------->AHL20(2)                  <---
--ATHB51 ------------>CBF       ---------->DOF2      <----------DOF2  <----------DOF2      ---------
 
tgtttagggttggacaattttttaccgtgtttgacaaaagtcaaatttccaattcacttttattttaatcgggctttaacgagaggcccattattcattt  24826100
                                                       --------->ARR11(3)
                                               <---------AHL20(2)
                                              --------->AHL20(2)
                                         ------>ZmHOX2a(1)
                                        --------->TOE2(3)
                                  <---------At4g35610  <---------ARR11(3)
                              --------->ALFIN1<---------AHL20(1)                 <---------MYB52(1)
--------HVH21            <---------AHL20(2)   --------->AHL20(1)        <---------------AGL15
>ATHB12<---------ANAC55(2)  <---------ANAC46  <---------AHL20(2)  --------->MYB52(2)      ------->TEIL
 
gtcacaaaacacatgactagtttcaaaatttatgtgtagcagtccttaatttattcaatatctcgatgtttgtttctaaaatcagttttgttgaatctaa  24826200
                                                    <---------AHL20(2)
                                                    --------->AHL20(2)
                                                    --------->AHL20(1)
                                                    <---------YAB1
                                                   --------->AHL20(2)
                                               <---------AHL20(2)
                                              --------->AHL20(2)
                                       --------->AHL20(2)                             <---------ANAC55(2)
                                       <---------AHL20(2)                     --------->YAB1
                                     --------->CCA1(2)                        ----------->GT1
        <---------YAB1              --------->ARR11(3)                   <---------YAB1
     <---------AHL20(2)             <---------ARR11(3)         <---------AHL20(2)     --------->ANAC55(2)
 
atctatgttttatttttgaactatataaggcccatgtaagatataaatataaaattttattgatattttttgaattttgaatagtaaataagtaatctat  24826300
                                                                                                  --
                                                                                   --------->ANAC58
                   --------->AHL20(2)                                              --------->ANAC46-
                  --------->AHL20(2)                                               --------->ANAC58<
                  <---------AHL20(2)                                       --------->AHL20(2)    <--
               <---------AHL20(2)                                      --------->AHL20(2)       <---
              <---------AHL20(2)                                       <---------AHL20(2)      -----
              --------->AHL20(2)                        <-----------GT1<---------YAB1     <---------YAB1
          <---------AHL20(2)                            --------->ARR11(3) --------->YAB1--------->YAB1
          --------->AHL20(2)                           <---------CCA1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
         --------->AHL20(2)                         <---------AHL20(2)<---------AHL20(2) --------->TOE2(3)
  --------->AHL20(2)                               --------->AHL20(2) --------->AHL20(2)<xxxxxxxxxxx
 
acatttttaatatttaattaaataattttgttttaaacaaatttatgcattctattttatatctattctacattttaattatacacactcaatcttattg  24826400
<---------YAB1
------->YAB1
-------->ARR11(3)
---------ARR11(3)                          <---------AHL20(2)
-------YAB1                                --------->AHL20(2)
------TOE2(3)    ----------->GT1          --------->AHL20(2)           <----------ID1
---->YAB1        --------->YAB1<----------DOF2                  ----------->GT1
xxxxxxxxxxxxsmallRNA(i2)       <---------DAG2                 ---------->DOF2     <---------CCA1(2)
 
atgatatttgaatttctaaatagtaactcaaacactttttctatatttaatttagtatttagaagaaaagaaaaaaaacaaatttctatcttatacattc  24826500
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AGI:  At1g66530.1   
Description:  arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative. similar to EMB1027 (EMBRYO DEFECTIVE 1027), ATP binding / arginine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT4G26300.1); similar to hypothetical protein OsI_017894 [Oryza sativa (indica cultivar-group)] (GB:EAY96661.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08191.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65434.1); contains InterPro domain Arginyl tRNA synthetase, class Ic, N-terminal; (InterPro:IPR005148); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); c
Range:  from: 24822574    to: 24826005    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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