Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------ARR11(3)                                                --------->ARR11(3)                                                --------->GLK1(2)                                               <---------GLK1(2)         <---------------AtSPL8        <----------DOF2                <-------TEIL         --------------->AtSPL8       <---------------AGL15        <---------At4g35610     <----------DOF2                  --------------->AGL15        --------->At4g35610   --------------->AGL15             ----------------->AGL3        --------->ZAT2   ====================================================MADS_MADS   <---------ZAT2   <---------------AGL15 <---------AHL20(2)  <---------TOE2(3)    --------->ARR14(2) ----->WOX13(1)      --------->ATHB12----------------->AGL1     --------->LBD16 ->HSFB2a(2)         <---------AHL20(2)<---------DAG2    <----------DOF2                       ------ --HSFB2a(2)        <---------YAB1 <---------ZAT18 <----------DOF2<---------ARR14(2)      --------->At5g28300   aattacacttttaagtacaatatttattgaattttagttccctttttaagaatctttttctttctccagagctgcattgggatttttgacactgtaaaca  23940300                                                                                                   <-                                                                                                  <--                                                     --------->ANAC46                             <--                                           <---------ARR14(2)                                     <--                                           --------->ARR14(2)                                    <---   <----------DOF2                         ------->TEIL                                          <---   <---------DAG2                         <---------CCA1(2)     <---------LBD16            <--------- --->YAB1                      <---------YAB1 <---------------AtSPL8          ---------->DOF2 <------   taatactttttgaaaattttagtaatggaaattgtgatcatcttgtatctggtacaggtcaaaaactctggagcatcgctaaaagttaagtttcttttgt  23940400                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                    <---------AHL20(2)    <----------DOF2                                                 --------->ARR11(3) ------GAMYB                                                 --------->YAB1 -------MYB46(3)                                             <---------ICU4 -------DEAR3(2)     --------->AHL20(2)                      --------->ATHB12<---------ANAC46 -------SPL7         <---------AHL20(2)          --------->YAB1 --------->AHL20(2) ------DREB2C(2) ----------->GT1                --------->ICU4--------->TOE2(3)  ---------->ID1 ------At1g77200 <---------YAB1               --------->YAB1<---------ATHB12 <---------ANAC58 -DOF2       <---------TOE1(3)       <---------YAB1         --------->ICU4   <---------ANAC58 <------ -----RAV1(1)<---------TOE2(3)     --------->ZAT6<---------ICU4 <---------AHL20(2)     --------->YAB1   cggtcgctataagttaatgttgataaatttgtttgtaatactatagtttaataatcaccgaaatcattaatttcttgtttcttgtccatttgtaatcttt  23940500                               <---------YAB1                             --------->ATHB51                             <---------ICU4                             -------->ATHB1                                                    <-----                             --------->ATHB12                                                 <------                            --------->AHL20(2)                                            --------->ANAC55(2)                            <---------AHL20(2)                                            <---------ANAC55(2)                         --------->AHL20(2)                                             <---------AHL20(2)                        <---------AHL20(2)                   <----------DOF2            <-----------GT1                     ----------->GT1--------->MYB111(1)      <---------DAG2             --------->AHL20(2)                     --------->MYB52(2)            ---------->DOF2                   <---------ICU4                 <---------MYB46(3) <---------MYB46(3) ----------->HVH21             --------->YAB1           --------->ANAC58 <---------ATHB51    --------->ANAC58                    <---------AHL20(2) --------->TOE2(3) <---------MYB52(1)           --------->ANAC46            ----------->GT1 <-------- ----DOF2  --------->ANAC58 --------->ICU4      --------->ANAC58     --------->LBD16--------->AHL20(2)   ttttcttaaatgcaagcatttgttagttaaattattagtagttgctaaacacacaaagtgacacttttctccagagaattgtgacattaattacttaatt  23940600                                      <---------ANAC58                                  ------->MYC2                                  <-------PIF5                                  ------->PIF5                                  ------->MYC4                                  <-------MYC3                                  <-------MYC4                                  ------->MYC3                                  <-------MYC2                                 <---------PIF3(3)                                 <<<<<<<<<<HY5                                 <---------TGA1a                                 ===================================bZIP_DOF                                 --------->bZIP60(2)                                 --------->O2                                 --------->PIF3(3)                                 >>>>>>>>>>HY5              ----------->GT1    <---------bZIP60(2)        <---------AHL20(2)       <---------O2                                                *TSS        --------->AHL20(2)   ----------------->PIF3(1)                --------->HSFB2a(2) --------->ICU4       <---------------AGL15--------->ANAC58                      <---------ANAC58        <---------YAB1       ===============================================================================MADS_MADS    <---------AHL20(2)      --------->ANAC46                   <-----------GT1       --------->MYB52(2)    --------->AHL20(2)    ---------->DOF2                <----------DOF2             ----------->GT1<    --------->ICU4        =================bZIP_DOF--------->ANAC46   <---------------AGL15--------->YAB1 ----WOX13(1)<---------------AtSPL8   <---------ANAC58 ------>ZmHOX2a(1)         ----------->GT1    - ------CBF   <---------TOE2(3)   --------->TGA1a   <---------ALFIN1  ----------------->AGL1<---------ICU4 -AHL20(2)   --------->MYB59--------->ANAC58     <---------ALFIN1 <---------ANAC58 <--------P<-------   gaagtattaattaataaggtataaacaaaaaagccacgtggcttctcttctccactcctctttttattccttcccaaacaagaaggttagttattattat  23940700                                                                                        --------->ABI4(2)                                                                          --------->GLK1(2)                                                                         --------->KAN4(2)                                                                         <---------ARR14(2)                                                                        <----------TaMYB80                                                                        <---------KAN4(1)                                                                        --------->KAN4(1)     -------                                                                        <---------HSFB2a(1)   <------              <----------DOF2                                           --------->HSFB2a(1)<---------At4g35610       <---------HSFC1(2)                                          <------MYB83        <---------DEAR3(1)       --------->HSFB2a(1)                                         <------MYB46(1)     <---------AtMYB61       <---------HSFB2a(1)                                       <--------P     --------->WRKY38(1)      <-----------ARR10                                         <-------GAMYB <---------At4g35610      ----------->ARR10                                        --------->MYB55(2)      --------->ALFIN1 --------->LBD16 <---------YAB1                                <---------MYB46(3)     <---------MYB52(1) ---------HSFB2a(2)                                            --------->ATHB12 ----------->HVH21 -------->HSFB2a(2)<---------GLK1(2)                   --------->ZAT2  ---------->TaMYB80 --------->ALFIN1 --YAB1--------->HSFC1(2)          <----------DOF2     <---------ZAT2  <---------KAN4(2)<---------MYB46(3)   ttccagagaagcttctcttttgattctctcgctctctctttcttcatcgcctcttcgagcttcgatggttgggaatattctggtgaccggtggtgctggt  23940800                       --------->At4g35610                       <---------At4g35610                --------->ARR14(2)                <---------ARR14(2)                                                              <----             --------->ANAC58                                                            --------->MYB46(3)             --------->ANAC58                                              ------>ZmHOX2a(1)   ------        ----------->HVH21      <---------HSFB2a(2)                         ==========================       <-----------HVH21<---------GLK1(2)                                  ========================== ---->GT1  <---------ALFIN1    <---------LBD16 --------->DEAR3(1)          ====================HOX2a_HOX2a ---MYB46(3) --------->ANAC46  --------->HSFB2a(2)             --------->TOE2(3)        <------ZmHOX2a(2)   tacatcggaagtcacacggttcttcagcttcttctcggaggctataacaccgtcgttatagacaacctcgacaattcctctctcgtttcgatccaacgcg  23940900                <------ZmHOX2a(2)               <---------ARR11(3)               --------->ARR11(3)              --------->GLK1(1)            <------NtERF2          --------->DEAR3(1)         <---------LBD16     ------>ZmHOX2a(2)    <------ZmHOX2a(2)    --------->GLK1(1)    <---------GLK1(1)   --------->ARR11(3)                    <-----------RAV1(2)   <---------ARR11(3)                --------->SPL7   <-----------ARR10               --------->ORA47(1)   --------->ARR14(2)             --------->DEAR3(1)                            <---------ICU4   <---------AGP1               <---------At5g28300                             --------->ATHB12   <---------ARR14(2)      <-----------ARR10                                   <---------YAB1 -------HVH21 <---------GLK1(1)<-----------GT1                                 <------ZmHOX2a(2) --->ANAC46--------->LBD16 <---------ARR11(3)                            <----------DOF2 ===========HOX2a_HOX2a    --------->ARR11(3)          <----------DOF2 <----------DOF2 ==========HOX2a_HOX2a    <---------GLK1(2)  --------->ALFIN1        <---------At4g35610   tcaaggatctcgccggagatcatggacaaaatctcaccgtccaccaggtttggctatcttttcccttgctctgctctttggatcattgcattctgagaat  23941000                  --------->DAG2            --------->TOE2(3)      <---------ICU4                              <---------ANAC58                     <----------DOF2      --------->YAB1                              <---------ANAC58                    <---------ANAC58     <---------ATHB12                  ------->TEIL                    <---------YAB1 <---------ANAC46     --------->ICU4                   <---------CCA1(2)     <----------DOF2           <---------ANAC58   ttcggtaatcatgacctcaaaaattgagagttttttttttgtatctcgatttgcttacaatgctttgggagttatgtttgatcaaattgcttttagtcgc  23941100                                  <---------MYB52(1)                                 --------->TOE1(3)           <------ZmHOX2a(2)     --------->TOE2(3)       --------->HSFB2a(2)      ----------->GT1                                                  ----       <---------HSFB2a(2)     <---------TOE2(3)                                             ------->PIF5      <---------LBD16          <---------YAB1                                 ------->TEIL<----------   --------->GLK1(1)       <---------GLK1(2)<---------ARR11(3)               <---------CCA1(2)-------   <---------GLK1(1)    --------->HSFB2a(2) --------->ARR11(3)            <---------TOE2(3)  <-------PIF5   agtggatttctggatcaaattgtgttcgagattatcgttaatctgagatttttgtttctgcaaatgttagatggctaatgtatcttatacctgcaggtgg  23941200  Previous    Next  AGI:  At1g64430.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO69536.1) Range:  from: 23937043    to: 23940529    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g64440.1    Description:  RHD1 (ROOT HAIR DEFECTIVE 1); UDP-glucose 4-epimerase. similar to UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2), UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] (TAIR:AT4G23920.1); similar to unknown [Populus trichocarpa] (GB:ABK95303.1); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089) Range:  from: 23940693    to: 23943562    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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