Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <XX                                 --------->ANAC58                                                 ---                                 --------->ANAC46                                                ---- --------ICU4         --------->YAB1                                                             ---- -------YAB1       <----------DOF2         --------->CCA1(2)                                     ---- ------>ICU4 --------->YAB1      --------->ANAC58       <---------TOE2(3)                       <---- --At4g35610 <---------ICU4   <---------REM1(2)---------->DOF2                                  -----   attattgtttctcatttatgactttcatcgtctacaagtaagaatatatgaaagtactaatgtaaccaagagaagactcatagatggacataagtgtaat  24165300                                        ------->GAMYB                                               -       <---------YAB1                  <---------MYB52(2)                                           < XXXXXXXXXXXXXXXXXMIR3434              --------->MYB46(3)                                           < -------------------->TaNAC69(2)     ----------->RAV1(1)                                           <- ----->YAB1 <---------MYB52(2)    --------->ANAC46                                --------------->AGL15 ---->HAHB4--------->ANAC46       --------->ANAC58        --------->DAG2          <---------------AGL15 ----->ATHB12                     --------->ANAC58       ---------->DOF2  ----------->HVH21        -- -----YAB1 --------->ANAC58   --------->ARR14(2) <---------ZAT14        ----------->GT1      -------- ---->ICU4 --------->ANAC58   <---------ARR14(2) --------->ZAT14      <-------GAMYB<---------ICU4----   gatagaattatgcaagtaactcttgctacaagtatccagcaacaaacactgtataccgataaggcgatagtgagttgtgacatactaatttcagcatgtt  24165400            <---------TOE1(3)       <------ZmHOX2a(1)    <---------LBD16                                      ----------->GT1 ------->HAHB4                                           <---------ANAC55(2)                      --- ---------ICU4                                          <-----------------------TaNAC69(2)   <------ZmHOX2a(1) --------ATHB1            ----------->GT1           --------->YAB1                     --------->YAB1 --------ATHB51       <---------AtMYB61            <---------YAB1                     <---------YAB1 ------->ICU4      <----------DOF2               --------->YAB1                      <---------ARR11(3) --->GT1    --------->MYB59                      <---------ICU4                      --------->ARR11(3) ----->YAB1 <---------TOE2(3)                   --------->ICU4                     ------->TEIL   ---   aataattcaggatttaggtttcttttggtggtataacatctaagtttggaataatgaaaacgtgaataaactaaaaacttacatgaatatcatcaggaag  24165500                                    --------->ANAC58                                    --------->ANAC58                               ------------------                              --------->ANAC58                                     <---------ANAC58                              <---------MYB52(2)                                   <---------ANAC58                              --------->ANAC58                                   ------>MYB46(1)       <-------TEIL      --------->ANAC58              <---------ARR14(2)        ------>MYB83      --------->CCA1(2)  --------->ANAC58              <---------ZAT14         <---------MYB59 ---------->DOF2         --------->ANAC46              --------->ARR14(2)   <---------WRKY18(1) ------>ANAC58       --------->ANAC58                  --------->ZAT14     --------->WRKY38(1)   ---- ------>ANAC58       --------->ANAC58           ---------->DOF2            --------->WRKY12<---------GLK1(1)   aagcaaagatacatggacaagtgaagcaagtcacgaacaagctccagatagaaagtgtatactggttttccttcccattgaccttccttgagcatatcag  24165600                                                                       --------->ANAC55(2)                                                                       ----------->GT1                                                                       <---------ANAC55(2)                                                                  <---------AHL20(2)                                                                 --------->AHL20(2)                                  <---------MYB46(3)        ----------->RAV1(1)                      --------->YAB1 <---------REM1(1) =================RAV                      <--------ATHB1 <-----------RAV1(1) --------->ANAC46                     <---------ATHB51==============================RAV<-------TEIL --->WRI1            <---------YAB1  <---------MYB46(3)----------->RAV1(2) ------->HVH21    <---------------AGL15          --------->YAB1--------->TOE2(3)    ---------->DOF2   tgacatagaaggcatacttcacaataatagaaacagttgttgttgccagaatcatatacctgcaacataaaattcgtaattaagtctaaagctaggctgt  24165700                                                                                             <-------                                                                                             --------                                                                                            <-------TEIL                                                                                  ---------->DOF2                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                             --------->GLK1(1)                                                                             <---------GLK1(1)                                  --------->MYB52(1)                         <---------CCA1(2)                         <-----------HVH21                            --------->ATHB12   <------ZmHOX2a(1)                      <------------CBF--------->At4g35610          <------------CBF     ----------->GT1 *TSS           --------->ZAT6  --------->MYB46(3)     <-----------HVH21    ---------->TaMYB80<------   atgatgcaaaattcagtaagactaaattgtcagaacaaacagctaaacagggggacatatcacatggtctattgatggcatatccaaagaaggatacata  24165800                                                  ------>ZmHOX2a(2)                                                 --------->GLK1(1)                                                <---------ARR11(3)                                              ------>ZmHOX2a(1)               <---------ARR14(2)                                          --------->ARR14(2)                  --------->ARR14(2)                                          --------->ARR11(3)                  <---------ARR11(3)                                          <---------ARR11(3)                 <---------CCA1(2)                                          <---------ARR14(2)              --------->LBD16 --ANAC55(2)        ---------->DOF2      --------->RVE1(1)  ----------->RAV1(2)                   <-- ->ANAC55(2)  --------->At5g28300        --------->CCA1(1)  <---------At4g35610              -------- ---MYB59  ------->TEIL              --------->AHL20(2)     --------->At4g35610      <---------At4g35610   actaaacaatatgcaccgtaaacaaagctaataacatgaataaatatcctgatctcttaatcacctgagcccttcccccatatattcagctattttcgac  24165900                                                                      ------>ZmHOX2a(1)                                                                      <---------HSFB2a(2)                                                                   <------ZmHOX2a(2)                                                                  --------->ARR14(2)                                                                  <---------ARR11(3)                                                          --------->AHL20(2)                                                          <---------AHL20(2)                                                    =======================HOX2a_HOX2a                                                    ======================HOX2a_HOX2a                                                    <------ZmHOX2a(1) --------->HSFB2a(2)                                       <----------DOF2<---------YAB1------>ZmHOX2a(2)             <----------DOF2   <------NtERF2       ----------->GT1<---------ARR14(2)          ------->TEIL     <---------ZAT2        <------ZmHOX2a(1)--------->ARR11(3)     <---------ANAC46      --------->ZAT2    --------->TOE1(2)   <------ZmHOX2a(1)                <-- -------At4g35610          <---------At4g35610   ==========================HOX2a_HOX2a<---------ARR11(3) ->ETT(2)<---------CCA1(2) --------->At4g35610   =========================HOX2a_HOX2a --------->GLK1(2)   agatgtttcatgtatcttttgtgtttgatagctggcataagctttaaactaggaggataattaaacaggatcctagaaactaaaacagtatctaagaggc  24166000                                                                --------->AtMYB61                                                            <<<<<<<GRF7          <-------TEIL                                    ----------->HVH21       ----------->GT1                                    ------>ZmHOX2a(1)                       ---      --------->MYB59                                   ----------->RAV1(2)                  --------      <---------TOE2(3)                          --------->MYB52(2)    --------->At4g35610   <------- --------DOF2              --------->YAB1      <---------MYB52(1) ---------->DOF2 --------->YAB1  <--   ctttaagtaaggttcatagaaaaacacattcacaatagtttcccatatagttagttcttcctgacaccaaaagagctcaaacaaacatcagagttattat  24166100                                                                                --------->GLK1(1)                                                            --------------->AGL15              <-----    --------->YAB1        <---------ANAC58                 <-----------------AGL2  >>>>>>>>>RAP2.2 ------>YAB1              <---------ANAC46                 ----------------->AGL3<---------ARR11(3) ->ICU4                   <---------ANAC58                 <-----------------AGL3--------->ARR11(3)<- --YAB1                 <-----------GT1               <---------STY1(2)       --------->YAB1 -------- ---------GT1     <---------CCA1(2)                   --------->STY1(2)    --------->YAB1  ----------   tcacaatagtaatagttcccatatttttacttgtatatagagatttaaaacatactagctatccaaatatagggctacaatgatatctaaaccgaaaggt  24166200  Previous    Next  AGI:  At1g65040.1    Description:  protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G16090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62198.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 24163497    to: 24165701    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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