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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                      ==============
                                                                                      ------>ZmHOX2a(2)
                                                                                     --------->GLK1(1)
                                                                                    --------->ARR14(2)
                                                                                    <---------ARR11(3)
                                                                                    --------->ARR11(3)
                                                                                    <---------AGP1
                                                                                    <---------ARR14(2)
                                                                               --------->At4g35610
                                                                               ----------->RAV1(2)
                                            <---------ICU4                     --------->ZAT2
                                            --------->YAB1                     <---------ZAT2
                      <---------TOE2(3)    --------->ICU4              <---------ICU4<---------GLK1(1)
                      --------->ANAC58     <---------YAB1           --------->YAB1 <---------CCA1(2)
                      --------->ANAC58 <-----------TGA1    <---------ICU4      <---------At4g35610
           ----------->GT1          <---------At5g28300   <---------YAB1     <-----------RAV1(2)
 
tttctcactgggagaagtcaaaatcaaggaaaaaacttataccgtcatcatcatcttcttcatcatcgttttcatcatgctcagctggatctccatgaac  24317800
                              ------>ZmHOX2a(1)
                            ============================HOX2a_HOX2a
                            ------>ZmHOX2a(2)
                          --------->ARR14(2)
               ====================HOX2a_HOX2a
               ------>ZmHOX2a(1)  --------->ANAC58
              --------->TOE2(3)   --------->ANAC46                                                <-
        <-----------TGA1  --------->ARR11(3)     <------ZmHOX2a(1)       --------->At4g35610      <-
       <---------ETT(2)   <---------ARR11(3) ---------->DOF2           --------->YAB1            <--
<---------GLK1(1)       <---------YAB1---------->DOF2           --------->AtLEC2               <----
======================HOX2a_HOX2a --------->ANAC58       --------->AHL20(2)               --------->TOE2(3)
 
tggctctccgtcgtcatcctcaagctcatgatcctctacgcaaaagagaaaaggattcaattttttcatacaaatcagaagaaataaacaaaaccctagt  24317900
      <---------ANAC58
      <---------ANAC58                                        <-----------HVH21
   <---------RAP2.6(2)                                        <-----------TGA1
  <---------LBD16                    <---------------------WRI1
  <---------At5g28300       <---------TOE1(3)          --------->TOE2(3)             --------->ICU4
 <-----------GT1            <---------TOE2(3)    --------------->AtSPL8         --------->ANAC58
<---------YAB1        --------->AHL20(1)         <---------------AtSPL8         --------->ANAC58
-------HAHB4          <---------AHL20(2)         --------------->AtSPL3         --------->ANAC46
--------ICU4          --------->AHL20(2)         <---------------AtSPL3        ------>ZmHOX2a(1)
-------YAB1          --------->AHL20(2)          <---------TOE1(3)       <---------ANAC58
-----ZAT6       ----------->GT1    <----------ID1<---------TOE2(3)       <---------ANAC58   --------
 
attattacggcgtttcacacagaaaaaaattagggtttgcgacgaagcgattaaggtaccttcatcgtcagagattgcgttcctcgccatgtttatctca  24318000
                                                                      <---------GLK1(1)
                                                                    --------->ATHB12
              <---------DOF5.7(2)                                --------->YAB1
              ---------->DOF2                                    <---------ICU4
            --------->DOF5.7(2)                                 <---------YAB1
     <---------------AtSPL3                                     --------->ICU4
     --------------->AtSPL3                                  <---------YAB1
     <---------------AtSPL8           ----------->GT1      ----------->GT1<---------YAB1   ---------
->TOE2(3) <---------YAB1       --------->AtLEC2 --------->MYB52(1) <---------YAB1        ---------->DOF2
 
acaaattagaagtacgataacgcagaaattagccctgcaaactgcaaaaaaaaacgaagagattgtgattatgatttctgattttgcgaagagaaagggg  24318100
                                                                           <---------TOE2(3)
                                                                         ---------->DOF2
  <---------HSFB2a(1)                                                 <------MYB83
  --------->HSFB2a(1)                                                 <------MYB46(1)
  --------->HSFC1(2)          ---------->DOF2 <------ZmHOX2a(1)      --------->MYB46(2)
  <---------HSFC1(2)        --------->HSFB2a(2)                      --------->MYB59         <------
>DAG2                       <---------HSFB2a(2)              --------->CCA1(2)       <----------DOF2
 
gaagaaggttctcgcgattactagggttcttcgaaaagagaacccagaaggagctagagaagagaaatgggtttggtaaaggaagaagctttaccagtgt  24318200
                                                                                                <---
                         <---------ARR14(2)                                             ------------
                   <------NtERF2                                                       --------->TOE2(3)
                 <---------DEAR3(1)                                               --------->GLK1(1)
                 <----------ID1                                                  --------->ARR14(2)
              --------->DAG2                                                     <---------ARR14(2)
    --------->YAB1------>NtERF2    *TSS >>>>>>>>>TBF1                      ----------->HVH21 -------
---ZAT6     ---------->DOF2 ----------->GT1                   <-----------GT1    <---------GLK1(2)
 
gaatttttcataagcgaaaggcgacgaagaactgataaacgaagaagaagacggagacgatgaaattacaagtttatactgacagatttgcctcaatttt  24318300
                                                    <----------DOF2
                                                    <---------------AGL15
                                                    --------------->AGL15
                                                    <---------DAG2
                              <---------TOE2(3)  <-----------GT1
                          --------->YAB1       --------->YAB1
                         <---------AHL20(2)   <---------YAB1
                        --------->AHL20(2)  -------->ATHB1
                        <---------AHL20(2)  <---------ICU4
                  <---------AHL20(2)        --------->YAB1
               --------->ARR11(3)          --------->AHL20(2)
               <---------AHL20(1)          <---------AHL20(2)                --------->DAG2
        --------->HSFB2a(2)  <---------ICU4--------->ICU4                   ---------->DOF2
--------GT1    <---------ARR11(3)          <---------YAB1            ----------->GT1
>CBF    <---------HSFB2a(2)  --------->YAB1--------->AHL20(1)      ---------->DOF2
-->AHL20(2)    --------->AHL20(1)        <---------ICU4         ----------->GT1                    -
 
ttctctgcgttttagaaatattttttttttaataatgtttttaaaaattattatactttttgaagaaatgtaaagaaaaaaaagtcgagactaaaaacaa  24318400
                                                                                           ---------
                                                                                       --------->AHL20(2)
                                                                                       <---------AHL20(2)
                                                                                      --------->ICU4
                                                                                      <---------YAB1
                                                                                    --------->YAB1
                                                                                    <--------ATHB1
                                                                                    -------->HAHB4
                                                                                    <---------ICU4
                                                                                    <--------HAHB4
                                                                                    --------->ATHB51
                                                                                   <---------ATHB51
                                         --------->AHL20(2)                        --------->ICU4
                               ----------->GT1                                     --------->AHL20(2)
                              --------->ALFIN1                                   --------->YAB1
                      <---------ICU4     <---------AHL20(2)                   --------->TOE2(3)
                      --------->YAB1    --------->AHL20(2)                  <-------TEIL   ---------
--------->DOF2       <---------YAB1 --------->GLK1(2)            --------->AHL20(2)<---------YAB1 --
 
aacaaagtttattcaacttatcttataattagagtggagaatatttaattcgataattcgaaatataagaaaatagacatacattaataattaataaaaa  24318500
                                                  --------->AHL20(2)
                                     <---------AHL20(2)
                                     --------->AHL20(2)--------->AHL20(2)
                                   --------->AHL20(2) --------->AHL20(2)
                               --------->AHL20(2) <---------AHL20(2)
                           <--------HAHB4        <---------AHL20(2)
                           --------->ATHB51 <---------YAB1      --------->TOE2(3)
                           <---------AHL20(2)    --------->AHL20(1)
                           -------->ATHB1 --------->YAB1    <---------AHL20(2)
                          <---------ATHB51----------->GT1  --------->AHL20(2)     <---------AHL20(2)
>YAB1   --------->At4g35610--------->AHL20(2)    --------->AHL20(2)              --------->AHL20(2)
>AHL20(2)                 --------->ICU4 <---------YAB1<---------AHL20(2)--------->ARR14(2)
--------->GT1  ----------->GT1 <---------AHL20(2)<---------AHL20(1)      <---------ARR14(2)
 
aacgttacatcggctaaaatgtttaaacaattatttaaatttatatgataaataaaattaaaataaatctaaatcggattcaaatttaaaagtttgtcta  24318600
                                                                                       <---------AHL20(2)
                                                                                      --------->AHL20(1)
                                       --------->AHL20(2)                             <---------AHL20(1)
      <---------AHL20(2)       <---------AHL20(2)                                     <---------ARR11(3)
      --------->AHL20(2)      --------->AHL20(2)                                      --------->ARR11(3)
     <---------AHL20(1)   --------->AHL20(2)                                     <---------WOX13(1)
     <---------AHL20(2)   <---------AHL20(2)                            --------->ARR11(3)        <-
     --------->AHL20(2)  <---------AHL20(2)                             <---------ARR11(3) ---------
  <---------AHL20(2)     --------->AHL20(2)  <---------AHL20(2)--------->DAG2  --------->ATHB51  ---
 --------->AHL20(2)      <---------AHL20(1) --------->AHL20(2)---------->DOF2 <---------YAB1     <--
 <---------AHL20(2)<-----------GT1 --------->YAB1       ----------->GT1<---------CCA1(2)   <--------
 
tagattaatttaatttttagttaaacaatttaattttatcaaaaatataaaattttaaactgtgaaaaagttttaaatcttataattgatatatttaaaa  24318700
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AGI:  At1g65440.1   
Description:  GTB1 (GLOBAL TRANSCRIPTION FACTOR GROUP B1); RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator. similar to RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator [Arabidopsis thaliana] (TAIR:AT1G63210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18264.1); similar to SH2 motif; Alcohol dehydrogenase, zinc-containing; Resolvase, RNase H-like fold; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABD32884.1); similar to hypothetical protein OsJ_018278 [Oryza sativa (japonica cultivar-group)] (GB:EAZ34795.1); contains InterPro domai
Range:  from: 24310330    to: 24318236    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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