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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
==============
------>
ZmHOX2a(2)
--------->
GLK1(1)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AGP1
<---------
ARR14(2)
--------->
At4g35610
----------->
RAV1(2)
<---------
ICU4
--------->
ZAT2
--------->
YAB1
<---------
ZAT2
<---------
TOE2(3)
--------->
ICU4
<---------
ICU4
<---------
GLK1(1)
--------->
ANAC58
<---------
YAB1
--------->
YAB1
<---------
CCA1(2)
--------->
ANAC58
<-----------
TGA1
<---------
ICU4
<---------
At4g35610
----------->
GT1
<---------
At5g28300
<---------
YAB1
<-----------
RAV1(2)
tttctcactgggagaagtcaaaatcaaggaaaaaacttatac
cgtcatcatcatcttcttcatcatcgttttcatcatgctcagctggatctccatgaac
24317800
------>
ZmHOX2a(1)
============================
HOX2a_HOX2a
------>
ZmHOX2a(2)
--------->
ARR14(2)
====================
HOX2a_HOX2a
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
TOE2(3)
--------->
ANAC46
<-
<-----------
TGA1
--------->
ARR11(3)
<------
ZmHOX2a(1)
--------->
At4g35610
<-
<---------
ETT(2)
<---------
ARR11(3)
---------->
DOF2
--------->
YAB1
<--
<---------
GLK1(1)
<---------
YAB1
---------->
DOF2
--------->
AtLEC2
<----
======================
HOX2a_HOX2a
--------->
ANAC58
--------->
AHL20(2)
--------->
TOE2(3)
tggctctccgtcgtcatcctcaagctcatgatcct
ctacgcaaaagagaaaaggattcaattttttcatacaaatcagaagaaataaacaaaaccctagt
24317900
<---------
ANAC58
<---------
ANAC58
<-----------
HVH21
<---------
RAP2.6(2)
<-----------
TGA1
<---------
LBD16
<---------------------
WRI1
<---------
At5g28300
<---------
TOE1(3)
--------->
TOE2(3)
--------->
ICU4
<-----------
GT1
<---------
TOE2(3)
--------------->
AtSPL8
--------->
ANAC58
<---------
YAB1
--------->
AHL20(1)
<---------------
AtSPL8
--------->
ANAC58
-------
HAHB4
<---------
AHL20(2)
--------------->
AtSPL3
--------->
ANAC46
--------
ICU4
--------->
AHL20(2)
<---------------
AtSPL3
------>
ZmHOX2a(1)
-------
YAB1
--------->
AHL20(2)
<---------
TOE1(3)
<---------
ANAC58
-----
ZAT6
----------->
GT1
<----------
ID1
<---------
TOE2(3)
<---------
ANAC58
--------
attattacggcgtttcacacagaaaaaaattagggtttgcgacgaagcgattaaggtac
cttcatcgtcagagattgcgttcctcgccat
gtttatctca
24318000
<---------
GLK1(1)
--------->
ATHB12
<---------
DOF5.7(2)
--------->
YAB1
---------->
DOF2
<---------
ICU4
--------->
DOF5.7(2)
<---------
YAB1
<---------------
AtSPL3
--------->
ICU4
--------------->
AtSPL3
<---------
YAB1
<---------------
AtSPL8
----------->
GT1
----------->
GT1
<---------
YAB1
---------
->
TOE2(3)
<---------
YAB1
--------->
AtLEC2
--------->
MYB52(1)
<---------
YAB1
---------->
DOF2
acaaattagaagtacgataacgcagaaattagccctgcaaa
ctgcaaaaaaaaacgaagagattgtgattatgatttctgattttgcgaagagaaagggg
24318100
<---------
TOE2(3)
---------->
DOF2
<---------
HSFB2a(1)
<------
MYB83
--------->
HSFB2a(1)
<------
MYB46(1)
--------->
HSFC1(2)
---------->
DOF2
<------
ZmHOX2a(1)
--------->
MYB46(2)
<---------
HSFC1(2)
--------->
HSFB2a(2)
--------->
MYB59
<------
>
DAG2
<---------
HSFB2a(2)
--------->
CCA1(2)
<----------
DOF2
gaagaaggttctcgcgattactagggttcttcgaaaagagaacccagaaggagctagagaagagaaatgggtttggtaaaggaagaagctttac
cagtgt
24318200
<---
<---------
ARR14(2)
------------
<------
NtERF2
--------->
TOE2(3)
<---------
DEAR3(1)
--------->
GLK1(1)
<----------
ID1
--------->
ARR14(2)
--------->
DAG2
<---------
ARR14(2)
--------->
YAB1
------>
NtERF2
*
TSS
>>>>>>>>>
TBF1
----------->
HVH21
-------
---
ZAT6
---------->
DOF2
----------->
GT1
<-----------
GT1
<---------
GLK1(2)
gaatttttcataagcgaaaggcgacgaagaactgat
aaacgaagaagaagacggagacgatgaaattacaagtttatactgacagatttgcctcaatttt
24318300
<----------
DOF2
<---------------
AGL15
--------------->
AGL15
<---------
DAG2
<---------
TOE2(3)
<-----------
GT1
--------->
YAB1
--------->
YAB1
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
-------->
ATHB1
<---------
AHL20(2)
<---------
ICU4
<---------
AHL20(2)
--------->
YAB1
--------->
ARR11(3)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
DAG2
--------->
HSFB2a(2)
<---------
ICU4
--------->
ICU4
---------->
DOF2
--------
GT1
<---------
ARR11(3)
<---------
YAB1
----------->
GT1
>
CBF
<---------
HSFB2a(2)
--------->
YAB1
--------->
AHL20(1)
---------->
DOF2
-->
AHL20(2)
--------->
AHL20(1)
<---------
ICU4
----------->
GT1
-
ttctctgcgttttagaaatattttttttttaataatgtttttaaaaattattatactttttgaagaaatgtaaagaaaaaaaagtcgagactaaaaacaa
24318400
---------
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
<---------
YAB1
--------->
YAB1
<--------
ATHB1
-------->
HAHB4
<---------
ICU4
<--------
HAHB4
--------->
ATHB51
<---------
ATHB51
--------->
AHL20(2)
--------->
ICU4
----------->
GT1
--------->
AHL20(2)
--------->
ALFIN1
--------->
YAB1
<---------
ICU4
<---------
AHL20(2)
--------->
TOE2(3)
--------->
YAB1
--------->
AHL20(2)
<-------
TEIL
---------
--------->
DOF2
<---------
YAB1
--------->
GLK1(2)
--------->
AHL20(2)
<---------
YAB1
--
aacaaagtttattcaacttatcttataattagagtggagaatatttaattcgataattcgaaatataagaaaatagacatacattaataattaataaaaa
24318500
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<--------
HAHB4
<---------
AHL20(2)
--------->
ATHB51
<---------
YAB1
--------->
TOE2(3)
<---------
AHL20(2)
--------->
AHL20(1)
-------->
ATHB1
--------->
YAB1
<---------
AHL20(2)
<---------
ATHB51
----------->
GT1
--------->
AHL20(2)
<---------
AHL20(2)
>
YAB1
--------->
At4g35610
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
>
AHL20(2)
--------->
ICU4
<---------
YAB1
<---------
AHL20(2)
--------->
ARR14(2)
--------->
GT1
----------->
GT1
<---------
AHL20(2)
<---------
AHL20(1)
<---------
ARR14(2)
aacgttacatcggctaaaatgtttaaacaattatttaaatttatatgataaataaaattaaaataaatctaaatcggattcaaatttaaaagtttgtcta
24318600
<---------
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
WOX13(1)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ARR11(3)
<-
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ARR11(3)
---------
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
DAG2
--------->
ATHB51
---
--------->
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
---------->
DOF2
<---------
YAB1
<--
<---------
AHL20(2)
<-----------
GT1
--------->
YAB1
----------->
GT1
<---------
CCA1(2)
<--------
tagattaatttaatttttagttaaacaatttaattttatcaaaaatataaaattttaaactgtgaaaaagttttaaatcttataattgatatatttaaaa
24318700
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AGI:
At1g65440.1
Description:
GTB1 (GLOBAL TRANSCRIPTION FACTOR GROUP B1); RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator. similar to RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator [Arabidopsis thaliana] (TAIR:AT1G63210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18264.1); similar to SH2 motif; Alcohol dehydrogenase, zinc-containing; Resolvase, RNase H-like fold; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABD32884.1); similar to hypothetical protein OsJ_018278 [Oryza sativa (japonica cultivar-group)] (GB:EAZ34795.1); contains InterPro domai
Range:
from: 24310330
to: 24318236
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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