Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------YAB1                   --------->ANAC58                                                <---------AHL20(2)                --------->ANAC58                                                <---------AHL20(1)         --------------->AGL15                                              <---------YAB1               <---------------AGL15                                           <---------YAB1                 <-----------------AGL3                                           --------->ICU4                 ----------------->AGL3    --------->YAB1                         <---------AHL20(2)             ----------------->AGL2   <---------AHL20(2)                    <---------RVE1(1)              <-----------GT1 --------AHL20(2)                        <---------CCA1(1)         <---------CCA1(1)      <---------DAG2 ------->AHL20(2)                       --------->AHL20(1)         <---------RVE1(1)   --------->REM1(1) ----AHL20(2)                           <---------ARR11(3)        --------->ARR11(3)   <---------ALFIN1 -->AHL20(1)                            <---------AHL20(1)        <---------ARR11(3) ----------->RAV1(1) ---AHL20(1)                            --------->ARR11(3)<---------------AtSPL8 --------->DAG2 --AHL20(2)       <---------ATHB12  --------->YAB1        <---------------AtSPL3---------->DOF2    <-   tttatataatgacacttctaatcaattttgaagttgaatcaagatattattatttttgaaattgtacagatatttcaccatataaagcaacaccttatgt  23884800                                                                                            <--------                                                                       <-----------GT1     --------->At5g28300                                                                    <<<<<<<<<ARR1         -----------                                                                    <<<<<<<<<ARR2       <---------At5g28300                                                                   --------->GLK1(2)   --------->MYB52(1)                                                              --------->DEAR3(1)       <-----------GT1                                                              --------->DREB2C(2) <---------AHL20(2)                                                              <---------ETT(1)    --------->AHL20(2)                                                             --------->DEAR3(2)  --------->YAB1      <---------REM1(1)                                    --------->ARR14(2) <---------AHL20(2) <--- <---------ANAC58                                          <---------ARR14(2)--------->AHL20(2)  <--- <---------ANAC58      --------->ARR11(3)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ---- <---------ANAC46      <---------ARR11(3)             ---------->DOF2--------->YAB1 --------->YAB1  < --------ANAC46       <---------CCA1(2)        <-------GAMYB --------->MYB46(3) <---------YAB1   ----   tttgtgtgaggtagcatagaaaacatatcttatatggctacataatttgggttgaacaaaggaaccgacaatcttactatttattaaaataaccgttaat  23884900                                                                                         --------->AHL20(2)              <---------YAB1                                            --------->TOE2(3)<---------AHL20(1)        --------->DAG2                                                 <--------HAHB4    <--------ATHB1   <---------TOE2(3)                                                   --------->YAB1    --------->YAB1   <---------TOE1(3)                                            <---------RVE1(1)  --------->YAB1  <-----------GT1                                              --------->ARR11(3)  --------->TOE2(3) -MYB52(1)  ----------->GT1                                    <---------GLK1(2) --------->ARR11(3) >GT1  ---------->DOF2                                         <---------ARR11(3)<---------ARR11(3) ------AHL20(1)      <---------AHL20(2)                      <---------TOE2(3)--------->AHL20(2)   <- ------AHL20(2)      --------->AHL20(2)                      <---------YAB1   <---------AHL20(2)<---- ----->AHL20(2)  <---------YAB1                        --------->AHL20(2)<---------YAB1  <---------ICU4 ---------AHL20(2)--------->YAB1         ----------->GT1<---------AHL20(2) --------->YAB1<---------AHL20(2) ----->AHL20(1)--------->YAB1        ---------->DOF2   --------->ICU4 <---------YAB1    --------->ICU4   attttaacgaaaagttgtgataataaaacacaatagttcaaaagtgtaaaaacaatatttattaagatttttatcattaataaaatcttaataattttaa  23885000                                                                 --------->ANAC55(2)                                                                 <---------ANAC58             <---------AHL20(2)                             <---------ICU4         <---------YAB1                                    --------->AHL20(2)       --------->ATHB51                                 --------->AHL20(2)       <---------AHL20(2)                               --------->YAB1       --------->AHL20(2)                      <---------ARR11(3)<---------ANAC46       --------->YAB1                          <---------AHL20(1)<---------ANAC58  ------->GAMYB       <---------ICU4                          --------->AHL20(1)<---------ANAC55(1)       <--------HAHB4                          --------->ARR11(3)<---------ANAC55(2)  ------------>CBF       -------->ATHB1                ----------->GT1<---------AHL20(2)          <---------DOF5.7(2) <      <---------ATHB51             ---------->DOF2  --------->AHL20(2)          --------->MYB52(1)  <      --------->ICU4      <---------TOE2(3) --------->AHL20(2) <-----------GT1 ----------->HVH21    <   <---------YAB1  <---------TOE2(3)--------->DAG2 --------->AHL20(2)    --------->ARR14(2)      ---- ---------DOF2  <---------YAB1--------->AHL20(2)--------->AHL20(2)       <---------ARR14(2)  <------ZmHOX2a(1) -------GT1  <---------YAB1----------->GT1<---------TOE2(3)<---------AHL20(2)--------->At4g35610 <---   actttacaattattttttattaatgtataagattaaaaaaagttaagaaaatatttaataaaaaattacgttttgtatcggctaacggtccaataggaaa  23885100        ------------>CBF                                                   *TSS      ----------->GT1                                                     <---------AHL20(1) ---------HSFB2a(2)                                                       --------->AHL20(1) ---------TOE2(3)                                                         --------->ARR11(3) ---------YAB1                                            <-------TEIL    <---------ARR11(3) ----->ICU4                       <------------CBF----------->GT1    ------------>CBF ------ATHB51     --------->MYB46(3)  ----------------->AGL1  --------->MYB52(1)             <-------   ttatggaagagtcaatttcaacaaatgcgattagtcgattgcataaataggccagttaaatgcataacaggcccaatattttggcccaagtcttgataat  23885200                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                   --------->GLK1(2)                                                                ----------->ARR10        <---------HSFB2a(2)                                                            --------->ANAC58             ------>ZmHOX2a(1)                                                            --------->ANAC58   ------->MYC3                                                           <------NtERF2  ------>NtERF2  --------->LBD16                                                          ------>NtERF2  --------->PCF2----------->RAV1(2)       <----------ID1                                    <---------RAP2.3(2)   <-------MYC3        <-   <---------AHL20(2)              <------NtERF2         <---------RAP2.3(3)<---------ALFIN1    -----   --------->AHL20(2)            <---------DEAR3(1)      <---------DEAR3(1)<------NtERF2 --------->HSFB2a(2) --YAB1--------->ANAC46 <---------At4g35610       <---------ATHB12<---------GLK1(2)   ------>ZmHOX2a(1)   tcgaattaaacgaaaaaaatcgctgaagctcatcggaggcgaaaatggcgaaatcaatggcgacgctagattctggcaccacatgttcctcctggaatca  23885300                       ------>ZmHOX2a(2)                      --------->GLK1(1)                      <------ZmHOX2a(2)                      <---------GLK1(1)                     <---------ARR11(3)                     <---------ARR11(1)                 <------NtERF2                 <---------------------WRI1                 --------->RAP2.3(1)                 --------->ATERF1(1)                <---------ATERF1(1)               --------->ATERF1(2)               <---------ATERF1(2)               --------->ANAC46               --------->DEAR3(1)              --------->ERF1   ------->GAMYB             --------->At4g35610             <---------At4g35610         <---------MYB52(1) --------->MYB52(1)    ------>NtERF2<---------LBD16   --------->ETT(2)  <---------AGP1   ----------->HVH21<---------CCA1(2)   --------->DEAR3(1)--------->ARR14(2)                     --------------------->WRI1   <---------ETT(2)--------->LBD16                     ------>ZmHOX2a(1)  --------->ATERF1(1)<---------ARR14(2)            --------->ARR14(2) --------->LBD16------>NtERF2 --------->ANAC46     ------->TEIL                 <-------GAMYB     <-- <---------ATERF1(1)<---------ARR14(1)             <---------ARR14(2)           --------->At4g35610 --------LBD16--------->ATERF1(1)               --------->ANAC46           <----------DOF2        <-- ---->WOX13(1)--------->MYB46(3)              <-----------GT1   ---------->ID1  <---------At4g35610<-   atccggcgaccgtttagccgccggatctctcaacggaaaactttctatatacgaatcctctacttcgtcttcttcgactttcagttgcacttccaaagtt  23885400                                <---------ANAC58                                <-------GAMYB                               <------MYB83          --------->ANAC58                               <---------MYB46(3)    --------->ANAC58                              <---------AtMYB61    <---------ATERF1(1)                            <---------MYB52(1)     ------>NtERF2                          ------>ZmHOX2a(2)       ----------->HVH21                         <------ZmHOX2a(2)        <---------DEAR3(1)                        <---------ARR11(3)     <---------DEAR3(1)<---------ANAC46                        --------->ARR11(3)  --------->ZAT14      <---------ANAC58   ----------->GT1  ---------->DOF2         <---------ZAT14  --------->ATERF1(1)   --------->MYB52(2) --------->ICU4        <---------SPL7   <---------ANAC58 <--------P      --------->YAB1<------MYB46(1)--------->SPL7 <---------ANAC58 -------TOE1(3)  ----------->GT1<---------ANAC58  --------->DEAR3(1)                               <- -------TOE2(3)  <---------ANAC46   <---------ANAC58<------NtERF2<---------ANAC58 <---------At4g35610 --------ZAT6  <---------ARR14(2)   <---------ANAC58--------->ATERF1(1)           --------->At4g35610   agggttagtgaatcgagtatcgtaaagatcgtttggttgccttcagagtacggcgacgcagtagcctgcgtttgcgaagacgggagcttatcgatttggg  23885500                                          <---------MYB46(3)                                         <---------YAB1                                             <                                         <---------WOX13(1)                                <-------MYC3                                       <---------ICU4                                      ------->MYC3                                       --------->ATHB12                                    ------->MYC2 <---------GLK1(1)                    <---------YAB1                                       <-------MYC2 --------->At4g35610          --------->GLK1(1)                                          ------->TEIL --------->GLK1(1)            <---------GLK1(1)                                       --------->ANAC58 -----ZmHOX2a(1)    <----------DOF2   --------->ICU4                                  --------->ANAC58   aggagctctctgaaggtaacctctttgtgaagaaatctccatgattgttgttctgttttatcttatagagttgttttgtttttggtagacgcacatggtc  23885600                                                                               ---------->DOF2                                                                      ---------->DOF2                                                                    --------->LBD16                                                                   --------------->AGL15                                                                   --------->HSFC1(1)         -------                                                                   <---------HSFC1(1)        <-------                                                                   <---------HSFB2a(2)       <-------                                                                   --------->HSFB2a(2)       -------- ---------AtLEC2          --------->YAB1   --------->ZAT18        ----------------->AGL1    <--------   ttgaatggaaattgtgtaagagtatgaagaataagtctagccaagtgctcgatgttcaatttggagtttccagaaagagtctaaagatggtgagagattt  23885700  Previous    Next  AGI:  At1g64340.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41810.1); similar to Avr9/Cf-9 rapidly elicited protein 194 [Nicotiana tabacum] (GB:AAG43553.1) Range:  from: 23881788    to: 23884736    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g64350.1    Description:  SEH1H; nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G30050.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61200.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 23885175    to: 23886960    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version