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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--
--------->
At4g35610
----------->
RAV1(2)
--------->
YAB1
--------->
ANAC58
--
<---------
ATHB12
--------->
ANAC46
<-
<<<<<<<<<
ARR2
<-----------
GT1
<---------
At4g35610
--------->
WOX13(1)
----------->
GT1
--------->
ANAC58
<-
---------->
DOF2
--------->
MYB46(3)
<---------
ALFIN1
--
--------->
TOE2(3)
--------->
YAB1
--------->
AtMYB61
<--
------------------------>
ANAC81
<---------
ATHB12
--------->
ANAC46
<-----
----->
AtLEC2
--------->
REM1(1)
--------->
WOX13(1)
<-----------
GT1
--------
tgcttagagatggaacaaaactacatcaaaagagacaatcaaacgattcaatcaacaacgaagtaacaattcaccacacgaatcacctgaatcagagatc
24779200
--------->
At4g35610
<---------
ARR14(1)
<---------
At4g35610
----->
TEIL
<---------
ANAC58
------->
TEIL
------->
GLK1(2)
<---------
ANAC58
<---------
ARR14(2)
--------
--------
ARR11(1)
---------->
DOF2
<---------
ARR11(3)
---------
--------
ARR14(2)
<---------
ARR14(2)
<---------
AHL20(1)
--------->
ANAC58
------->
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
DEAR3(1)
-------
ARR14(1)
------>
MYB46(1)
--------->
YAB1
--------->
ARR14(2)
--------->
ANAC58
-
ZmHOX2a(2)
------>
MYB83
--------->
GLK1(2)
--------->
GLK1(2)
--------->
ANAC46
->
GLK1(1)
<---------
MYB59
---------->
DOF2
--------->
AHL20(1)
------>
ZmHOX2a(2)
gaatctagcaaaaccagagattagaccaaatccaaagcgtatcaaagaatcagactcaaatattttctgaatctgaagctgatcgcagacgaaatcggaa
24779300
<---------
TOE2(3)
<---------
YAB1
<---------
TOE1(3)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
AGP1
<---------
ARR11(3)
<---------
GLK1(1)
------->
GAMYB
--------->
GLK1(1)
------->
GAMYB
---------->
DOF2
--------->
MYB46(3)
<--
----------->
ARR10
--------->
MYB46(3)
-------->
P
<----------
DOF2
---
--->
GT1
<---------
MYB52(1)
<------
ZmHOX2a(2)
<-----------
GT1
------
-->
GT1
<-------
TEIL
<-----------
GT1
<---------
AHL20(2)
<---------
MYB52(2)
-----------
aaaatgagatccgttatggttttaacaacgatcaagagagatttaaaagaagaagatgagattgagactaac
catctccatctttgtcgaagaggctaaa
24779400
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
AGP1
------>
NtERF2
--------->
ARR11(3)
--------->
LBD16
<---------
ARR11(3)
--------->
ANAC46
------>
ZmHOX2a(1)
--------->
ANAC58
====================
HOX2a_HOX2a
--------->
ANAC58
=====================
HOX2a_HOX2a
------>
ZmHOX2a(2)
--------->
TOE1(3)
--------->
At4g35610
<---------
ANAC58
--------->
TOE2(3)
<---------
MYB52(1)
<---------
ANAC58
-------
HSFC1(2)
<---------
ARR14(2)
--------->
ARR14(2)
---------->
ID1
------>
HSFC1(2)
--------->
ARR14(2)
<---------
ARR14(2)
<----------
DOF2
---->
DOF2
--------->
GLK1(1)
<---------
ZAT2
<---------
CCA1(2)
<-----
>
GT1
<---------
GLK1(1)
<---------
At4g35610
<<<<<<<<<
TBF1
<-----------
GT1
--------->
ICU4
agcttccttaaactcagagatctgttcatcagttagctgatccgccat
agcttcttcttctcgtttctttggtttttcgtttcagagaagaaatgatttt
24779500
--------->
ARR11(3)
<-----------
ARR10
<---------
ARR11(3)
--------->
AHL20(1)
----
--------->
RVE1(1)
----------->
GT1
----
--------->
At4g35610
----------->
RAV1(1)
--------->
DAG2
----
<---------
ZAT2
--------->
At1g77200
---------->
DOF2
----
--------->
ZAT2
--------->
DREB2C(2)
<---------
TOE2(3)
<---
--------->
GLK1(2)
------->
GAMYB
--------->
YAB1
<---------
AHL20(2)
--------->
LBD16
--------->
DEAR3(2)
*
TSS
<----------
ID1
--------->
AHL20(2)
--------->
LBD16
----------->
GT1
--------->
MYB46(3)
--------->
ANAC58
--------->
ANAC58
<---
------>
ZmHOX2a(1)
--------->
CCA1(1)
--------->
ANAC58
--------->
ANAC58
----
<---------
LBD16
<---------
At4g35610
--------->
SPL7
--------->
ANAC46
----------->
GT1
<----
----
AHL20(2)
--------->
ANAC46
--------->
TOE2(3)
--------->
YAB1
<------
ZmHOX2a(1)
<---------
AHL20(2)
tttttttcctgaagtctccgaagctgtgaaaatatcttagcgaccgacaaaaacaattatacg
acaatgaggaaaaagttaaaacgaaattaaatgttta
24779600
<--------
ATHB1
--------->
ATHB51
<---------
AHL20(2)
--------->
AHL20(2)
--------->
YAB1
--------->
ICU4
<---------
YAB1
<---------
ICU4
--------->
YAB1
--------->
ICU4
<---------
YAB1
--------->
YAB1
<---------
ARR11(3)
--------->
ARR11(3)
----->
ANAC46
<---------
ICU4
----->
ANAC58
<---------
YAB1
<---------
YAB1
----->
ANAC58
--------->
ICU4
<------
MYB83
<---------
ICU4
---------
----->
HSFB2a(2)
<---------
ANAC46
--------->
ANAC55(2)
<---------
ARR14(2)
------
ANAC55(2)
<------
MYB46(1)
<---------
ANAC55(2)
--------->
ZAT18
------
HSFB2a(2)
<-----------
GT1
<---------
ATHB12
<---------
ZAT18
----->
ANAC55(2)
--------->
AHL20(2)
<---------
At4g35610
<------
ZmHOX2a(1)
--------->
ARR14(2)
-----
LBD16
<---------
ICU4
--------->
MYB59
--------->
YAB1
--------->
ALFIN1
---------->
DOF2
<-------
TEIL
cggaagataataataataatttactagttgggtttttagctaatcatgtgattagtggatgtgggacttgagaggaagcccaaagggcccttggatacac
24779700
--------->
ATHB12
<---------
ICU4
----
--------->
ICU4
<--------
ATHB1
<---------
ATHB12
--------->
YAB1
<-----------
GT1
<---------
YAB1
--------->
ARR14(2)
<---------
AHL20(2)
--------->
DAG2
----------->
GT1
<---------
ATHB12
<---------
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
<---------
ATHB51
<---------
TOE1(3)
--------->
AHL20(2)
---------->
DOF2
<---------
WOX13(1)
------>
ZmHOX2a(1)
<---------
TOE2(3)
--------->
YAB1
--------->
ANAC55(2)
<-----------
GT1
<---------
YAB1
--------->
TOE2(3)
>
CCA1(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
ARR14(2)
attaaggcttaaaaatgttttaataaaacaatttacatatttaaaaagtaatgatttttcaattttgaatgataaataagacaatcctcaataatacaat
24779800
<-----------
GT1
<---------
ICU4
<---------
YAB1
--------->
YAB1
<---------
ICU4
<------
ZmHOX2a(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
--------->
AHL20(2)
<---------
AHL20(1)
----------->
GT1
<---------
YAB1
--------->
ARR11(3)
---------->
DOF2
<------
<---------
ICU4
<---------
YAB1
<---------
AHL20(2)
--------->
ANAC58
--------->
At4g35610
>>>>>>>>>>>>>>>>>
LFY
<---------
ARR11(3)
--------->
LBD16
<---------
AHL20(2)
----->
YAB1
<---------
At4g35610
<-----------
GT1
<---------
At4g35610
--------->
LBD16
<---------
agtacttaagttttaagctgtaagttttccaaaattaccattgttttattattcagatcatcattttatttgacatccctgaaaagcaaatatttacttt
24779900
<---------
MYB59
<---------
ARR11(3)
--------->
ARR11(3)
------
---------->
DOF2
------
----------->
GT1
---------
<---------
ANAC46
---------->
DOF2
------>
MYB83
--------->
ANAC55(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
---------->
DOF2
---------
<---------
AHL20(2)
--------->
TOE2(3)
------>
MYB46(1)
<---------
ANAC58
<---------
AHL20(1)
==============================================================
----
DOF2
--------->
AHL20(1)
--------------->
AGL15
<---------
YAB1
<---------
ANAC58
--
--
GT1
--------->
AHL20(2)
----------------->
AG
--------->
TOE2(3)
<---------
ANAC55(2)
tgagtttaaaataaaattgtgtttacttaaaaacagttttatcctaaagagtaaagacctaatcttatagtaaaagttgacattacttactgtataataa
24780000
--------->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
----------->
GT1
--------->
GLK1(2)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
--------->
ARR11(3)
<--------
--->
AHL20(2)
<----------
ID1
<---------
AHL20(2)
<--------
--->
YAB1
--------->
CCA1(2)
--------->
AHL20(2)
<---------
LBD16
>
YAB1
---------->
DOF2
--------->
MYB52(1)
<---------
YAB1
<---------
AHL20(2)
-->
GT1
<---------------
AGL15
<---------
At4g35610
--------->
ICU4
====================================
MADS_MADS
--------->
At4g35610
<---------
YAB1
-----
-------->
DOF2
--------------->
AGL15
<-----------
RAV1(2)
<---------
MYB52(1)
-------
aaaaaggattgaactagtagtttctaaagataggaacaaaacaactgttcaattttcttcagatgaagattaaaatctgttattattttaaatctcgggg
24780100
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AGI:
At1g66410.1
Description:
CAM4 (CALMODULIN 4); calcium ion binding. Identical to Calmodulin-1/4 (CAM4) [Arabidopsis Thaliana] (GB:P25854;GB:Q03510;GB:Q9FJ05); similar to CAM1 (CALMODULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G37780.1); similar to Os05g0491100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055907.1); similar to Calmodulin (CaM) (GB:P17928); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)
Range:
from: 24777880
to: 24779563
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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