Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <---------At4g35610                                                          --------->At4g35610                                              <------NtERF2                                             ------>NtERF2--------->HSFC1(2)                                            --------->ARR14(2)                                            <---------ARR14(2)                                          <---------ATERF1(1)                                          <---------RAP2.3(1)                                         <---------RAP2.3(3)                                         <---------RAP2.3(2)                                         <---------DEAR3(1)  --------->ANAC58                                        --------->RAP2.6(3)  --------->ANAC58                                  <-------GAMYB           <---------HSFC1(2)                                 --------->MYB55(2)      --------->ANAC58            --------->ZAT2                                 <---------MYB46(3)      --------->ANAC58            --------->At4g35610   --------->ARR11(3)           --------->ALFIN1  <------ZmHOX2a(2)                  <---------ZAT2   <---------ARR11(3)       <---------LBD16--------->ATERF1(1)   ----------->HVH21   <---------At4g35610 -------->DOF2--------->ALFIN1  <---------AtMYB61 <---------ATHB12    <------ZmHOX2a(1) -->GT1       ----------->GT1<---------DEAR3(1)   ===========================HOX2a_HOX2a   ataaagctcttgagaagtgtagaaagggtttgcggtggttgagacggctccgatcatggaagcacccatgaaggagaaaacgaactcggctgagttttgg  24174800               --------->TGA2(2)              <-----------HVH21              <-----------TGA1             --------->TGA1a             --------->ANAC46             <---------bZIP60(2)             --------->bZIP60(2)             <---------ANAC55(2)             --------->bZIP60(1)             <---------ANAC58             --------->O2             ==================bZIP_DOF             <---------O2             <---------TGA1a             <---------bZIP60(1)             --------->ANAC55(2)             <---------TGA2(1)             --------->TGA2(1)             <<<<<<<<<<HY5             <---------ANAC58                                         <---------ANAC58            ----------->STF1                                          <---------ANAC58            <-----------STF1                                          <---------ANAC55(1)           <---------TGA2(2)                                          <---------ANAC46        <------          ----------->TGA1                     --------->LBD16        <------MYB46(1)         <------        --------->YAB1           ------>MYB83 --------->ANAC46        <------MYB83           <-------        <---------ICU4         <---------MYB59--------->ANAC58       --------->MYB111(1)--------->ALFIN1       --------->ICU4          <---------MYB111(1)                   --------->MYB59    <---------REM1(1)       <---------YAB1          <---------MYB46(2)            ----------->RAV1(1)      <------MYB46(1)     --------->YAB1 <----------DOF2           --------->ANAC58    <---------GLK1(2)   <------MYB83 <-    <------ZmHOX2a(2)         --------->ANAC55(2)            ------>NtERF2--------->ALFIN1   <-------   --------->ARR11(3)         <---------ANAC55(2)           --------->ANAC46         <---------AtMYB61   <---------ARR11(3)    <---------YAB1      <---------LBD16<---------ETT(1)       <---------SPL7 <--  <------ZmHOX2a(1)<---------DAG2------>MYB46(1)            ----------->HVH21     --------->DEAR3(1)-   agaaggatcatgatgacgtcaccttttctgatacctaacttgtataacccggaagcgactctccgacagattaggtgtgtttcgccgtaggtgtagcttt  24174900                                                                              --------->MYB55(2)        --------->DEAR3(2)                                                    --------->MYB111(2)        --------->ATERF1(1)                                                   <---------MYB46(3)    --------->ABI4(2)                                                        --------->ALFIN1   --------->ALFIN1                                                        <------MYB46(1) --------->LBD16                                                           <------MYB83 ----DOF2                                                                 --------->MYB111(2) ---DAG2--------->MYB46(3)                                                <---------AtMYB61 --ANAC58   <---------ATHB12                                              --------->ALFIN1         <- --------LBD16           <---------ANAC58                                 <---------DEAR3(1)      --- --ANAC58 --------->MYB52(1)  --------->ETT(1)                    --------->REM1(2)              ---- -------LBD16            <---------ANAC58                        --------->ALFIN1                <--- -------->LBD16  <----------ID1       --------->At4g35610      --------->ALFIN1<-------GAMYB    <----   tcccggtggagccaacgatgagacaaggcttgtcggaaacagatgagagtttttcgaagcagtaagtgtggagagggaggtggttagggatgtcaatgtc  24175000         <---------LBD16       <---------WRKY18(1)      --------->WRKY12      ----------->HVH21                                                              --------->ARR14(2)      --------->WRKY38(1)                                                   <------MYB83  <---------TOE1(2)      --------->WRKY45                                                     <---------AtMYB61    <----------DOF2          <------ZmHOX2a(1)                            <---------MYB55(1)        -  <---------HSFC1(2)     <---------SPL7                                   <---------MYB52(1)   <-----  --------->HSFC1(2)    <---------ANAC46                                  <--------P <---------ARR14(2)  <---------HSFB2a(1)   <---------ANAC58                             ------->TEIL    ------->TEIL --- --------MYB52(1)       <---------ANAC58                    --------->MYB52(1)       --------->GLK1(2) ------>LBD16 ---------->TaMYB80<------ZmHOX2a(1)          ----------->HVH21<---------MYB46(3) <----- ----->HSFB2a(2)   <---------ANAC58                 --------->At4g35610 <---------MYB46(3)<---------TOE2(3) ------HSFB2a(2)   <---------ANAC58      <------ZmHOX2a(1)--------->ATERF1(1)   ----------->GT1<----- -----LBD16--------->LBD16<------NtERF2<---------TOE2(3) <---------ATERF1(1)<------MYB46(1)   <------   cggaagctttgaccggaaaatgcgaggcgtaggaggagaatgaggaagcacatcatcggagacgacggatgtatcggttggtttgtgaatctgaggttcg  24175100              <---------ICU4      <---------ZAT14   --------->At4g35610   <---------At4g35610 ---------->ARR10 ----ANAC58  <---------YAB1 ------>REM1(2)                                                                                     < ----ANAC46  --------->ICU4                                                                  <------- ----ANAC58--------->YAB1                                        *TSS                       --------- -TEIL--------->ZAT14<---------TOE2(3)                        ---------->DOF2             <---------YAB1   tgtagagctgcagtgatcattttgatgtaaatgaacaagtgttttttttttttttttttgagaagaaagaagaatgtgaatgtgtttgtttgattatact  24175200                                               <---------ANAC58                                               <---------ANAC58                                  --------->ARR11(3)                                               --                                  --------->AHL20(1)                                               --                          --------->AHL20(2)   <---------ANAC46                                    <-                        ----------->GT1       <-------TEIL       ---------->DOF2                   --                   ------->TEIL   <---------AHL20(1)           <---------YAB1              --------->AHL20(2) ----------DOF2 --------->ICU4    <---------AHL20(2)     --------->ALFIN1              --------->AHL20(2) ----GT1  --------->HSFB2a(2)  --------->AHL20(2)     <---------TOE2(3)      <---------ANAC46-------- >KAN4(2) <---------HSFB2a(2) <---------AHL20(2)      <---------AtMYB61      ----------->GT1---------   ctctttgagtttttagaaatgaatatatgtaaataatatatagaaatgtgcgtgtttaggtggtgatgaaagaagagttttgtataatataaaataaaaa  24175300                                                            <------MYB46(1)                                                            <------MYB83                                                           <---------MYB46(3)                                                           --------->MYB111(2)                                                           --------->MYB46(2)     --------->DAG2                                        --------->MYB59    ---------->DOF2                                        --------->MYB111(1) ------->ANAC58                                            <---------AtMYB61 ------->ANAC46         --------->ALFIN1                   --------->MYB55(2)          --------->MYB52(1) ---------ID1         --------->ALFIN1           --------->ARR11(3)                    <---------ARR14(2) ------->ANAC58 <---------AHL20(2)    <------ZmHOX2a(2)   <--------P                  <------ZmHOX2a(1) ->AHL20(2)     --------->AHL20(2)   --------->ARR11(3)   <---------MYB55(1)<-------GAMYB >YAB1     ----------->GT1          --------->GLK1(1)   <---------ANAC46   <---------MYB46(3)   tacgacaaaagtgaagaaataaatgtgtggggagagggagatcaaggagaagaaattggggtaggtagagggaatggctgttagaagaggaacggagggt  24175400            <------MYB83            <------MYB46(1)           <---------TOE2(2)           --------->MYB111(1)           --------->MYB59           <---------TOE1(2)          <--------P          <---------MYB55(1)        <------MYB46(1)                                                                           <--        <------MYB83                                                                              ---       <---------MYB46(3)                                           <---------AHL20(2)            ---       --------->MYB111(2)               <---------ANAC58           --------->AHL20(2)            <--       <---------AtMYB61                 <---------ANAC58          --------->AHL20(2)             ---       --------->MYB111(1)     <-----------GT1                  <---------AHL20(2)                <--       --------->MYB59     <----------DOF2            <---------AHL20(2)                  -----------       --------->MYB46(2) --------->TOE2(3)          <---------AHL20(2)   --------->TOE2(3)      ----  <---------AtMYB61    <-----------GT1   <---------AtLEC2       --------->AHL20(2)     --------->GLK1(2)   cgttttggtttggtaggtttcatattttcctttatactctcttgcatgtctattttttatttgtatttatttaatttcttaaaactgaaattctgttaaa  24175500                                                     <---------YAB1                                                    --------->AHL20(2)          --------->AHL20(2)                      <---------YAB1          <---------AHL20(2)                      <---------TOE2(3)    <---------ANAC55(1)                         <---------AHL20(2)    <---------ANAC58                           <---------AHL20(2)    <---------ANAC58                           --------->AHL20(2)    <---------ANAC55(2)     <<<<<<<<<SARD1  --------->AHL20(1)                                     --    <---------ANAC46        <<<<<<<<<CBP60g --------->AHL20(2)                                     -- -------AHL20(2)           ------>MYB46(1)  <---------AHL20(2)                                     <- ------>AHL20(2)           ------>MYB83     <---------AHL20(1)                                     <- ------>ARR11(3)       -------->P     --------->ANAC55(2)                                     ------- -------ARR11(3)   --------->ANAC58   --------->ANAC58                                        <------ ------>AHL20(1)   --------->ANAC46   --------->ANAC46                             <---------TOE2(2) -------AHL20(1)   --------->ANAC58   --------->ANAC58               --------->bZIP60(2) --------->ICU4 >GT1  <---------ARR14(2)<---------MYB59   --------->AHL20(2)        --------->ANAC46    <---------YAB1 ----->AHL20(2)--------->ARR11(3)<----------DOF2--------->AHL20(2) <---------ALFIN1<---------TOE1(2)   tatattgcgtatataaatatcaagctaccaaatttcttttacgaaataaattaatattatacaaaatcgacacatcactaagtcgcatgttatgatttta  24175600 ------->ARR11(3)                                                   <------ZmHOX2a(1) ------->AHL20(1)                                                 <---------TOE2(3) --------AHL20(2)           --------->YAB1                        <---------TOE1(3)            ------ --------AHL20(1)         <---------AHL20(2)                  --------->YAB1                   ------ -->AHL20(2)              --------->AHL20(2)            ----------->GT1 ----------->GT1  --------->ICU4 ---AHL20(2)        --------->AHL20(2)                  --------->ANAC55(2)            ---------->DOF2   atattttgttttatacgaacaaaaatataaaaataactactatatcaaatagttttataggtaatattaaggaatagctaaatgaaacacaaagattaag  24175700  Previous    Next  AGI:  At1g65060.1    Description:  4CL3 (4-coumarate:CoA ligase 3); 4-coumarate-CoA ligase. Identical to 4-coumarate--CoA ligase 3 (4CL3) [Arabidopsis Thaliana] (GB:Q9S777;GB:Q93Z69); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL1 (4-COUMARATE:COA LIGASE 1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G51680.1); similar to 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] (GB:AAC97389.1); similar to 4-coumarate:CoA ligase [Populus tremuloides] (GB:AAC24504.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (Clone 4CL16) (GB:P31687); contains InterPro domain AMP- Range:  from: 24170865    to: 24175165    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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