Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->AHL20(2)                                                              --------->YAB1                                                             <---------YAB1                                                             --------->ICU4                                                           <--------ATHB1                                                           --------->YAB1                                                           <--------HAHB4                                                           <---------ICU4             ------>MYB83    --------->ANAC55(1)           --------->ATHB51             ------>MYB46(1) --------->ANAC58             <---------ATHB51            ----------->RAV1(1)                           --------->ICU4           --------->MYB46(3)--------->ANAC46             <---------ATHB12         --------->ANAC46  <---------ALFIN1          --------->ANAC58        --------->AtMYB61 ------->GAMYB              --------->ANAC46       --------->MYB46(3)<---------ALFIN1            --------->ANAC58                             ---      -------->P    --------->YAB1 --------->YAB1   --------->WOX13(1)                           ----   <---------At4g35610--------->bZIP60(1)         <------ZmHOX2a(2)                             <----   --------->At4g35610<---------bZIP60(1)        --------->ARR11(3)                            <----- ------YAB1--------->AtMYB61 --------->ANAC58 <------ZmHOX2a(1)   <---------AHL20(2)          <------ZmHOX2a(1) ------GT1--------->MYB46(3) --------->bZIP60(2)--------->GLK1(1)--------->AHL20(2)      <---------ATHB12   caattagctaccaccaacacaatgacaacacacgccatcaaaatcgaaggagatcaagcaataattataaaattcaagctcaaatacacaaatcaaggac  24701700                                    --------->MYB52(1)                                  <---------YAB1                               <---------YAB1                              ------>ZmHOX2a(2)                             --------->CCA1(2)       <---------ARR14(2)    <------ZmHOX2a(2)       --------->ARR14(2)   <---------AGP1      <---------CCA1(2)     --------->ARR14(2)    --------->YAB1          --------->AGP1 ------>At5g28300           <---------ARR14(2)            <---------GLK1(2)                      <--- ------->GT1                --------->ARR11(3)     --------->MYB46(3)--------->TOE1(2)          ----- -----DEAR3(1)              <---------ARR11(3)    ------->TEIL ------>ZmHOX2a(1)    --------->YAB1 ----ORA47(1)           ---------->DOF2     --------->TOE1(2) --------->TOE2(3)    <---------YAB1----   ggtgaatcatatccactgctcgaattcaaagatctgattatcggaacatatgaaccaatagattcctaaaacctagaaaacaattctcataagcgatatc  24701800                                                                                  --------->ANAC55(2)                                                                                  --------->YAB1                                                                                  <---------ANAC55(2)                                                                                 <-------TEIL                                                                               <---------GLK1(2)                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                         <---------AGP1                                                                         --------->AGP1                                                                         --------->ARR11(3)      --------->ANAC58              --------->ANAC55(1)                  <---------ARR11(3)      --------->ANAC58         <---------GLK1(2)                         <---------ARR14(2)   -------      --------->ANAC46         <---------ARR14(2)              ---------->DOF2 <---------ARR14(2) ------HSFB2a(2)               --------->ARR14(2)            <------ZmHOX2a(2) --------->ARR14(2) ------>GT1                 --------->ANAC46  <---------At4g35610        --------->ARR14(2)  -------- ----->HSFB2a(2)           <---------LBD16    --------->At4g35610       <---------CCA1(2)   ---------   gagaaaacacgaatcactgcaaaattttagacggaaactcgtaatcgcatctcagaaacatagatcaaagccctagatctagattcgtaatcgaaaaagt  24701900                                                                                              ------>ZmHOX2a(2)                                                                                             <------ZmHOX2a(2)                                                                                            <--------                                                                                            ---------                                                                                           --------->GLK1(1)                                                                  ---------->DOF2          <---------GLK1(1)                                                              ==============================HOX2a_HOX2a                                                              ====================HOX2a_HOX2a========                                                              <------ZmHOX2a(1)      ================                                                         <---------GLK1(2)           <------ZmHOX2a(2)                                                      --------------->AGL15         <---------ARR14(2)                                                      <---------------AGL15         --------->ARR14(2)                             --------->At4g35610     <-----------------AGL1         --------->ARR11(3)      --------->YAB1    <---------ARR14(2)           ----------------->AGL3         <---------ARR11(3)   --------->WOX13(1)--------->ANAC58                <-----------------AGL2 ------>ZmHOX2a(2)-------- <---------ATHB12    --------->ANAC46                ----------------->AGL1<------ZmHOX2a(2)--------- ---->GT1            --------->ANAC58                <-----------------AG <---------ARR14(2)<-------- ->DAG2            --------->ANAC46      --------->GLK1(2)    =====================HOX2a_HOX2a======= ->DOF2      --------->TOE2(3)    ------->TEIL    --------->DOF5.7(2)     --------->ARR14(2)---------   gaaatcaatcggaaacattatacgcgaaaccagatgaatcgagaatcgaaacgttaccagattaggagaaaagacagatcggagaagatcgagagatctg  24702000  <---------TOE2(3)  <---------TOE1(3)      <---------ARR14(2) -ARR11(3)           <---------LBD16 >ARR14(2)       <----------DOF2 ==================HOX2a_HOX2a ==================HOX2a_HOX2a               <---------ARR14(2) ->CCA1(2)     <---------HSFC1(2)            --------->ARR14(2) >AGP1         --------->HSFC1(2)           <------ZmHOX2a(1)                     <---------TOE2(3) -ARR14(2)  <------ZmHOX2a(1)             <---------TOE2(3)    ----------->GT1 <---------WOX13(1) ==================HOX2a_HOX2a    <-----------GT1            --------->ALFIN1--------->ATHB12 >ARR11(3)<---------TOE2(3) <---------AHL20(2)              --------->ALFIN1<---------YAB1       *TSS   tgttagggttttgaggaagcttttggggattttttttttctcttgaggatttgatgaacgaagggggggaaatagtttgtgattgagattactggttaat  24702100                                                 --------->ANAC55(2)                 <-----------ARR10                                                 <---------ANAC55(2)                <---------CCA1(2)                                          --------->At5g28300                     <---------ANAC58                                     <---------ZAT2    <---------DAG2      <---------ANAC46                                     <---------At4g35610                   <---------ANAC58                    --------->AHL20(2)   ----------->GT1                   <---------ANAC58                  <-----------TBP    --------->ZAT2 <-----------GT1     <---------DEAR3(1)              <----------DOF2        --------->At4g35610   <-----------GT1<------NtERF2       -------           --------->ARR11(3)       ----------------------->TaNAC69(2) --------->ALFIN1     ---------           <---------ARR11(3)    <-----------HVH21  ------->TEIL<----------DOF2   <---------ANAC58        ----------->GT1    <------ZmHOX2a(1)  --------->ICU4--------->HSFB2a(2)   <---------ANAC46   <------ZmHOX2a(1)<-----------TBP<-----------RAV1(2) <----------DOF2--------->ALFIN1     <---------YAB1   ggagaggagaaggtatctttttttatataggactaggtcagcagggtaattatgtaacttttctcgatttagggggggcgttttgcgtctcttatcaaaa  24702200                                            <---------ARR14(2)                                            --------->ARR14(2)                                           <XXXXXXXXXXXXXXXXXXXXMIR420                                         <---------ANAC58                                         <---------ANAC58                                 --------->HSFB2a(2)                                   --------->ZAT2                                         <---------HSFB2a(2)                                   <---------At4g35610                                 <----------DOF2                                   --------->At4g35610                                 <---------DAG2                                   <---------ZAT2                                   <-----------GT1                             <---------WOX13(1)   <----------DOF2             --------->ICU4                           <---------HSFB2a(1)  --------->LBD16              <---------TOE2(3)   ----                    --------->SPL7------>NtERF2 <<<<<<<<<<AtSR1              <---------TOE1(3)   ---- --->DOF2          <---------MYB52(1)--------->CCA1(2)----------->GT1      --------->CCA1(2)    <---- >YAB1      ---------->DOF2--------->HSFB2a(1)<---------LBD16   ----------->GT1<------ZmHOX2a(1)-----   gtagacaattaccaaaaaaccgtaagggaagattgccagctatgcgtttccgcgtttagttaaaaatagtttataagataaggattatacttttcgaaga  24702300           <-----------RAV1(2)                                                                 ------           <---------ALFIN1                                                                   <------         ----------->RAV1(1)                                  <---------YAB1            --------->WOX13(1)    ---------->DOF2                                           <---------AHL20(2) --------->GLK1(2) ----->GLK1(1)                                  <---------AHL20(2)              <---------GLK1(2) ----->CCA1(2)                                 <---------AHL20(2)      <---------ARR14(2)     <------ -----ARR11(3)            <---------WOX13(1)   --------->AHL20(2)      --------->ARR14(2)   --------- ---->ARR11(3)         <---------YAB1          <---------AHL20(1)   <---------ANAC46--------->WOX13(1)   tatcaaaaatgccccagttgtttttctaattgatatgttgatactacaattttttttttttttttttattgtgtatatgtaagaatctatcaatctatca  24702400        --------->HSFB2a(1)       <-----------------AGL1      --------->ARR14(2)      <---------ARR14(2)   --------->ANAC58   --------->ANAC58   --------->ANAC55(2)   --------->ANAC46                                                 <---------YAB1  <---------LBD16                <---------ARR14(2)                 <---------TOE2(3)     <---------HSFC1(2) ------>ZmHOX2a(1)     ------>ZmHOX2a(1)                  ------->MYC3                    <---------HSFB2a(1) --->YAB1<---------DAG2--------->LBD16                    <-------MYC3            <---------MYB46(3) ---YAB1<---------HSFB2a(1)      --------->ARR14(2)       <-------MYC2           --------->ALFIN1   < ---ATHB12           ----------->RAV1(2)      --------->TOE2(3)     <---------TOE1(3)     --------->HSFB2a(1) >WOX13(1)<----------DOF2        --------->ARR11(3)       ------->MYC2--------->ARR11(3)  --------->HSFC1(2)   ttcctacggaacctttttggtactcctgaaaaacaaatcttgatcaaacctatatttgcatatgcagtttaagattatgtccagtggtgagaaccttcta  24702500                                                                    --------->HSFB2a(1)                                                                    <------MYB46(1)                                                                    <---------HSFB2a(1)                                                                    --------->HSFC1(2)                                                                    <---------HSFC1(2)                                                                    <------MYB83                                                                   --------->MYB59                                                       <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <---------AHL20(2)    --------->MYB46(2)                                        --------->AHL20(2)         <---------TOE1(2)                         <---------AHL20(2) <---------AHL20(2)     --------->MYB111(1)            <---------AHL20(2)        <---------ARR11(3)     <---------AtLEC2              ----------           <------------------------ANAC81  --------->AHL20(2)    <--------P           <----------DOF2 ---------GLK1(2)   <---------AHL20(2)--------->ARR11(3) <----------DOF2 <---------HSFB2a(2)   ------   tagactctcactatttttttgttttatttttttttggaaagatttattaattttgttatctttccatggtaggttctccaagtagggttctttaaaagaa  24702600  Previous    Next  AGI:  At1g66260.1    Description:  RNA and export factor-binding protein, putative. similar to RNA and export factor-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G37720.1); similar to ALY protein [Nicotiana benthamiana] (GB:CAJ44458.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 24699303    to: 24702097    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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