Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->AHL20(2)                                                <---------STY1(2)                    --------->YAB1                                                     --------->STY1(2)                   --------->AHL20(2)                                                  <---------ZAT2               --------->AHL20(2)                                                 --------->ANAC58         --------->AHL20(2)                                                       --------->ANAC58    --------->AHL20(2)             <-----------GT1                    --------->AHL20(1)           <- ------------------->ANAC81 --------->TOE2(3)                    --------->AHL20(2)   --------->ANAC58 ->DOF2 --------->AHL20(2)<-------TEIL    <----------DOF2        <---------AHL20(2)   --------->ANAC58   ccaaaaaaaaataaaaaaaaaataaaaatacatcaaatttccatcttttaagtatatcaatatttgtttaaatatgttatccattcgcaagctagtttcc  24228100                     <---------DEAR3(2)                   <---------ORA47(1)            <---------YAB1          <---------AHL20(2)         <---------YAB1  <----------DOF2        <---------AHL20(2)      <---------YAB1 <------MYB46(1)                      <---------ALFIN1        --------->ANAC58   <---------AHL20(2)<------MYB83         ------>MYB83   <---------At4g35610      --------->ANAC58 --------ATHB12 <---------AtMYB61         ------>MYB46(1)<---------ZAT14     --------->ZAT14    <----   aatagtttatttttatttttggtcggtctttcacctatggaaccaaatgaacaatggtctgcacatccaatagcctctctacgctcgcagtcttcaagtt  24228200                                          --------->ARR11(3)                                          --------->GLK1(2)                    --------->AtMYB61     <---------ARR11(3)                 --------->ANAC46     <------ZmHOX2a(1)              <---------At4g35610       --------->ZAT14               ----------->GT1             <-----------RAV1(1)       <---------ZAT14             --------->CCA1(2)    <---------AHL20(2)    --------->YAB1  <---------ALFIN1----------->GT1    --------->AHL20(2)                          -- ---TEIL ----------->GT1  --------->HSFB2a(2)<----------DOF2 --------->ARR11(3)                   <--   catcaatagtgaagtaaaaacaccactgctagaatagataggaaaatctttttgaaattttatgaccttgttgctgcgatgaaaactggaatccttgttt  24228300                                                          <---------YAB1                       --------->ALFIN1              <---------ICU4               ------>ZmHOX2a(2)                     --------->YAB1                           <------              <------ZmHOX2a(2)                   ------>MYB46(1)                             <------MYB46(1)          --------->ANAC58                        ------>MYB83   --------->YAB1--------->ANAC58          --------->ANAC58    ----------->GT1   <---------MYB59<---------TOE2(3)    --------->MYB46(3) <----------DOF2     <-----------RAV1(1)--------->YAB1  --------->YAB1         --------->ANAC58   <-- -------->ID1<---------ARR14(2)       <------------CBF <---------YAB1       <----------DOF2   <------MYB83 ---------GT1--------->ARR14(2)      <---------ICU4 --------->ICU4     <-----------GT1      <--------   tttctttttgccaaggatccaaaatgttgggctcgttactaattgtaagacctaattatcatgttaatgatatataccctttcgcaacaacttggtcggt  24228400                                     <---------YAB1                                    --------->AHL20(2)                                    <---------AHL20(2)                                   --------->AHL20(2) <---------YAB1                      --------->TOE2(3)             --------->YAB1          ---------->DOF2 <---------AtLEC2    <---------YAB1--------->YAB1   <---------ICU4     ------->TEIL               <-- ---DEAR3(2)        <---------ARR11(3)             --------->ICU4<---------AHL20(2)               <-- --------DOF2       --------->ARR11(3)   ----------->GT1        <---------AHL20(2)           <------- -ORA47(1)  ------------>CBF  ------------>CBF ------------>CBF --------->AHL20(2)     ------>ZmHOX2a(1)   ctttcatggcatatttcaatattatcttagacaacaattaaaatagaaaaacaattatcagacaaattaaatgaatgtcaaagtaagtcctagttaagtt  24228500                                                                --------->AHL20(2)                                                                <---------AHL20(2)                                                          --------->ANAC58                                                   --------->ANAC55(2)                                                   --------->ANAC58    ------->TEIL                                   --------->ANAC46                                 <  <---------ZAT18                         <-----------GT1 <---------ANAC55(2)                       -  --------->ZAT18                       <---------MYB52(2)--------->ANAC58     <---------YAB1       - ---------RAV1(1)                <---------WOX13(1)--------->ANAC58      ------->TEIL<---------ALFIN1 -------AtMYB61               <---------YAB1    --------->ARR14(2)      <---------AtLEC2           <- --TOE2(3)  <---------YAB1  <----------DOF2  ------->GAMYB<---------ANAC46 <-----------HVH21---------   ttggtgcacctattcccattgagtcttagactttgattaacaaataaccacatacgcattacgcatataaatatgcatgtcatgactccacatccaaagg  24228600                                            <---------ARR14(3)                                            <---------AGP1                                            --------->AGP1                            <---------AHL20(2)                 <----------DOF2            --------->ARR14(3)              --------->GLK1(2)             --------->ARR11(3)            --------->MYB46(3)              <---------ARR11(3)          ----------->RAV1(1)   <-----------GT1     --------->ANAC58       --------->ANAC58     --------->AHL20(2)      --------->ANAC58       --------->ANAC46    --------->AHL20(2)     ---------->DOF2     ---------->DOF2       <---------AHL20(2) ------>ZmHOX2a(2) ---------ARR14(2)         <---------AHL20(1)<------ZmHOX2a(2) -------->ARR11(3)      --------->AHL20(2)  --------->ARR14(2) -------->ARR14(2)   --------->TOE2(3)  ---------->DOF2---------->DOF2                              < -----ZmHOX2a(1)<---------ICU4<---------YAB1<---------ARR14(2)               <---------ARR11(3)   <-- ->DOF2--------->ANAC58 <---------AHL20(2) --------->RVE1(1)           >>>>>>>>>TBF1        <--------   aggaacttgaagcaacaatcttttcttaaattattttcgatctaaagatcttgaaagcaaagttgatttcgaagaagaagataacttcgctaattatctg  24228700      <-------GAMYB    <---------ATHB12    --------->ANAC58           --------->GLK1(1)     <-----------RAV1(1)               <---------RAP2.6(3)            --------->At4g35610 ----------DOF2<<<<<<<<<TBF1     <---------HSFB2a(2)                 --------->ARR11(3) ----------------------ANAC81    --------->HSFB2a(2)                 <---------ARR11(3)         <---- ---GT1<---------MYB52(1) <---------ANAC46 --------->ANAC58    --------->ALFIN1      --------->MYB46(3)   ttcttttctgttgtttcttcttccaatcgcgttttctaggccgataagaaacttagatggaccaagtggaagagctccaactgttcaacaaataagaaac  24228800                                     <---------YAB1                                   --------->ATHB12                                  <---------YAB1                              ------->GAMYB                           --------->MYB52(1)                          <---------WRKY12                                                         --                          <---------WRKY38(1)                       --------->YAB1                 <- --------->TOE2(2)     --------->ZAT18         <---------GLK1(2)<------ZmHOX2a(1)                 <-- --------->TOE1(2)     <---------ZAT18   <---------ZAT6  --------->ZAT18                          <-- -----MYB52(2)  ----------->HVH21 --------->ICU4   --------->HSFB2a(2)<---------YAB1   ---------->DOF2   aaacatgggactagagaggtgatagtggacaacgggattattagtgtcagtttctcgagtccccaaggacttataactggcatcaaatacaaaggagtca  24228900                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                       --------->ANAC46            <---------ALFIN1                                                         --------->MYB52(1)          --------->AtLEC2 --------->HSFB2a(2)                               >>>>>>>>>RAP2.2 ------->YAB1              <---------HSFB2a(2)------>NtERF2               <---------CCA1(2) --------ICU4          --------->ZAT2      --------->LBD16            <----------DOF2<---------ALFIN1 -------ATHB51       ------->GAMYB       <---------LBD16         <-----------GT1   --------->AtMYB61 -------ATHB12--------->ANAC46 <---------ARR14(2) --------->AtLEC2------->TEIL  --------->ANAC46   ataatgttctccatccacatcaacgagctcgagaatactttgtaccggagccatacaagaacacaatgaaccctttatatctaaaccacacggacaagtt  24229000  Previous    Next  AGI:  At1g65210.1    Description:  similar to lyase [Arabidopsis thaliana] (TAIR:AT4G38030.1); similar to Os08g0554100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062464.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); similar to hypothetical protein OsI_029185 [Oryza sativa (indica cultivar-group)] (GB:EAZ07953.1); contains InterPro domain Galactose-binding like (InterPro:IPR008979); contains InterPro domain Rhamnogalacturonate lyase (InterPro:IPR010325) Range:  from: 24228475    to: 24229478    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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